| mature miRNA: TGCAGTTGTTGCCTCAAGCTT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|268777235|gb|CN608762.1|CN608762 SUL01-033F-B02-013.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): TGCTGCTAAGAAGGATGGGTCCTGTGACTGCAACTCTAGCTTTGAGTGTAATATCTGTCTTGACCCAGCTAAAGAGCCTGTGGTTACACCATGCGGTCACCTCTTCTGTTGGCCATGCTTGTACCAGTGGCTTCATGCACATTCACCCCACTCTGAGTGCCCTGTATGCAAGGGTGAGGTGCTAGAAGTGAATGTCACTCCGATATATGGAAGAGGCGGTGAAGAAGTGGATTCCACCAACCCTGACTTGCCACCCAGGCCACGAGCAAACAGAAGGGAGAGCCTGAGGCAACAGCTGCAAATGGCAGACACAAGAGGAAATGCATTGGTGAGGCAGTTGATACAAAACCATAGTATAGTTAGAGGCCTCCCAAGCCCAACAGGGATCGAAATGAATGTGGTTCCTGCAGGCCGGCAAAGGGCTAGGGCTCGGAGGCAGCAAAGGCAGGATAATA | |||||||||
gi|36062292|gb|CA296280.1|CA296280 SCUTSD1084D08.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCUTSD1084D08 5', mRNA seque TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CTGGAGAATTTGAAAAGAAATATGAACCAACCATTGGTGTGGAAGTCCACCCATTGGATTTCACCACGAACTGTGGTAAGATCAGGTTCTACTGCTGGGACACTGCTGGGCAAGAGAAGTTCGGTGGCCTCAGGGATGGATACTATATCCATGGTCAATGTGCAATCATCATGTTTGATGTAACCTCAAGGCTGACATACAAGAATGTTCCTACATGGCATAGGGACCTGTGCAGGGTGTGTGAAAACATCCCAATTGTCCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAGGTGAAAGCCAAGCAGGTCACCTTCCACAGGAAGAAGAATCTGCAGTACTATGAAATTTCTGCCAAGAGCAATTACAATTTTGAGAAACCTTTCCTTTACCTTGCGAGGAAGCTGGCTGGTGATCCGAACCTTTACTTTGTTGAAGCTGTTGCCCTGAAGCCTCCGGAAGTTACCATCGACATGGCTATGCAGCAACAGCATGAAGCTTAGCTTGGTGCAACGGCTGCACAAACCTTTCCTGATGACCATGATGAATTGATCGAGTAGAGAGGATCATGATCATGAATTTTGGACTTTGACAGGAATTGGGCCTTGCGGTTTAAGTTGGTCTAGGGGGGAACCCTTTTTTGAT | |||||||||
gi|36055778|gb|CA294080.1|CA294080 SCSGLV1009F04.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1009F04 5', mRNA seque TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GANACGCGTGGGATGGGTGGCCTTCTCCATGTCACCCATATTATTCATGACCGTGTCGAAGATATCTCAACGGGGCTGCAAGCAGGAGATACCCTCAAGGTTATGATACTGAGCCATGACCGTGAAAGAGGCCGACTCAGCCTTTCTACAACGAAGCTTGAGCCAACACCTGCTGACATGATCCGTAATCCCAATCTTGTCTTTGAGAAGGCTGATGAGATGGCTCAGATATTCAGGCAGCGAATAGCTCAAGCAGAGGCAATGGCTCGTGCTGACATGTAGAGATTCCAGCCCGAGAGTGGATTGACCCTCACTTCAGAGGGCATCTTACGACCATAGTCGTCGGACGTACCTCCAGAGGATTCCGAACCCACAGATGAATAGAGGCAGGTGACGAACTGCACCGGATTTGACATATGTGATGGCAGTTCATCATACTTGTTTTTCTTCGACGGAACGGCCTGACCCAAGCATGTCCTGTTCAGATCGGTCTCCCCCTTTCAGTTATTCTCGTCTTCGGGTGTTGGCCATTTGAAAAGGTACGAAAGGTCTGAAGAACGCGAAAAGAACTGTATTCAGCGTACCTTGTGGAAAGCTCTTCGCATCTTGGCGGGACTCCCCAATTAAAAACAAAACTCCAGGGGCGCCCGCCC | |||||||||
gi|268792191|gb|DV639323.1|DV639323 SUR01-169-E10-A-082.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): CCAGGTGTCCAGGTCTTCGTCGGGCCCTTCTCCGGCACCGAGCACCCACCAGGAATAACCATGGAGGTCAGACCGATGGTAGCTCTGCGTGCTGCCCTAGTCGGTGGGATAGCAGCGTTTGCGAAGATCGGTGGGGCCATGAAAGCTGCAGGAGGTGTCAAGATTGGTGCAGCAGCTGCAGCCATGACAGCTGCGGCATCTGCTGCCATATCTGGAAAAGATGCAAAAGAAGACACTTCAAAGGCAGAAACAAAATGATATGACCCATGGATTGTTCGAGCAGTATTAAATTGCCTCTCCAGAGGTTCAGAAGAGAAATGATGCCATAGTCAATAAGTTACTGGAGCAATTTTTCATGCTCCACGTGTTTTTGTCTTGGGAATAAGAATGACAATCGAGTTCCCCAAAGTATGATTTTGTGCCAACAGTTT | |||||||||
gi|36067385|gb|CA297918.1|CA297918 SCCCSD1C02D04.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCCCSD1C02D04 5', mRNA seque TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCTCTGCAGTGATATATATTATTCTTACATTGTCATTTGTCAGTATTATGATGATCCTCAAGTTTTAATAAAAAATTAAAATACACTATAAGTACGTTTATACCTTGCATAAGTTGATTTTACTAACGTTCAATTATTTTAATTAGATATGCATTTGGGGGCAGCAAGCTCGAGACAGCAACTGCATAACTTGCAAGAGCTTGTAAGTGTTCTTTTGTATTATGAGAAATATCATTTATCTTTTGTTATTCCCACAGCGATTGATAGATTGATACAGATTGGATCAATGTTTTTGGTTGGCCTAACTGGTTATTATATGTACTATGATGTGATAATTATACTAGGCTTGATTTTTTCGTAGAATACTACAAAGTACAATGAATGTGGTTAAAGGGTATAGTTGCAATGCCTGCTTACTTGGGTTCCACCCTAAGCAGGTCTCGTGCTTAGAGTACAAAGCATTTTATGTAAGACATAATCTGCTGCTGATCTCTCTCTCTTTGTTNGTGCACAGCAGATTTGGCAATAGGTCATTCTCGGCTGTTCTAGTTGTGTAGCAGAAGGGCAATAGGCCACCACTGGTACATTAGTTGGTAGCTAATACGCAAGCCATGTCTTGTGAGTGGCCTGAAGTAGAAATTTGACTGTTAGACTTAAGAGGATGATGGGCGTGTACTCACCCCGCGCAATGTGGCCCTTAATGGGGGCCAGAGGGGTGTTACTCTTTTACCTTGGGAGGAGAAAGGGGTTTTGTTCCCAACAACAAAAAATATCTTTGCACCGCTGGGTTGTGGGGGGGGCGCGGGACAACCCTTTT | |||||||||
gi|36032157|gb|CA286431.1|CA286431 SCBGSD2049D05.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD2049D05 5', mRNA seque TGCAGTTGTTGCCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCGAGCCCCCCGAGTCCCCGACTGTCTCCCGGCTTGCTCTCTGTCGGCGACGACTGGGCTACCGCCGCCGCCGCCCTACGCCAGGTGTCCAGGTCTTCGTCGGGCCCTTCTCCGGCACCGAGCACCCACCAGGAATAACCATGGAGGTCAGACCGATGGTAGCTCTGCGTGCTGCCCTAGTCGGTGGGATAGCAGCGTTTGCGAAGATCGGTGGGGCCATGAAAGCTGCAAGAAGGGTCAAGATTGGTGCAGCAGCTGCAGCCATGACAGCTGCGGCATCTGGTGGCATATCTGGAAAAGATGCAAAAGAAGACACTTCAAAGGCAGAAACAAAATGATATGACCCATGGATTGGTCGAGCAGTATTAAATTGCCTCTTCAGAAGGTAGAAGAGAAATGATGCCATAGTCAATAAGTTACTGGAGCAATTTTTCATGCTCCATGTGTTTTTGTCTTGGGAATAAGAATGACAATCGAGTTTTCCCCAAAGTATGATTTTGTGCCAACAGATTCTGGTGTTGAATGTTAGTCACACTGTATGAGTAGCCTGATTATTACTGTGCCACATATTGTGGGCGCAAAGATACTCCTGTCATATTATGTTTGACACGAAGATACTTTATGGGTCTCGTGCAACTTCATGCGTAAAAATATGGTGATTACATCAAC | |||||||||