| mature miRNA: TGCATTTGCACCTGCACCTT species: Centaurea solstitialis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|124665788|gb|EH760528.1|EH760528 CNSL6623.b1_M23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL6623, TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GATTTTTCGTTACTGAATACATTTCTCAAGAATTGAATCCGGTTTCATGGCTTTATGCAGTGCAAGTAGTACAGCTGCAGGTGCAGGTGCAAATGCAAACTCAATGGTAGATATAATGACGTTCGTAGGATCTGATGCACTAGCCGAGCTAGTTTATTCTCCACGTAAAGGATTAAGCATCAAATTTGCCGAAAAGAAACCTTGTTTTATGCGGGAAGTTGGTCCAAACAATATGGATTTTTTAGGGTCTGAAGACACTAGAGATCAAAAACACGTCAAGTGTTCAAGCCCAGTCGAAACACCGAAAAGCACAAGTCATGGACCCACAGGTCCACAAAACCAAAAAATAAGCGATCCATTACTGGAACGCTTGTTTGAAGATGGAATGACTAGCGGTGTTCACAAGTCGGATTCCAATATTATATCACATTTGAAAATTGAACCCCCGACACAACATGGGCCCCACGAACATGTGGAAAGGTCTAAAACCGACAAAGATAACGACCCTTTTCTTGAAAACACACAAGATGTTGAACGGGTCGGTTTGTTTCAACGTGAAGATAGGGAAAGATCGATTTATTCTCGAGAAACGGATCAAAAACTCGAGGTTGAGAGCCACGGAAGCATGGAAAGTTGCGAAAACGCTACTTCTCTGGCCAAAAGAAAGACGAGATTGACGTTCGAAGAACAATTGATTCATGGAACCAAAAGAATAAAGAAACAAGCCAATCATTATGATC | |||||||||
gi|124678486|gb|EH773226.1|EH773226 CNSM5682.b1_D06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM5682, TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): TTTCTTGGTAGGAGAAGGAACCGCTGCTCCTCAACTGGACGGAGCTCGCAGTAACTGCGGTGCAGGCCTAGATATCGGGGATTCTTTTACACTATGACATCCGGACAAGATTGCTGCAGGTGCAAATGCATGTGGCGCTGCTTATAGCTACTCGAGAATAAAGGAAGATGTTCAGTTGTTGAGGAAAATGGGCGTGAACTCTTTCAGATTCTCTATTTCATGGTCAAGAATATTACCAGGTGGGAAAGTGAACATGGGTAAAAATCAGGAAGGCATCAATTACTACAATAAATTGATTGACGAGTTACTATCCAATGGCATCGAGCCATTTGTCACAATTTTTCACTGGGATCTTCCTAATGCCTTGGAAGAAGAATACAAGGGTTTTCTAAGTTCAAAGATTGTGTCCGATTTTGTCAATTATGCTGATATTTGCTTTTGGGAGTTTGGGGATCGGGTAAAGAATTGGTTGACAGTAAACGAGCCACGTATGTTCATACATTACGGGTACGTAACAGGTACATGTGCACCTGGTCGAGGTGAAAAAGGGAAAGATAACGACCTTGAAACAGAGCCATATACCGTCGCATATAACCTACTCAATTGTCATGCAGCTGTTTATAGAAAGTATGAGAAAGATTATAAGGGTTTTCAAATGGGTAAAGTGGGAATCACCCTACATCTT | |||||||||
gi|124665788|gb|EH760528.1|EH760528 CNSL6623.b1_M23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL6623, TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GATTTTTCGTTACTGAATACATTTCTCAAGAATTGAATCCGGTTTCATGGCTTTATGCAGTGCAAGTAGTACAGCTGCAGGTGCAGGTGCAAATGCAAACTCAATGGTAGATATAATGACGTTCGTAGGATCTGATGCACTAGCCGAGCTAGTTTATTCTCCACGTAAAGGATTAAGCATCAAATTTGCCGAAAAGAAACCTTGTTTTATGCGGGAAGTTGGTCCAAACAATATGGATTTTTTAGGGTCTGAAGACACTAGAGATCAAAAACACGTCAAGTGTTCAAGCCCAGTCGAAACACCGAAAAGCACAAGTCATGGACCCACAGGTCCACAAAACCAAAAAATAAGCGATCCATTACTGGAACGCTTGTTTGAAGATGGAATGACTAGCGGTGTTCACAAGTCGGATTCCAATATTATATCACATTTGAAAATTGAACCCCCGACACAACATGGGCCCCACGAACATGTGGAAAGGTCTAAAACCGACAAAGATAACGACCCTTTTCTTGAAAACACACAAGATGTTGAACGGGTCGGTTTGTTTCAACGTGAAGATAGGGAAAGATCGATTTATTCTCGAGAAACGGATCAAAAACTCGAGGTTGAGAGCCACGGAAGCATGGAAAGTTGCGAAAACGCTACTTCTCTGGCCAAAAGAAAGACGAGATTGACGTTCGAAGAACAATTGATTCATGGAACCAAAAGAATAAAGAAACAAGCCAATCATTATGATC | |||||||||
gi|124672307|gb|EH767047.1|EH767047 CNSM13293.b1_I12.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM13293 TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): CGCGGGGATGACGATGGAGCTGGGAGGCCTAGTCCATACATGCAACCACCTTCTCCGTGGTTAACCAAAGGCCCCCTCTTGATGTTAATGTTGCTTATGTGGAAGGGCACGAAGAGGTCGAAAGAGGAGTAGCCAGTCAACCCACGACTCAGGATTTCTTTCAAGCAACTACTGGGAAGCGGAAGAGGGATGATTTTCCTCCACAATATCGTCCAGGTGGATACATTCCACAGCAAGATGGAGCTGGAGATGTGTTGGCTGATAAGTCTGAGGTTGGTGAAGGAAGTGGTTCTCGACCTGGCATTGTCATTGCTGATAACAGAAAGCTAGGGCACGGACTTAAGTTGTCTCCTAAAATTCCTCAATTGGATGGGCCTATTCCCGATCCCTATGATGATGCAGTTTCTACACCAAATATATACAACTACCAAGGAGTTGTGAATGAAGACTATAATGTAGCAAACACACCAGCACCCCCAGAGCTACAAGCACCGACTCCTGCCATGGTCAGTCAGAATGATGTTATAGATGACGATGAAGACGAGCCTTTGAATGAAAATGACGATGATGATGATCTGGATGATGTGGACCAAGGCGAGGAATTAAGTACACATCACCTTGTTTTGGCTCAATTTGACAAGGTGACTCGTGCAAAGAGCAGGTGGAAATGCACTCTCAAAGACGGAATTATGCACATAAACAACAAGGACGTTTTGTTCAATAAGGCAACAGGCGAGTTTGACTTCTAATTATGTCCAAAATGAGCCCGGAAAAATAGCCAACTAACGGCCGCTACTATCTGATTAATAGC | |||||||||
gi|124680808|gb|EH775548.1|EH775548 CNSM7834.b1_D15.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM7834, TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GTCATTTTCAACCCTATACCGCATCGATGACTCCCTTGTTCTATTCCCACTACCTAAAACAAGGGTGCAGTGCAAAAGCATGGGCTGATTTGATCTCTATCCGATTGACGAGCGCGATGATGTGAATCCGTTCGCCGATCACGGAGCTGGGCGCGGAGGCCCTGGCAAGACATATTATACTGGAGGTTCATTCTACACATCAAGTGTTCCCTCTGCTGCAAACTCTCGGCTATCACCTCTTCCTCACGAACCTGCAGATTTCTATGATAGGAGTGCCCCAGTTGACATCCCTCTTGATTCAGCTGCAGATTTGAAGAAGAAAGAGAGAGAGTTGCAATCCAGGGGAGCTGATTTGGGGAAGAGGGAAGAGATAGTAAAACGGAAAGAAGAAGCAGCTGCGCGAGCTGGTATCGTTCTTGAGGAGAAAAATTGGCCACCATTCTTTCCCATTATTCATCATGATATTGCAAATGAGTTCCCGATTCATCTACAGAAATTGCAATATGTTGCATTCACAACATACTTGGGATTAGTGCTCTGTCTTCTGTGGAATATTATAGCCACAACAACAGCTTGGATTAAAGGAGAAGATCCGAAGATTTGGTTTCTTGCTCTAATCTACTTCATCTCGGGAGTTCCACTTGCGTACGTGTTGTGGTACCGGCCTCTTTATCGTGCATTTAGGAGTGAAAGTGCATTGAAGTTCACTTGGTTCTTCTTATTTTACTTGGTTCATATTGGCTTCGTCATCTTTGCTGCAGATGCCCCTCCCGTTGTCTTCA | |||||||||
gi|124695224|gb|EH789960.1|EH789960 CNSS30004.b1_G13.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS30004 TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GCGGGGGACAGGGAGACAACATGGCGGTGGTGGATTGAAGAACTTGCTGTCAGGTGTGGTGGACGAAACGGTGGAAGAGTTGCTAAACAGGGAGGAAAACAGGGCTTTGTTAGATGGATTGGATAAAGCTACACAGAGAGTTGAATTGGCCAAGAGAGAACTTGCTGAGATCCAAAAGCAAGAAATCGAAAGCGAAAAGATGAAACGATACATCAATCAGCTCGAAACCAGAGCAGCTGAGATTGATGAATGCCAGAAGGAAATATCGGAAGCAAGAGCACTGGTTGAAGAAGCGGAGCGCTCTCTTGAAGTTGGAGTTGGAGGTGCAGATGCAACAATGACAGAAACAGAAAGAGAAGCGATGTACAAAAACAAAGAGAGGTTTGAATCTGTAAAAGCTGCTGCGGTTTCTGCCATTGTTGGCACCTTGGCAAGCTTGCCTATTTCCTTATCTCAAGTGACTGAAACTTCCCAGCTGTTACTCCCTTCAGCAATCACTCTCATCAGCTGTGCATTATTTGGTGTGACCTTCCGCTATGCTGTTCGTCGTGACTTTGACAATTTTCAGCTCAAGACTGGAACTTCTGCAGCTTTTGGCTTTGTCAAAGGCCTTGCTACCTTAGGAGGAGGCCCACCTATGGAGTTGGAAGTTGGTAGTGTATTGTCACATGCTTTCAGTGGTGCAGTTGTTGTATCCGAGAATCTTCTAATCTTTCTGTTTGCCACTGCTGGTTTGGATTTCTGCATTAAATTGGGGATTTTAAGTCCATTCCGAATTGAACATCAGATTCAAAAACAAAACGTGAATGAAACCGTCT | |||||||||
gi|124683104|gb|EH777844.1|EH777844 CNSS16665.b1_B15.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS16665 TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GGAGAGGGACGATTTTCCTCCCAATACCGTCCCGGTGGATACATTCCACAGCAAGATGGAGCTGGAGATATGTTGGCTGATAAGTCTGAGGTTGGTGAAGGAAGTGGTTCTCGACTTGGCATTGTCACTGCTGATAACCGAAAGCTAGGGCACGGACTTAAGTTGTCTCCTAAAATTCCTCAATTGGATGGGCCTATTCCCGATCCCTATGATGATGCAGTTTCTACACCAAGTATATACAACTACCAAGGAGTTGTGAATGAAGACTATAATGTAGCAAACACACCAGCACCCCCAGAGCTACAAGCACCAACTCCTGCCATGGTCAGTCAGAATGATGTTATAGATGACGATGACGAGGAGCCTTTGAATGAAAATGACGATGATGATGATCTGGATGATGTGGACCAAGGCGAGGAATTAAGTACACATCACCTAGTTCTGGCTCAATTTGACAAGGTGACTCGTGCAAAGAGCAGGTGGAAATGCACTCTCAAGGACGGAATTATGCGCATAAACAACAAGGACGTTTTGTTCAATAAGGCAACAGGCGAGTTTGACTTCTAATTATGTCCAAAATGAGCCCGGAAATAGCCAACTAACGGCTGCTACTATCTGATTAATAGCTCAAGTCCACCACTTTTTGAGTTAAAAAGAGAAGTTCATAGAAGGGGAAAAGCATACCAGCTGTATATAAAGTGGGAGAGCTTCTTATTTGGCCCTGGTATTTAATTCATGGCTACTTTGAGTTACCTGCAGAAACTTGACCTTTCTTACATGG | |||||||||
gi|124688220|gb|EH782956.1|EH782956 CNSS21800.b1_P02.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS21800 TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GCGGGGAAGGTGACGGTGGAAATGCGACAGTTGTACCCATTTCGACGTACGATGATCTTAAAAGCATTATTCAAAGAGGCACAGATCAACGGCACACAACGGAGACTCTAATGAATGAAGCGAGTTCAAGGTCTCATTTGATACTATCGATCATCATTGAGAGTACCAACCTCCAAACTCAATCAATTGCAAGGGGAAAGCTGAGTTTTGTTGATCTTGCTGGTTCTGAAAGAGTGAAAAAGTCGGGGTCTGCTGGTACACAGCTAAAGGAAGCTCAAAGCATCAATAAGTCACTGTCGGCACTTGGTGATGTTATAAGTGCTTTATCTTGCGGCAATCAGCACATACCTTACAGGAATCACAAGCTCACAATGCTGATGAGTGATTCACTTGGTGGAAACGCCAAGACATTAATGTTTGTCAACATCTCTCCGGCTGAGTCAAACTTGGAGGAAACTCACAACTCTCTTACATATGCATCGAGGGTGCGATCGATTGTAAATGATCCAAGCAAGAATGTTTCATCAAAGGAAGTTGCACGGTTAAAGAAGCTGTTGGCATACTGGAAGGAGCAGGCGGGCAAAGGAGGGGATGATGAAGAACTGGTAGAGATCCAGGATGAACGGTCCCCAAAAGATAAAGGCGATAATCGACATTCCATGTAGAGTTCACACACCCACACCATGTTTGGATTTGAATCATAAGATATTGCGACTAATTTACAAACGGATGAAGATGCATTTCAATCACTAACCATGTAGGAAGCATTCATTCTAGTGTCAAAAAGTAAGAAGTTGTTTT | |||||||||