| mature miRNA: TGCATTTGCACCTGCACCTTG species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188293480|gb|EY660239.1|EY660239 CS00-C1-101-020-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): GCGAGGGNTGAAGACCACCACCGCTTCCACACAAAGAAAACATGTNCTGGNTCTAAAATAAGAGTTTACCCAACGGCGTATATTATCCTCCTCCTGCTATCCTACGCCCTGGGTTACCTATCCTCCCCCAAACCCCACACACCACCACCACCACCACCATCACGTCCACGTGCAGGTGCAGGTGCAGGTGCAGCCCCAGCCACAGCCACAGCCACTTCAAATTCAACCATCCAGCTTCCTCCAAGTCTACTAGACAACTTCCGAGTCACGACTCGCTGCGCCGCCGACTCTGTTCCTCCTCAACTCGTCCGTCAAACCATCATTGACCGAATCTTCAACGGCACCTCCCCTTACGTCAATTTCCCGCCGCCGCATATTAGTCACCTACTTCGCCGGCGTCGCATCAAGGGGTGGGGCTCCTACGGTGCCGTTTTCGGAAACCTCATTGATAAAGTCAGGCCGCGTGTCATCATCGAAGTAGGGTCCTTCCTCGGCGCCTCAGCTCTTCACATGGCCAACTTGACCCGCCAATTGGGACTCGATTCTCAGATTCTCTGTATCGACGACTTCCGTGGCTGGCCTGGGTTTCGCGATAAATTCAAGGACATTCCGATGGTAAACGGCAACGTTTTACTTTATTTCCAGGTCCTGCAGAATGTCATTTATCAAAACGCCATCGATTCTGTTTTGCCCTTGCCGTTTTCCAGCGGCTCGGCTTTAACAAACTTTGTGAGGGGGGATGGTGGGTGATTGATAAAAATTGACGCGGCCTGACTTTAACTCGGCTGGCGGATATCACCGGGCTTGCGGATCTGGAACCGGGGGGGAAATTTTGGCCAAATATTTACTGATGG | |||||||||
gi|188220453|gb|EY706203.1|EY706203 CS00-C3-701-053-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGCTACGCCCTGGGTTACCTATCCTCCCCCAAACCCCACACACCACCACCACCACCACCATCACGTCCACGTGCAGGTGCAGGTGCAGGTGCAGCCACAGCCACAGCCACAGCCACTTCAAATTCAACCATCCAGCTTCCTCCAAGTCTACTAGACAACTTCCGAGTCACGACTCGCTGCGCCGCCGACTCAGTTCCTCCTCAACTCGTCCGTCAAACCATCATTGACCGAATCTTCAACGGCACCTCCCCTTACGTCAATTTCCCGCCGCCGCATATTAGTCACCTACTTCGCCGGCGTCGCATCAAGGGGTGGGGCTCCTACGGTGCCGTTTTCGGAAACCTCATTGATAAAGTCAGGCCGCGTGTCATCATCGAAGTAGGGTCCTTCCTCGGCGCCTCAGCTCTTCACATGGCCAACTTGACCCGCCAATTGGGACTCGATTCTCAGATTCTCTGTATCGACGAATTCCGTGGTTGGCCTGGGGTTCGCGATAAATTCAAGGACATTCCGATGGTAAACGGCCACGTCTTACTCTATTTCCAGCTCCTGCAGAATGGCATTTACCAAAACGCCATACGACTCGGTTATTGCCGTGCAGTATTCAAGAGGGTCGGATTATATCATACTTCGTGACTGGGGAGTGGTGTTAGATTTGATAGAAATTGACCCGGGTGTGGACTTTAATTCTGGTTGGGTGTGTTTATATCAGCATTGCATGAACTTAAATCGTGGGGGGATATAAGTGTGGGATATATTTTTCTGTCTGTTATAATGGCTGGCCACGGCAGGGGCAATCCTCTCG | |||||||||
gi|188439509|gb|EY681662.1|EY681662 CS00-C1-650-024-E04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): TGAATGTAGAGAATGAGAACATAGAGCCAGTGACTGATTTGGGACTTGCACTAGGTTATTCTAGCCAATGCGTTCAGAGGAGATTGAACAGTGATTCAGGTGCAGGTGCAAATGCAGGCTCAAGGATAGACATGAAATTTGTGGCCACCAACCCCCTGTCTGAACTAGTTTGGTCTTCACGGAATGGTCTGAGTCTAAAATGTGCTGATTCTAGCTTTGTCGACAAAAAATCATATCTTATTTTGGGTGCAGGACCGAGCAATGTGGTTCTTTCACCATCTCAAGAGGTTTGCGCTGGGAGGTCTAGCAATGACAAACCTGTAAATGAAGAAAACTTCATAATGTCACAAGATGCATTTTATCTGATCAATGAAACTGCTGGTAGGAATATTTCGGGCTGGAATCCTGGAATTGATGTTGCCGTCATGCCTCACAGTGGAGCAGGTCATGAAGATAAGACAGGAATTGGACTTTACTTGGAAGAAACAAAAGGTGAGATGGGAGTAGCTGGACAAATTAATGTGAACGAAAATTTTAAGAATTTGAAAGAGGATTGTATAGCTGGTCCTAGCAATATACAAGTGGCTGAGATATCCGAAACCAAGGATAAGTTATCTTCAAAATTTTCAGCTGATCTCAGACCTGATTTAGCACTAAATGAACCTCTATCTGGGGATCCTACTGGTGGTGGCAAAGATATTGCTAGTGGGAATCAAACCTCCAAAATGGAAATGGTTTTGGCCTCCAAATCCACCCCACAAAAAAATCTGAAGCAAATGACACTTTTATTGGCGAACCTTGAAATTCCCCAGGGAAAAAAAACCAAAAAAACTGCTTTCCTTCCCGGGAAAAAAAAAAAAAAAAAAAAAAAAATTGGCAAGGAAAAAATTTCTGTTTAGTTTTTCTCCCCTTTAAAAAAAAA | |||||||||
gi|188447609|gb|EY663293.1|EY663293 CS00-C1-101-053-F05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGTTTTGTGAAGTATGCAGGATTGACTAGGAGTGCCTCGTGCTGAAGATGAATGTAGAGAATGAGAACATAGAGCCAGTGACTGATTTGGGACTTGCACTGGGTTATTCTAGCCAATGCGTTCAGAGGAGATTGAACAGTGATTCAGGTGCAGGTGCAAATGCAGGCTTGAGGATAGACATGAAATTTGTGGCCACCAACCCCCTGTCTGAACTAGTTTGGTCTTCACGGAATGGTCTGAGTCTAAAATGTGCTGATTCTAGCTTTGTCGACAAAAAATCATATCTTATTTTGGGTGCAGGACCGAGCAATGTGGTTCTTTCACCATCTCAAGAGGTTTGCGCTGGGAGGTCTAGCAATGACAAACCTGTAAATGAAGAAAACTTCATAATGTCACAAGATGCATTTTATCTGATCAATGAAACTGCTGGTAGGAATATTTCGGGCTGGAATCCTGGAATTGATGTTGCCGTCATGCCTCACAGTGGAGCAGGTCATGAAGATAAGACAGGAATTGGATATTACTTGGAAGAAACAAAAGGTGAGATGGGGGTAGCTGGACAAATTAATGTGAAGGACAATTTTAAGAATTCGAAAGAGGATTGTATAGCTGGTCCTAGCAATATACAAGTGGCTGAGATATCCAAAACCAAGGATAAGTTATCTTCAAAATTTCCAGCTGATCTCAGACCTGATTTAGCACTAAATGAACCTCTATCTGGGGATCCTACTGGTGNCNGCAAAGATATTGCTAGTGGGAATCAGACATCCAGAATGGAAAANTTGTTTGCCTCTAAAGTCACCACACAAAGAATCTGAAGCAANTGACACTTTAGTGCGGAACTTGACATCCCCGGGAAAAGACGCGAGAATCTGCTTCCTTCTGNAAAAGAGACCAG | |||||||||
gi|188220453|gb|EY706203.1|EY706203 CS00-C3-701-053-F11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGCTACGCCCTGGGTTACCTATCCTCCCCCAAACCCCACACACCACCACCACCACCACCATCACGTCCACGTGCAGGTGCAGGTGCAGGTGCAGCCACAGCCACAGCCACAGCCACTTCAAATTCAACCATCCAGCTTCCTCCAAGTCTACTAGACAACTTCCGAGTCACGACTCGCTGCGCCGCCGACTCAGTTCCTCCTCAACTCGTCCGTCAAACCATCATTGACCGAATCTTCAACGGCACCTCCCCTTACGTCAATTTCCCGCCGCCGCATATTAGTCACCTACTTCGCCGGCGTCGCATCAAGGGGTGGGGCTCCTACGGTGCCGTTTTCGGAAACCTCATTGATAAAGTCAGGCCGCGTGTCATCATCGAAGTAGGGTCCTTCCTCGGCGCCTCAGCTCTTCACATGGCCAACTTGACCCGCCAATTGGGACTCGATTCTCAGATTCTCTGTATCGACGAATTCCGTGGTTGGCCTGGGGTTCGCGATAAATTCAAGGACATTCCGATGGTAAACGGCCACGTCTTACTCTATTTCCAGCTCCTGCAGAATGGCATTTACCAAAACGCCATACGACTCGGTTATTGCCGTGCAGTATTCAAGAGGGTCGGATTATATCATACTTCGTGACTGGGGAGTGGTGTTAGATTTGATAGAAATTGACCCGGGTGTGGACTTTAATTCTGGTTGGGTGTGTTTATATCAGCATTGCATGAACTTAAATCGTGGGGGGATATAAGTGTGGGATATATTTTTCTGTCTGTTATAATGGCTGGCCACGGCAGGGGCAATCCTCTCG | |||||||||
gi|188375519|gb|EY751772.1|EY751772 CS00-C5-003-090-H08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CTCATTTTAGCACCACACTATGCTGTAAAGAATAGCTTCAGTCCTTTTTTTAAATCAGTTTTAATTGTCTTATGAAATCCAATATGTTTCTGGCAAAATATATCATAGTAGTAGGTGGTCGATAATGTTGAAATCTTCTTCACTTTGTCTTTTTCTAAATTTGTGTTTATCAATTTTAATTGTTGGATTAAACCGGTTCAAAAGGATTCTGGTTCTGAGTTTTTTCTTCTTAAATTGTCTCTTTATGTTTCTGATTCATTGTGCAGATTCTACATAGTTCCATCAGTGTTTTAGTACTGGCCTGGTGATTCTTCTGACGTTTAAGGAGCTGGTGCAAATGAAGTCTTTATGTTTATGATGAATGTTACTATTTGGCCACTTCAAAGACCAGAATCTTAAAACTATCGGTTGGAGTTGGGAAAAAAAAATAAAAACACTAGAAGATGGGAGCGGAGGGTCTAACACACGAGAGTAGTGTTACGTAAAAAAGCGCAGAAGATCAAAGACGCCACCGGTCCCTAAGACGGGGCGGAATCCAACCATCAAGACAACCACCTGCCCTCGTCTCTCCAGCAAAATGCCACGATGGATGCCGGGGGGTTACACAAGAAGTTAAACTCAGGGGAAGAAGTGTAGAAATCAGACGTAGTAAAATACATACGACAGTGGAAAAAATAAAAAAGACGACAAACGAGAGAAGAATGCGAAAAGAGAGAACAAAAAAAAAATTGGACTAAAAAAACAATAGCAGCAGAAAAACGAAAACACATACGTTAAAAGATGAGAAAAACAAGGACATGAACCTCAAACCAAACCAAGAAAAAGGAAATGACATGTATGAGAAAGAAGCCAAAAACGAGAGATAAATGAAGAAGGGTAAAAGAAAATGACAACGAGAGAAAGAGGATAAGAAATAGANACAACGAGCTAGCACACAAGAATATGACAAACAATGAATGCAAAGAGAAAAAGGGCGTTGGGACTCAGAAGGATAAAGTAGACTAGATAAAAAGCGGGAATGAACTTAGGAATACCTGATAAGCATAACAGA | |||||||||
gi|188293480|gb|EY660239.1|EY660239 CS00-C1-101-020-A08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): GCGAGGGNTGAAGACCACCACCGCTTCCACACAAAGAAAACATGTNCTGGNTCTAAAATAAGAGTTTACCCAACGGCGTATATTATCCTCCTCCTGCTATCCTACGCCCTGGGTTACCTATCCTCCCCCAAACCCCACACACCACCACCACCACCACCATCACGTCCACGTGCAGGTGCAGGTGCAGGTGCAGCCCCAGCCACAGCCACAGCCACTTCAAATTCAACCATCCAGCTTCCTCCAAGTCTACTAGACAACTTCCGAGTCACGACTCGCTGCGCCGCCGACTCTGTTCCTCCTCAACTCGTCCGTCAAACCATCATTGACCGAATCTTCAACGGCACCTCCCCTTACGTCAATTTCCCGCCGCCGCATATTAGTCACCTACTTCGCCGGCGTCGCATCAAGGGGTGGGGCTCCTACGGTGCCGTTTTCGGAAACCTCATTGATAAAGTCAGGCCGCGTGTCATCATCGAAGTAGGGTCCTTCCTCGGCGCCTCAGCTCTTCACATGGCCAACTTGACCCGCCAATTGGGACTCGATTCTCAGATTCTCTGTATCGACGACTTCCGTGGCTGGCCTGGGTTTCGCGATAAATTCAAGGACATTCCGATGGTAAACGGCAACGTTTTACTTTATTTCCAGGTCCTGCAGAATGTCATTTATCAAAACGCCATCGATTCTGTTTTGCCCTTGCCGTTTTCCAGCGGCTCGGCTTTAACAAACTTTGTGAGGGGGGATGGTGGGTGATTGATAAAAATTGACGCGGCCTGACTTTAACTCGGCTGGCGGATATCACCGGGCTTGCGGATCTGGAACCGGGGGGGAAATTTTGGCCAAATATTTACTGATGG | |||||||||
gi|188402104|gb|EY736857.1|EY736857 CS00-C3-705-021-E01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CACGCGTCCGGGAGAAGCTTCAGCCCTCGCGTAAGAGCTGACAAGGCCCGTGCCTCTTGTCATCAATTTTGGCCTTTAACTTGAAACCCTCTCTGTTTCTTAAATTGATTGACTAGGAGTGCCTCATGCTGAAGATGAATGTAGAGAATGAGAACATAGAGCCAGTGACTGATTTGGGACTTGCACTAGGTTATTCTAGCCAATGCGTTCAGAGGAGATTGAACAGTGATTCAGGTGCAGGTGCAAATGCAGGCTCAAGGATAGACATGAAATGTGTGGCCACCAACCCCCTGTCTGAACTAGTTTGGTCTTCACGGAATGGACCGAGCAATGTGGTTCTTTCACCATCTCAAGAGGTTTGCGCTGGGAGGTCTANCAATGACAAACCTGTAAATGAAGAAAACTTCATAATGTCACAAGATGCATTTTATCTGATCAATGAAACTGCTGGTAGGAATATTTCGGGCTGGAATCCTGGAATGGATGTTGGCGGCATGCCTCACAGTGGGAGCGGTCATGAAGATAAGACAGGAATTGGGACTTACTTGGAAGAGACAGAGGGTGAGATGGGGAGTAGCTGGACACATTAATGTGAACCAAGATTTGAAGAGTGTGAGGGAGGGTTGTAGGGGGGGTCCTAGCAGGGTAGAGGTGGCCGGGATATCCGGAACGCGGGAGTGGGTGTGTTCGGGGGGTCCCCTGGATGGCGGACCCGGTGTGACGCTGAATGAGCCTCGTCCGGGGGATCTGCTGCGTGGTGCCAGGCTTTGGTGGTGGGAATTAAACGTCCCGATTGGAGATGGTTTGGCCTCCCCTGGCGGGGGGAGGGGCGGGCGGGGGGAGT | |||||||||
gi|55404210|gb|CV718409.1|CV718409 UCRCS08_0010H07_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGATGAATCTATGTTGTTTACAGGGTATATATTTCTTGTCTTTACCAATGTATGCCCAAAATAATGGCATCGATCATCCCTATGTGCTATGTGATTTCTTAAATACAATGTGACTGGATTCATCATTCTCAAACAGACGCTCAATCAAATCATTCCAGCTTTCTCTCGCTTGTTTCTTAGATGATAAAAGCGACGATGATTCTCCCTCATGTGAGCTATTACCTCTCTCTTCAGTGAAAGTACCATAAGGAGAAGGTGCAAAAGCATGCGGCACCGACAGTGAAACAGCCTTGTGTAGCGCAGCATTGTACTCCTGTGTGTGTTCTCTGGCTATAGTCTCCTGCCTCTCCATCTTTTGCTTCTCAGGTATCTCCATCGTGTGATCTTTCTCTTGCATTAGATTGAATGCTCTCTGGGCTTCTTTCTCTATCCAAATGATGGCGTGATCAGCAGTGGCATTACAAGAAAGAACTATATGTTCAAACCTCCCGTCTACCGGCACAGCTGTCCTCACAACTGGGGGAAATCTTCCCAATCTGCAACCAAAATAATATTAAATCAGATTAAATCATTCATCCTTGTTCAAATGCAACTTTTTCTGCTGCCTCAGAATCAACAAAGCTATCCACTCAATATATAAGATTAATCATTGTGTACGCAATGTGGCAAATCCTATAAATGCCGGTCAATAGACAATAAATTTGAAAAGGAAATAAAAAGTTCATTCACGGACACATAAGACATGATTATACTGCTAACTTACTATATTTAATAGCAATCATGATGTACTGCCCCTCCCTTTGGGGGGGGGGGGGGGG | |||||||||
gi|188226167|gb|EY655921.1|EY655921 CS00-C1-100-113-H02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ TGCATTTGCACCTGCACCTTG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGATTTTGCAAATTTCTCTTCTGTTGCTTTACCATATTGTCTTTTCAGGATTGACTAGGAGTGCCTCATGCTGAAGATGAATGTAGAGAATGAGAACATAGAGCCAGTGACTGATTTGGGACTTGCACTAGGTTATTCTAGCCAATGCGTTCAGAGGAGATTGAACAGTGATTCATGTGCATGTGCAAATGCAGGCTTCAGGATAGACATNGAATTTNGTGGNCACTATCCCCCTGTCTGAACTAGATTGGGTCTCACGGGATGGTCTGAGTCTAAAATGTGCTGATTCTAGCTTTTGCCACAAAAATCATATCTTATTTTGGNTGCGAGACCGAGCAATGTGGTTCCTTTACCCTCTCAAAAAGTTTTCCCTGGGAGGGCTAACAATGACCAACCCTAAATTTAGAAAAAATTCTAATGGGACCAGAACGCCTTTATCTGAACAAAGAAACTGCTGGGAAGAAAAATTTCGGGCCGGAACACTTGAAATTAAGTTGCCGCCTGTCCCCCAGGGGGGCCGGGCTTTAGAAAAACAGGGGTGGTCCTTTCTTTGGAAAAACAAAAGGGGGATTGGGGGACTTGGGCACTTATTGGGGACGCAAATTTTAAATTTTTAAAGATGTTTTTCTCGTGCCCAAACAAAAACAGGGCCGGAATTCCCAACCCGGGAAAGTTTCTCTCAAATTTCCCTGTGTCTAACCCTGATTTCCCTAATGAACTCTTCTGGGGATCTACTGGTGTGGCAAGATATGCTAGTGGATCAACATCAGATGGAAATGTTTTGCCTCAAGTCACACACAAGATCTGAGCAATGACCTTTNTGCGGACTGAATCCCACGNAAGACACA | |||||||||