| mature miRNA: TGCAGTTGTTGTCTCAAGCTT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78017291|gb|DV485678.1|DV485678 5514_A02_A09_A18ZR_079 Brachypodium distachyon root EST library Brachypodium distachyon cDNA TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTGTACTGCTGGGCTGAAGTCTGTGACAACATCTGCAACAGCTGATGCAATTGAAGAATGCCGAAAGCTCTGTGGTGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCAGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTCGTTTTGCTTTTGCAGGTTGCAAGGTTTCTAATGAAGACTGTTTCTCAACTGGCTTCTGGGAAGCAACCTGTTGGGACAACAGCTTACATGGGCAACATACAATATTTGATGCAATCCAAATGTGCTGTAAATACAGCTGAAGAATGGCTTAATCCTGCTGTCATAAAAGAGGTATTTGAAGCTAGGGCTCTGAGGATGGCGGTAAATTGTGCCCAGAACATAAGCAAGGCACCAAGCCAAGAAGAAGGTTTCTCTGAGCTGTCCCCTGATTTGCTCGAGGCTTCCGTGGCTCACGTGCAGTTGATTATTGTGACCAAGTTCATCGAGAAACTGCAGCAGGACATCCCAGGGCATGGCGTGAAGGACCAGCTCCAGAACCTCTGCAACATCTATGCTCTCCACCTTCTCCACAAGCACCTGGGTGACTTCCTCTCGACGGGCTGCGTCACGGCCAAGCAGGGCGCGCTGGCGAACGAGCAGCTTGGAAAGCTCTACGCCGCGGTGCGCCCCAACGCGGTGGCGCTGGTGGACGCGTTCGACTACACAGACCACTACCTGGGGTCTGTCCTGGGGCGGTACGACGGCGACGTGTACCCGGCGCTGTACCAGGAGGCGTG | |||||||||
gi|78019934|gb|DV488321.1|DV488321 5537_D08_G15RZ_058 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAAAATACGTCCACTCCAATGTTCCAAAGCAGCTGCTTTATGGGACAATGGTTTACGTTCGTCAAACAATTGTTGCGGATGCTTCCAAGGCTTTGTCCCGTGCTGTTTGCATTGCTGTAAGGTATAGCGCTATCCGAAAGCAGTTTGGTGCTCAAGCTGGTGGCCCTGAGACTCAGGTCATCAATTACAAGACTCAACAGAGCAGGCTCTTTCCTTTGCTGGCTTCAGCTTATGCATTTAGATTTGTGGGTGAGTGGCTGAAGTGGTTATACACTGATGTCACACAAAAGCTTGAAGCTAAGGATTTCTCAACACTGCCCGAGGCTCATGCCTGTACTGCTGGGCTGAAGTCTGTGACAACATCTGCAACAGCTGATGCAATTGAAGAATGCCGAAAGCTCTGTGGTGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCAGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTCGTTTTGCTTTTGCAGGTTGCAAGGTTTCTAATGAAGACTGTTTCTCAACTGGCTTCTGGGAAGCAACCTGTTGGGACAACAGCTTACATGGGCAACATACAATATTTGATGCAATCCAAATGTGCTGTAAATACAGCTGAAGAATGGCTTAATCCTGCTGTCATAAAAGAGGTATTTGAAGCTAGGGCTCTG | |||||||||
gi|270422729|gb|GT805914.1|GT805914 CCXG13582.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATCAAATGTTGATGAGGCTGTCGCAAGTCACAAGAGAGGGAAAATACGTCCACTCCAATGTTCCAAAGCAGCTGCTTTATGGGACAATGGTTTACGTTCGTCAAACAATTGTTGCGGATGCTTCCAAGGCTTTGTCCCGTGCTGTTTGCATTGCTGTAAGGTATAGCGCTATCCGAAAGCAGTTTGGTGCTCAAGCTGGTGGCCCTGAGACTCAGGTCATCAATTACAAGACTCAACAGAGCAGGCTCTTTCCTTTGCTGGCTTCAGCTTATGCATTTAGATTTGTGGGTGAGTGGCTGAAGTGGTTATACACTGATGTCACACAAAAGCTTGAAGCTAAGGATTTCTCAACACTGCCCGAGGCTCATGCCTGCACTGCTGGGCTGAAGTCTGTGACAACATCTGCAACAGCTGATGCAATTGAAGAATGCCGAAAGCTCTGTGGTGGACATGGTTACCTGAACAGCAGTGGGCTTCCTGAATTGTTTGCAGTCTATGTTCCTGCTTGCACTTATGAAGGAGACAATGTCGTTTTGCTTTTGCAGGTTGCAAGGTTTCTAATGAAGACTGTTTCTCAACTGGCTTCTGGGAAGCAACCTGTTGGGACAACAGCTTACATGGGCAACATACAATATTTGACGCAATCCAAATGTGCTGTAAATACAGCTGAAGAATGGCTTAATCCTGCTGTCATAAAAGAGGTATTTGAAGCTAGGGCTCTGAGGATGGCGGTAAATTGTGCCCAGAACATAAGCAAGGCACC | |||||||||
gi|270455964|gb|GT838490.1|GT838490 CCYP1272.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATCAGACATCCAGCGCAATCGAAGATTTGAATTCCAGCTATGGTTCTGCGACCATCTCTTGCAACCTCCTCGCTGTCACGAGGCATGGTGATGGTGTGATCGACATGTGTCCCGCCGATTTGCTTCCATGACCATCTGCTGCGTCGCCTCGCATGGCTCCACGCGTCGACCACCCGTGCTCCCACAGACCCCCGTCGATCTCGTGTTGGTTTCGCCTTCCCGATTTCCTTCCTCCCTAAAGCCCCGATCCCCCCAAGTTATCGCAAGCCGCAGTGGCTGGCTTCGGAGTCCACATCTCTCCACCGGCGGCCGCGCGCCGTGGCCTCAGATTGATGCAAGGGGTGGTGACAAACTTGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGGTTTCAGAGCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTGTCAGTGCAACAGCAGAATTATGCAATCTGAAGGCAAAAAGTAATGAAAATGTACCACTAGCAAACATGATTAGTTATTGGCATAGAGAATATTCCGATGCATGACATTTGCACAGTAGCTGCACAACTAAGCGAGAAATAACATTTCTGGAAAACGCAGGCAAGCATGTCCATTTTGAAATATGGATATCCTGTCTTGTTAAAGTCTTTAATTACCAATATGTACTTATTTAAAGTGCTCAGCTAGTAAA | |||||||||
gi|270470525|gb|GT852250.1|GT852250 CCYP8887.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GAAATCTGCTGGCCTCGAGATTGACGATATTGATCTCTTTGAATTGAACGAGGCCTTTGCCTCTCAATTTGTCTATTGCTGCAAGACGTTGGGACTAGACCGGTCAAAAGTAAACGTGAACGGAGGCGCGATTGCTATGGGACATCCTCTTGGTGCAACAGGTGCCCGGTGCATCGCTACTCTTCTGAATGAAATGAAGCGCAGGGGTAGAGACTGCAGATTCGGTGTCGTGACCATGTGCATCGGATCTGGTATGGGCGCAGCGGCTGTCTTCGAGCGGGGAGACTCGGTGGATGAACTCTCCAATGTGCGCCACGTCCCGTCGCAAAATTTCCTATCCAGGGATGCGAAGTAGAGGCTCAGAACCCTAGAGTATAGATCCTCAGGCAGTATGAGAGCCACGCGTGTGACAATAACTGCATGAAAAAAGAAGATTGTAACTTGATGAGATAAAAAAATGATGTCGAATACAAAAGTTTATGTACCGTCACACTTTACGAATAAAATAGACTATTTGTTAAGT | |||||||||
gi|270412192|gb|GT795241.1|GT795241 CCXG7367.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG73 TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): TCGATATGGAAAGACCAAGACGAGCAGCAGTCGTCGCAAATCCCAACTCGGAGCTTAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGAGAAGATCTATCAGGGCTGAACGTTAAGGAACTGCAGTCCATAGAGAATCAGCTGGAAATAAGCATACGTGGCGTCCGCACAAAGAAGGACCAGCTCTTGTTCGATGAAATTCACGAACTGAATCGGAAGGGAAGTATGGTTCACCAAGAAAACATGGAATTATACAAAAAGATAAGTCTGATTGGCCAAGAAAATGCTGAATTATATAAGAAGATCTACGAGGCAGAAGGACCAAGTGAAGTCAACCAGGATTCACCAACACCATACAACTTTGCAGTGGTTGAGAACAGGAATGTTCCTGTGCAACTTGAACTCAGCACACTGCCACAACAGAATGATAATGAGCAGTCAACTGCTCCTAAGCTAGGATTACAGTTAAATCCATGAACTGAAGTGATAACGTTGAGGTCTGTTGCTGAAGGATACTATTTGATGTAAAGAGTTGATATTCAGAGCAAGAGTTTACACAACGAGTTATTTAAGGAATGGACATGTAAATGTACTGCAAATAAGTGCCACCATGGAATTGAATTGTGGAATCCAGAAAATGATTGTTTCCTAAAGCATAATTATTTATTTGTACAAATCCACCTGGCATGGAAAAATAGATGAGATGTGTGTACTCCAC | |||||||||