| mature miRNA: TGCAGTTGTTGTCTCAAGCTT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45955974|gb|CN128779.1|CN128779 RHOH1_31_C02.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_31_C02 TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GAGCCGGGAAGATTTGGAATCCAGCTCAGATTTCGCTCCTCTCTCTCCCTCCCTGCCCTCCCTCCGCCCTGGCGAGCCCCCCGCGGGCGACGTGTGTCCCGTCTGCCTTTCCTTCGCTTCGACGGCCACCTGTTGGCCTCGCATGGCTCTGCTGCCTAGTGCCTCCCTGCCAAGCGTCTCGAAGCTCCCGCTCGCCCGCGGCGGCCCAGCGCCGCGGCGTCGTCAATCCAGCCAGATCCGCGCGATCCCCGCTAATCGCCGCCTCAACTTCTCTACTTCTCTAGCTCATCCGCGTCCCGGCTCGATCGGCACTGCCTCCTCCTCGCACTTCCCTTCTCTTGTATATTGTATCTAGCCCGGCCCCCCATCGTCACAATTCATCGGCAGCGGCGCGCCCGTCGTCTCAGATTAATGCAAGGGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGAACCATACCGATCATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAAGAAAAGCACAGGTTATATTATCAGTGAACACATTGGCACAAATTTTAACTGATATGTGTTGGTAACAGACATGACGTTTAATTGGAAATCTTGCAGCATGATGCACATACAGCAGCTCTGACGTACTCCCTCCATTCCAAATTATAAGACGCATTGGATTTTCTAGACACATTGATTTTACTATATATCTAGACATAGTGTATATCTAAGTGC | |||||||||
gi|18064704|gb|BM325567.1|BM325567 PIC1_46_C01.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCACGAGGCCACATCGAGCCGGGAAGATTTGGAATCCAGCTCAGATTTCGCTCCTCTCTCTCCCTCCCTGCCCTCCCTCCGCCCTGGCGAGCCCCCCGCGGGCGACGTGTGTCCCGTCTGCCTTTCCTTCGCTTCGACGGCCACCTGTTGGCCTCGCATGGCTCTGCTGCCTAGTGCCTCCCTGCCAAGCGTCTCGAAGCTCCCGCTCGCCCGCGGCGGCCCAGCGCCGCGGCGTCGTCAATCCAGCCAGATCCGCGCGATCCCCGCTAATCGCCGCCTCAACTTCTCTACTTCTCTAGCTCATCCGCGTCCCGGCTCGATCGGCACTGCCTCCTCCTCGCACTTCCCTTCTCTTGTATGATTGTATCTAGCCCGGCCCCCCATCGTCACAATTCATCGGCAGCGGCGCGCCCGTCGTCTCAGATTAATGCAAGGGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAGAATTGGTTTTTGAACCATACCGATNATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAA | |||||||||
gi|30977829|gb|CD234364.1|CD234364 SS1_27_H10.b1_A012 Salt-stressed seedlings Sorghum bicolor cDNA clone SS1_27_H10_A012 3', mRN TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): ATGGATCATGTAGCATACACAGGACAACCCTCAAGTTTGTTTCTACTTTGAAAAGTTTATCTAGTCCATCAAAATTCACAGCTGCTTGAGTGCATCAAATAAACATCCACATAAATGGTTTAAAGAAATCAGGAAGGCTGCATTTCCTTACACAGAAAGGAGCTCCATCAGTTTGTATTATTTCGATAGGAAGAAATCAGAAAACTAGTACAGGGGCAACATGGCTGGCACATTATGCAGAAGCCGCCAACAGCTCCCTTTCAGCTCGCTCGCGGATCCTCCTCTCCAACTCTGGCCTGAAGTGCCTGATAAGTCCCTGCACAGGCCATGCCGCAGCATCCCCAAGGGCACAGATAGTATGCCCTTCGATTTGCTTCGTGACCTCCTGAAGCATGTCAATTTCCTCTAGCTCATCCGCGTCCCGGCTCGATCGGCACTGCCTCCTCCTCGCACTTCCCTTCTCTTGTATGATTGTATCTAGCCCGGCCCCCCATCGTCACAATTCATCGGCAGCGGCGCGCCCGTCGTCTCAGATTAATGCAAGGGGTGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCA | |||||||||
gi|37708618|gb|CF759393.1|CF759393 DSAF1_44_G02.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_44_G02 TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): CAACCCTGACTTGCCACCCAGGCCACAAGCAAACAGAAGGGAGAGCCTGAGGCAACAGCTGCAAATGGCAGACAGAGGAATTGCAACAGTGGTGAGGCAGTTGATACAAAACCAGAGTATAGTTAGAGGCCTACCAAGCCCAACAGGGATCGAAATGAATGTGATTCCTTCAGGCCGGCAAAGGGCTAGGGCTCGGAGACAGCAAAGGCAGGATAATAATGCATCACCTTCCATACATGTAGCGCAGAATATGGGCAATGTTGCTTCTGAGAGCAGCAATCAAATCCAGTTGCCACATTCTAATGGCGACAGTGCTGCACAGATGGTTCTTGCAGCTCCTCAGCAGACATCGTCTGTCGAACAGCTGTCAACTTCTAGCACCACAGCTGTTATAGTGGGCGAGCCTGGGTCAAGTAGGCGGTCAAGGCCTTTGGAGTCCCCACCCATA | |||||||||
gi|9296098|gb|BE354988.1|BE354988 DG1_10_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GTAGCCTTCTCCTTTTGCAGGGCTCCTGCTGGCCGGGCTTCCCAGTCTCTCCATTGCTATCCGTGCGTGTACCTGCGCCGTGTGTGGTGCGCGTGCAAGACCGGCCAGACGCAGCTTGACGACGATGGGGCGCGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAACGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGGCATCCTCTGTGATGCGGAGGTCGGACTGGTCATCTTCTCCAGCACCGGTCGGCTCTACGAATACGCCAGCACAAGCATGAAGTCAGTGATTGATCGATATGGTCGAGCGAAGGAGGAGCAGCAGCTTGTAGCAAACCCCAACACAGAACTTAAGTTCTGGCAAAGGGAGGCAACAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGACAA | |||||||||
gi|9851777|gb|BE596704.1|BE596704 PI1_58_F04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCACGAGGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAAAGCCACAAGTATGGTCTGCAATTGATTCTGAAAAAAAAAGGATCACTCATCAATAGGAAGTTTCAATGACACATGAAAAACTTCATAGAACATAAAAAAGTGAAACGTTTCAACCAAGGATTAAGTAAATATATAGTTATTGAAGACATTAACAACATTCATTATTTCAG | |||||||||
gi|34441374|gb|CF428673.1|CF428673 PH1_17_F03.b1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_17_F03_A002 TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): AAAATAGATGAAACATTGAAAACAACTATTGCAACATATGTATACAACAATTGCAACATATATACAACATCTTAGGCAAAATAAACTTTACCCAACACCTTAATATACTTTTGCAACATCTATATTAAACACTCGCAACATACCTCTGAAACATGTGAAACATACTCTTGCAACATGCGTTTTCCACCTTCCTCCGTGCGACGCAGAGCAGAGCGAAAATGGTCGGTTCCGGCCAGCCGGCGGTCGAGGATGGTGGCATGGCCTGGCAGTGGCCAGCTGCGCCTATGCCCGCCTGGGCCAGCAACGACTCCTCTCCTAGGGTGGTCCTAGCGACGACCGTGAGCGGGATGTGGACGCTAGGCCGTGGCACTAGGCATTTGCCCCCCATGCTTGAGGCAACAACGGCGGTCAGGTGGCTGCAGTCTCCCTCTCCATGAGTGATGAGCGACGATCAAGCAACAGTGCCAGTCGGTCGACAGGTTTGCTGCCTGTGGCAAGCGGCAAAAGCGAGCGAAGGGGCGAGCGGTGCAGTGGAGACATAGCTGGTCATTCAACACAACTCTCCACGGATACCAATTATGTCCTCTTCTAATATACACATATTCATGTTTTTTTGAGACCACCGTACGTGTACATACACATA | |||||||||
gi|6859541|gb|AW287549.2|AW287549 LG1_242_D10.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCACGAGGAAGATTTGGAATCCAGCTCAGATTTCGCTCCTCTCTCTCCCTCCCTGCCCTCCCTCCGCCCTGGCGAGCCCCCCGCGGGCGACGTGTGTCCCGTCTGCCTTTCCTTCGCTTCGACGGCCACCTGTTGGCCTCGCATGGCTCTGCTGCCTAGTGCCTCCCTGCCAAGCGTCTCGAAGCTCCCGCTCGCCCGCGGCGGCCCAGCGCCGCGGCGTCGTCAATCCAGCCAGATCCGCGCGATCCCCGCTAATCGCCGCCTCAACTTCTCTACTTCTCTAGCTCATCCGCGTCCCGGCTCGATCGGCACTGCCTCCTCCTCGCACTTCCCTTCTCTTGTATGATTGTATCTAGCCCGGCCCCCCATCGTCACAATTCATCGGCAGCGGCGCGCCCGTCGTCTCAGATTAATGCAAGGGGCGGTGACAAGCTAGAGGCAGCAACTGCATATCTTGCAAGAAAATTGGTTTTTGA | |||||||||
gi|18061262|gb|BM323459.1|BM323459 PIC1_19_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TGCAGTTGTTGTCTCAAGCTT EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTCTAGCGCTAGGCTACCTAGCTTCCCGTCTCTTCCCCATCAGATCAATCGTCCTGGCCGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAGAGCCACAAGCAACTAATGGGAGAGGA | |||||||||