| mature miRNA: TGCAGTTGTTGTCTCAAGCTT species: Avena barbata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|240324539|gb|GR334298.1|GR334298 CCOU1634.b1 CCOU Avena barbata leaf, pooled from different levels of rain and nitrogen (H) A TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCTGAAGTGGCTATACACGGATGTCATGCAGAAGCTGGAAGCTAAGGATTACTCAACACTACCAGAGGCTCATGCATGTACTGCTGGGCTGAAGTCTGTGACAACATCTGCAACAGCTGACGCGATTGAGGAATGCCGAAAGCTCTGTGGTGGGCATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCGGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTCGTTTTGCTTTTGCAGGTTGCAAGATTTTTAATGAAGACTGTTTCTCAGTTGGCCTCTGGGAAGCAGCCTGTTGGTACAACAGCTTATATGGGCAACATACAGTACTTGATGCAGTGCAAAAGTGCTGTAAATACAGCTGGAGATTGGCTTAATCCTGCTGCCATAAAGGAGGTGTTCGAAGCTAGGGCTCTGAGGATGGCGGTAAACTGCGCCCAGAACATTAGCAAGGCCCCAAGCCAAGAAGAAGGTTTCTCTGAGCTCTCACCTGATTTACTTGAGTCTGCTGTGGCTCACGTCCAGTTGATCATCGTTACCAAGTTCTTTGAGAAGCTGCAACAGGATATCATCGGCCACGGGGTAAAGGAGCAGCTCCAGAACCTTTGCAACATCTACGCACTCTTTCTCCTCCACAAGCACCTGGGCGACTTCCTGTCGACGGGTGCATCACGCCCAAGCAGGGAGCCCTGGCAAACGAGCAGCTTGGAAGCTGTACGCGCAGTGCGGCCAAACGCTGTGGCGCTAGTTGACGCATTCGACTACACGGACCACTACTGAGTTCGTCTGGGGCGTA | |||||||||
gi|240307999|gb|GR328097.1|GR328097 CCOS889.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone C TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CGAACAGAAGCGAGGGCATGAGGCAGCAGCTGCAGATGCCAGACCCGAGAGGCATTGAGAGCATGGTCAGGCGGTTGATAGAAAACCAGGATCACTTGAGCGGCCAGGCAGCTCAGCCTGCAGGCGGAGTTGAGGTGACAGTGTTTCCTTAAGGCTTGAGAAGGCTCAGCAGGATTCATAGACAGCAAAGAACTCCTAGTCTTGTTCCACCCTCCCCAATAGTGCGGCCTGTGCCGCGCTATGCAGCCCGTGAGAGTGGCAGTCCGGCTCAACTGCCATTTTCTAATTCTGATAATGCTGCACCGTCAGTTCCTCAGCAGTCATCATTTATGGAGCAGGCATCGACTTCTAGCACCGTGGCTGTTATAGTGGGGCAGGCAGCCCAGAGTAGGAGGTCCAGGCCCCCTTCGGAGCCCACAGCCACAAGAAGAACGAGGAGGAGGCAGCAGCACTAGGTAAAAGTGGCGCTGCCATGTCCTCCAATAAAACTTATAGATCGTGCTTTACTGTTGTTACCATGGTTAGCTTCAAAAACATGTCAACGTTTTTATAAGTTATAGGGATGTGTATATGCTATCGCTTTGCACCTATATGTACATTCGTGGAAACTTTCAGTTTCAGTATCTTTATTGACATGTATGCGGGGCTAAATTTCCCT | |||||||||
gi|240302792|gb|GR319994.1|GR319994 CCOP2161.g1 CCOP Avena barbata leaf, grown under ambient rainfall (L) Avena barbata cDNA clo TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): TGAAGGCAAAACAACTGTCAATGATTCAATAAGGATAACAGAAGGAATATTGAATCCTTGAGGGAGAATCAGAAAAAACTGAAAAGCACAATTGGTGTGGAAAGAGAGAAGATTGGGGCAACAGCTGTACTTTTGCAAGCACTTGAAGTTCTCGGACTTCTTGAAGCTGTAAGAAAGAGAAAACAAGAGCCAGGGTCTGATTATGAACAAGCTGAACAAGCTCTGCGCAAGTGTATTTCACTTTACAACGAGCCTCGTACACGAAGTGTGGTGTCTAAATACCTCAGGCAGCAATATGCGAGATGCTTGAGCAGCCTCATGCTTATTATTCAGCATGATCCAGACATCTCGAACACGCCTCGGATGCAGGATCTGCTAGGTGAAGCACAGCAAATAATGAAGGAATTGGGCGAAGAGAAAAATATGAAGTGATTTTTTGTATGGACGATATGGTGGTGACCAGAGGAATAAAACATGGCGTACAGAATCATATGGATTCACGGCTTATAGAAGAAACCAAAAGTCCAGTTTTTGCCAATTGTACAAAACGTTGATACATACATGATCAGTTCTATTGGTTTTGTTTATATCTTTTGACCGTTTCTGCTCAGTAGTTGTAAAATGTTAATCAAGTCTTTTTCTCCTATCTTACATCAATTTCTCCCAGCATTGTTTTCTCGGCTGGATTGCTCCTCCGATATAATACTATTATAAAATCTATGGGATAATGGCATGCATAACGATCCTTGTGC | |||||||||
gi|240301719|gb|GR322382.1|GR322382 CCOP521.b1 CCOP Avena barbata leaf, grown under ambient rainfall (L) Avena barbata cDNA clon TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CAAGAGCAGCAGCAAGGTTGTCGGCAACCCGTGGCACATCCGCTCTGCAAATCGAAGAATTGCATTCCACCTCCGCCTCTTTCTCCAGCAAACTCCTCGCTGTCGCGAGCCGCGGTCGACATCTGTCTCGCCGATTCGCTTCCATCGGCCATCTGTTGCATCGCCTCGCATAGCTCCACGCGGCGCCCATACGCCCCATCGATCTCGTGTTGGTTTCGCCGCCCCGATTTGCTTCCTTAATCCCAACCCCAAGCTCTAGCGAGTCGCGGTGGCTGGCATCGGTGTCCACATCCCTCCAGCGGTGGCCGCGCGGCGCGCGCCGTGCTCTCAGATTGGTGCAAGGGGTGGTGACCAGCTTGGGGCAGCAACTGCATATCTTGTGAGAAAATTGGGTTTCAGAACATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAAGTGCAATAGCAGAATTATGCAATGTAAAGCCATGAAAGTAACAATTTTCTCAACACTGACATGACGGCTCTTTAGCATGAGAAATATTATGATGCATGATGTTTACATAGTATCTTGATCATTAGAGAGAAATGTCATTTTTTTTGTTACCAATCTGGCCTTTGTGTCCTTTTTGCAATATGGACGCTACCTAGCTAGGTTTTAAATTATGTACTCAGGAAAATGTATTTAGGTTGGTTAGCTGGTATGCACATTTGGGTAGTGCCGCAATTACTGGCATATCAGCTCAAGAACATAACAAGTCATAAACAGGGTGAGTATA | |||||||||
gi|240309386|gb|GR324184.1|GR324184 CCOS1616.g1 CCOS Avena barbata leaf, grown under high rainfall (H) Avena barbata cDNA clone TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): AAACGTCACACCGATTTATGGAAGAGGAGGTGATGAACGGGATGCTGCCAGCAATGATATCCCTCCCAGACCGCGTGCAAACAGGAGTGAGAGCTTGAGGCAGCAGCTGCAGATGTCAGATCCGAGAGGCATTGCAAGCATGGTGAGGCGGTTGATGGAAAACCAGGATATAATGAGAGGTCAGGCAGCTCCACCTGTAGGCGGTGTTGAGGTGACTGTGTTTCCTGCAGCCCGGCCAAGGGCTAGGGTTGGGATACAGCAAAGACGTAATCTTGCTTCACCCTCGGGCGACACTGCCCCTGAGAGCAGCAATCAGGTCCAATTTCTGTCTTCTAATTCCGATGACGCTGCACTGACAGATCCTCAGCAGTTGTCATCTTTGGAGCGGGCGTCGACTTCTAGCACCGTGGCTGTTAGAGTGGGGCAGGTAGCCCAAAGTAGGAGGTCCAGGCCTTCGGAGTCCACAACTACAAGAAGAACAAGGAGGAGGCAGCAGGAGTAGATAAAAGTGGGGCTTCGATTTGCTCCAATAAAACCTATAGATCATGTCCCATTGTTACCATGATTAGCTCCAAAAACATGTCAACTTTATATGGTACCTTCTTATTTCCTCCAATAAAATCTGTAGATGATGCCCCATTGTTACCATGGTTAGCTCCAAAAACATTTTCAACATTATAAGGTTGGAATGTATATGCTAGCTGTTGCTTCCTCATAAATCATGTATGTACCTTCTTATTTGCTCCAATAAAATATATAGATCATGCCCC | |||||||||
gi|240337437|gb|GR339369.1|GR339369 CCOW1591.b1 CCOW Avena barbata leaf, pooled from different levels of rain and nitrogen (L) A TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATCTCTCGCCCCGCCGTGCGCCGGTTGGTGCTTGCGAAGCTTGCCTCGTTCCCCATTTGCCCATACCACGACTCACCGCCGCTCCTATCCCATCCGATTGCTCTGACCTTGATTGCGGTGTCTACCCCGACTAGGGTTTCAGCGTCGGCGTGCCAGTTGCTGCAAGTGGAGGCGGCAAGCTCGAGGCAACAACTGCACAATTTGCAAGAATATCCCACTGCAGGCACGATGGCATTACTCCATCTGCATGGAAGCCCATGAATCCAGCCCCATTGTGCGAATTCTGGCCCGTCAATAGAGGAACACGGGTGTGTGACTAGAGACGTAGAAGTGCAAACTCTGGCCCGTCAATGGAGGAGCACGGGTTTTCGGGCCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTACATAATTTGAAACTACAGTCAAGTAGTGCCACATCCAGGTTTGCCAAAAGTATTTAAATAGACATGACAAGCATGGTTAATCACATGGTATTACATACATCTTCTTTCATTGAGAAATTTATACAATAAATTCCAAGCAAGGACAAAGTAACTCGAAGAAGAAAACAAGGCAGTTTAGGAAACCTTTCTTTTTCTTAATTTGAATACTTGAGTCCAGTAATTCTGTGCGAAGGTTGTCTAAGATTGTGGAGCCATCACCTATCAGACAGAATATATTTCCTTTGCCTTCCATGATGTCACCCCTAATTCTCACA | |||||||||
gi|240318576|gb|GR333097.1|GR333097 CCOT929.b1 CCOT Avena barbata leaf, grown under high rainfall (L) Avena barbata cDNA clone C TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): AAATTGATTTCTAGTTACACTCCAGAATTTGGAATTAAATTTACTGTAGGAAAAAAGTGAACATGGCAACTAAATCTAAGACAACAACTGCAAAGGAAGGGAGTGGCACACCTTATCAGCTCAACCTGAAGCAGGTATCCAAAGCTACAGAGTCCCTTCTCGCTCACATAATAGCAACGCAAAAATCGAATTTAAAAGAAGATAAATTAGTATTGCTTGACGAAGATCCCCTCGAAGATTATCCAATCTGGTTCCAACTCACAACCAAATTACACATAACTGCGAACAAGCGGCTCAAACCCATTAAAATATCCTTGCCTCACCCTCTTCACACGCACTCTAATTCTTCCATTTGTTTGATAACCGCAGACCCACAGCGAGCAGTAAAAGATCTTATTTCACATCCTTCGTTTCCAACTGCTCTTTCAGCTCGTATCACCAAAGTTGTTGGACTTCACAAACTAAAAGCGAAGTGGTCACAATACGAAGCGCAAAGAAAACTTTATGCAGAACATGATATCTTTCTTGCCGACGATCGCGTGGTAACAGCACTTCCCGCAATTCTAGGCAAAACTTTCTACAAAAGTACAGCAAAGCGTCCTATACCAATAGCTATACAACAACAAGCTCCTAAGGTTGGCGGTGTACGAGTAAAAAAAGTCAAAGGGTGATCCGCCGCGAGAACTTGCCAACGTTGCTGCCGTGGTAAAGGAAATAGAGAAGGCGTTAGGAAGTGCCGCTGTCTACCTAAGTCCTAGTACGATTACTGCTGTAAGAATAGGCTTCGCAACTG | |||||||||