| mature miRNA: TGCATTTGCACCTGCACCTT species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|212154300|gb|CU584406.1|CU584406 CU584406 OVULEI_KZ0AAB Theobroma cacao cDNA clone KZ0AAB24YD09FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): CGGGCAGGTGGTGGCGGTGGAAACAATGACAATGGAAGAGGCAAAGGTGGTGGTGAAAATGCAGGTGATGAGAACAGGGAAGAGGCGATGATTTTGTTGGCAGAGGCTGGGAGGTCATTGGAGAGTTTACCGAAGGACTTGGCGGCTGCGATCCAAGCAGGGAGGATTCCTGGGTCGGTTATAGAGAGGTTCTTGGGGCTTGAAAAATCGGGGCTTATGCAGTGGTTGATGCAGTTTGGTGGGTTTAAAGAAAGGCTTTTGGCTGATGATCTTTTCTTAGCTAAAGTTGCCATGGAGTGTGGGGTTGGGATCTTCACAAAGACAGCTGCAGAATATGAACGTCGCAGGGAAAACTTTTTCAAGGAGCTCGAAATTGTTTTCGCGGATGTGGTAATGGCAATAATTGCAGATTTCATGCTTGTTTATCTTCCTGCTCCTACTGTCTCTCTCCGGCCTCCTCTTGCAGTCAGTGCTGGAGCTATTTCCAAGTTCTTCTACAGCTGCCCTGATAATGCTTTCCAGGTTGCTCTTCATGGAACTTCATATTCACTTTTGCAGAGATTAGGTGCAGTAATGCGTAA | |||||||||
gi|212320723|gb|CU530757.1|CU530757 CU530757 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK10YH06FM1, mRNA sequence TGCATTTGCAC-CTGCACCTT EST sequence (targeted fragment marked with yellow): CGGGGAGAATCCCTCTTGCTAACCTTGAATCAAACACATCGAACTGTACACGACTGAGGGAATCCAACAGAACTTGGGCGGGCACAGCTGGTAGAAGTGCTTTACGAGCCCCAGAGGGAACAGCGTCTGCTAATTCACGAGCTTTCAGCAAATGTGCATTGGCTGCTGATGCAATTTCAAAAACCGCATCACATAAGCCCTCACGAGAATCCAAGTGTATCTCTGATCGACCTCCCTCCTTAACTAGCAGCCCATGCTTGGCTGCCACTTTAGCTGGTATGTAAGAAAAGTGACGGTTGCGGCTAGCATGGTATGGCAGCGACTTAAGTAGCAAAAGAAGGCCACTTGCCTTACCAACATGCGATGCTGCATGGTCAACTGCAGTGGACCCGATACCACCAGCTTGAAGAGTCATGTATAGAAGAGTTGATGCTGTATTCTCTGCATATTTCTCTAAGTCCTCAATACTCTCTGATATCACTGAGGAGAGGGCCTGTGCTGTTGGGTGTTCAATTAATTTGTTAGCATAAATTTTGTCAATGGCTTCTTGCCACCAGACAAGGCGCATGAGACCAATCTTGGGAGCAGAAGCAACATCCATAGCTCTGGCAGTTTCAACATTGAAGGCGCGGAGTGCAAATGCAGCCTTTCGCATGTTAGGGGGAAGCTCAAGAAGGCAGAGGTAATGATGATAATCATAGCAACGCACTTGCTGTACACAGTAGGAGAAAGCTGCCCGTAAGCTACT | |||||||||
gi|212117146|gb|CU516501.1|CU516501 CU516501 ROOTS_KZ0ABF Theobroma cacao cDNA clone KZ0ABF5YO12FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): CGGGGACGCTCTTACCCCTTCAAACATGCTAAAACCCGCAACGATTTTTTTTCCATAAAGAGACAGTGTTTCAATGTGACAGGCAGAGGCTATATATATAGATCTTTGATGGGTCTTTCTGCTTATATGTTCTTGAGTTGTTTGTAGACATTTTTAAAGGGTTTGAAGATGGGTAGTGGGGGAGGTGGGCAATCTTCTCATCCTCAGAGCTTAAGCATCAGAGAATTTATCTGCCACGGGGGTGCAGGTGCAACTGCAGGTTAGCTTTACTTAATTGCTCTTTTGATTCATTCTTTTAGGGTTTCCTTTGTTTAGTCAGTTATTGCAAAAAAAAAAAAAAAA | |||||||||
gi|211974863|gb|CU485369.1|CU485369 CU485369 CUSHIONC_KZ0ACAC Theobroma cacao cDNA clone KZ0ACAC4YG01FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GTACGCGGGGGGGGAGGTGGGCAATCTTCTCATCCTCAGAGCTTAAGCATCAGAGAATTTATCTGCCGCGGGGGTGCAGGTGCAACTGCAGGCGCAATTGCAGCCACTTTTGTGTGCCCTTTGGATGTAATCAAAACAAGGTTACAGGTACATGGCCTCCCTGAAGCTTCACAATCTGGTGCCAGAGGTATTGTAGATTCTCTGCTTTTGAAACTAATTTTTATTTGCGGTGCATGGTTTAGCAGAAGTACTTGGCTTGAATTTGTTCACTTCTATAACACTGGATTATTGGATAAGCTGAGACAGTAATTGAGATAGAGGGTTGATGTTAGTCTGTCAATTCAGATTTTTTTCATGTAAGTGTCTGCTTAGGATCTTCTTTGGAATGCAAGAATTCTTGCTTTGTTGGGTTGCTCCATACCATATGGAGTACAATGTATCTCAAATTCTACATTAGGAATAATTTTTTGTCAATTGCTGAATTCGTGGCTCTGATAGATTTTGGTCATATGAACTGC | |||||||||
gi|212316887|gb|CU537834.1|CU537834 CU537834 TISCIVS_KZ0AAQ Theobroma cacao cDNA clone KZ0AAQ9YD22FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): GATTAAGCCGTGGTATCCACGCCGAGTACGCGGGGGTTTTTTTAGTAAGAAACAAGAAAGCGAAATTAAGATTCGGAGAGACCAAAACCATCGCGACCGTGAAAATGATCGCTGACGGAGTCGAAGACGAAGAGAAATGGCTCGCCGCCGGCATCGCCGGCCTCCAACAGAACGCTTTCTACATGCATCGCGCTTTGGATTCCAACAATCTCAGAGATGCTTTGAAGTATTCTGCTCAGATGTTGTCTGAGCTTCGAACCTCGAGGCTTTCCCCTCACAAATACTACGAACTATATATGCGAGCATTTGATGAATTGAGGAAGCTGGAGATGTTTTTTAAGGAAGAAACGAGGCGTGGTTGTTCCATTATCGATCTGTATGAGCTCGTGCAGCATGCTGGCAATATATTGCCTAGATTGTATCTTCTTTGTACTGTAGGCTCTGTATATATCAAATCCAAGGAAGCTCCTGCTAAGGATGTTCTCAAAGATCTTGTTGAAATGTGCCGTGGCATTCAGAATCCTGTGCGCGGGCTCTTTCTAAGGAGTTACCTGGCTCAAGTTAGTAGGGATAAATTGCCTGACATAGGTTCTGAGTATGAAGGGGATGCAGACACTGTAGTGGATGCTGTGGAATTTGTTCTTCAAAACTTTACAGAGATGAACAAGTTGTGGGTGCGAATGCAGCAGCAGGTGTTATTGTGCTTGTCAATCATTCATACTCTTAGCTGATCCTGAGTTGAGGCTTGCTG | |||||||||
gi|212120841|gb|CU514524.1|CU514524 CU514524 ROOTS_KZ0ABF Theobroma cacao cDNA clone KZ0ABF4YE23FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGCAAGTGGTTTTGTCTTTGTTTTTGGTGCTGTAGTGACTTTTTCTTTCCCTTTTCCAGAATTTGCTTTCACTCTAGGGGCTGGTGCAAATGTATCTTGCTGAGCTTCTACCTTGGTAGCTTCCTTTTCAGCCTGTTTTTCCCTAACCATTTGGTGGACGACATCCATAAAGGATATCTCTTCCAAATTTGGAAGGGAGGGCTGCTGTTTCTCAGGTTCTGAAGGAACATTTTCATCCAGTGAACCTAGCACTTCTATTCCTTGTTCTAATTTATCTTTGCTTTGATGATCAGGTGAGGGGGCCTTAGCGGGATGATCAACACCAAGGTGAAAGTCCTCTGTCTGAAGGACAGTGTTAACAGTTTTGAAAATGGAACCTTCACCTTGAACACCAAAACTTGCTCCATGAAAAGCAAACCCATCGGCTTGCAAA | |||||||||
gi|223632961|gb|ES442338.1|ES442338 TSH_EST00836 Theobroma cacao-Moniliophthora perniciosa incompatible interaction library Theo TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): AAGGAAAAGCATCTCATGTTCCATATCGAGACTCCAAGCTTACCCGTCTATTGCAATCTTCACTGAGTGGACATGGACATGTTTCACTAATTTGCACAGTTACACCTGCATCTAGTAATATGGAGGAAACTCATAATACCCTGAAGTTTGCAAGCAGGGCAAAGCGAGTGGAAATCTACGCCTCGCGTAATAAGATTATTGATGAAAAATCATTGATTAAGAAGTATCAAAGAGAAATTTCAGTCCTCAAAGAAGAACTTGATCAGCTAAGGCAGGGAATGCTTGTTGGTGTTAGTCATGAAGAACTTATGAGCTTAAGGCAACAGTTGGAGGAAGGTCAGGTGAAAATGCAATCTAGATTAGAAGAAGAGGAGGAAGCCAAAGCTGCTTTGATGAGCAGAATCCAAAGGCTTACCAAGCTTATACTTGTTTCTACCAAAAATACCATCCCAGGATGTTTGAGTGATGCACCAAGTCATCAAGGAGTCATTCTGT | |||||||||
gi|213165892|gb|CU630741.1|CU630741 CU630741 COTYLEI_KZ0ABB Theobroma cacao cDNA clone KZ0ABB6YJ02FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTCAAGGTTGAAACATTAACAAATGTAAACCAATTCAAACAACATTATTAACTCTAGCAAAAAAAGTACGGAAATTTTACACCTCTAAAAAAATAAGGGGCAATTTTTACCGTATACATATACATACATGCCTACCTATATGTAAAAAACTATAGGTATATGTATTTGAATGGATATGTCTGCGTTAACTATAAGGTATCTATGTCTATGGAAAGTACGTTTTGTATAAGCATAAGCCCAAAAACAAAAAATTACAGCTTGAAATCATTTGTTTTCTACCTTAAATAGGAAACAATATTGTAAAGATAACTTCCATGGGATGTGCACCAAATTGAAAGCAAAAAATAAAACCAAGAGGCCATTTGTCTGCACCTGCATCTGCACCTCTCCCCGTCCAACCAACAAAATTTCGGCAACCGTCCATGGAAAATGTTGTTCATCTCCCTGGCTGCTGGAAGTGTAAAAAAAAAGGTGCAGGTGCAAATGCAAATAAATGGAAACTTGTTGGATATGTCAAAAGTTGGGCCCC | |||||||||
gi|213166781|gb|CU632075.1|CU632075 CU632075 COTYLEI_KZ0ABB Theobroma cacao cDNA clone KZ0ABB1YF03, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTAACAAAAAAATGTGATAAATGATAGTTGAAATGTAACAACATAACCAACAGTAATAAAACTTAATTTCAAAAACAATATAACAAATGGTCCAAAACTGCGCTCATCAGTAAAAGCAAAGCATCCATTCTAAGCATAAACACTACAAGCTAATAAAACACAGGACCTGCCAGCATTCATCCAACTGATGTGCTTCTTTAAACAAAAACAACTCCAGATATCTATCATAAAATTTATGCAGCAGCTTGGGCTGCAAGCCTCTTTCTGGCTTCTTCAATGATGGACAACTTGATACCCTTGCCCTTAGGAAGTGACACCCATGGCTTTGTCCCTTTACCAATTGTGAAGACATTCCCTAAACGAGTTGCGAACTCATGCCCAGCAGCATCTTGAATGTGGATTGTCTCAAAGCTACCCTTATGCTTCTCCCTGTTCTTAATCACTCCAACACGTCCCCTGTTCCTTCCTCCAGTGACCATGACAACATTCCCAACATCAAACTTAATGAAATCAACAATTTTGTTGCTCTCCAGGTCAAGCTTGATGGTGTCATTAGCCTTGATCAGAGGATCAGGATAGCGGATGGTGCGTCCGTCATAGGTATTGAGGTATGGAATACCCTTCTGGCCAAATTGGACAGATCTAACCTTGCAGAGCTTGAACTTGGTCTCATCACCTGTGATTGCATGAAGGCGAAAACGACCTTTTGTGTCATAAAGGAGACGGAAGTCCTCATTTGTCTTGGGAATTGACACAACATCCATGAAACCAGCAGGATAGGTCTTATCTGTCCTAACCTTCCCATCTACCATAACATGCCTTTGCATAAGAATGGCAATCACTTCTCTATATGTCAGAGCATACTTTAATCTGTTTCGCAGAATGAGAATCAGTGGAAGGCATTCCCTGGACTTGTGGGGTCCAGATGATGGTTTGGGTGCAAATGCACCGCCAAGCTTGTCAAGCATCCAATGCTTAGGGGCATTGAGCCTCTTCAAGTGTTTCTTCAACCCTCTAGCCATTTTGGGGGGATGCGGCTGTATCCGCTGAAAGCCTTTCTTGTATGAGGATGCGAGCAAGAGGGAGACCCCCG | |||||||||
gi|212116587|gb|CU516246.1|CU516246 CU516246 ROOTS_KZ0ABF Theobroma cacao cDNA clone KZ0ABF10YK05FM1, mRNA sequence TGCATTTGCACCTGCACCTT EST sequence (targeted fragment marked with yellow): CGGGGACGCTCTTACCCCTTCAAACATGCTAAAACCCGCAACGATTTTTTTTCCATAAAGAGACAGTGTTTCAATGTGACAGGCAGAGGCTATATATATAGATCTTTGATGGGTCTTTCTGCTTATATGTTCTTGAGTTGTTTGTAGACATTTTTAAAGGGTTTGAAGATGGGTAGTGGGGGAGGTGGGCAATCTTCTCATCCTCAGAGCTTAAGCATCAAAGAATTTATCTGCCACGGGGGTGCAGGTGCAACTGCAGGTTAGCTTTACTTAATTGCTCTTTTGATTCATTCTTTTAGGGTTTCCTTTGTTTAGTCA | |||||||||