| mature miRNA: TGCCAAAGGAAATTTGCCCCG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|31384260|gb|CD462992.1|CD462992 ETH1_41_E03.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_41_E03_A002 5' TGCCAAAGGAAATTTGCCCCG EST sequence (targeted fragment marked with yellow): AAATCTAGACCTAGCTTTCCAAGAGAGAAAATTATTAGGGCACTTAATCTAAATGTGTTAGGAACAAACAAGGAGCGGAATACGCACTCAAATACGCAAAGAAAATTCAGTACTTGTCACCTGTATGGTTCGACTTCAGAGTCAAGGCAGTTTCAAAGAACTACTATGATTTTTATATTGAAGGGGATCATAATGTTGATCAGAGCTATATCAATGCACTCAAAAAGAAGAATCCAGATATCCAAATTTATCCACGAGTTTATATAGAGGCAAATATCTATGAGAGTCTCTATCATGTCTTCAATTCAAATGATCTTGATACAATTGCAGACAAATTTGTCGAGGCTTTTAAAAAATACGATAAAGAATTCGATGGTATTGTCTTTGATTCACCTCTGATTTCGCTTCTGACTCAAGTGCCATTCAACTTGATGGGATTTATGGAAAAAATTAACTTGAAACTTGGCATGATGGGAAAGAACTTGATTCTTTCACTACAAACAAATTACAAACTCAAGCCTGCTCAATTGGAAAAATTACTGTTAATAAGTCACAAGCTATTAGTGCAAACTTATGATTACTATTCATCAACACCGGGTGAATTTCCTTTGGCTCCTTATAACTGGGTGCAGAATAATATTCAAGCTTTTATTGACGAAA | |||||||||
gi|45979775|gb|CN142460.1|CN142460 WOUND1_10_D09.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_10_D09_A002 3', mRNA s TGCCAAAGGAAATTTGCCCCG EST sequence (targeted fragment marked with yellow): CGAGACAATGATTATTTCATCAGCTGGGGGGTCAACTCATGTATGTTGTACACAGCAAAGAATATATTTTGAGCTGTATAATCCAATATGAGAGATCGGATAAGTTTCCTTTGGCAGGCTCATCTTAAAATTTGATCAAAAATTGGCCACCGGGGGTGGCGTCAAAATAGCGCAAAAGAACCACTGCACTTCAAAAACCTGTTGTGGGCGTGTACTGCGTGCTCAACTCATTTGTTCTCCTCGATAAACTCCCGATATTCTTTCTTCCTTTTCACACCAAATACAGTCCTAAGCATTTCTTTGTTCTTAAAAAATTGAACACAAGGTGTTCCCATGATGCCTGCAGCTTCTGCTATTTCAGGATCCTCCTCAATGTCAATTTCAACAAGATGAACAAACTCATCGTACTCATCTATGACCTTGTTCAAAATTGGCTTTAAGGTTCTACAAGGACCACATGTGGGAGAAGTGTATAGAACACAAATGAGTCGTGGACTCTCATGGTATAGTTTGCGGAGTGCATACTGTCCCTTGTGTTTTCTATGAGAAATGTCAAAGCCCATTTCAACATCTTTATCTGTAATATCCTTCTTTGTTTCTTCTTGAACAGGCTGGTGAAATTCAACAA | |||||||||
gi|45969610|gb|CN136613.1|CN136613 OX1_44_F11.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_44_F1 TGCCAAAGGAAATTTGCCCCG EST sequence (targeted fragment marked with yellow): AAGAAGCTGCTATTTTGTTTGTGGAAATCAAAATGTGCAGGAATCTGGCTACTGTAAAACAAGGAATTTACGAGATGGTATGAAGCAGCAGAAGTTACGAGACCAACATAACAAAATAAGCTAATATCTGACTACTGTAGGCTTACACGACAACGCAGTCTGGCTCTGTTAAGCAAGCGAGGAAATGTATCAGGGACCAACGATCGTTGGGTGGTGTTGTGCCAGCGCTGTCTTCAGGGCTCCGCGTCTTCCTCGTCGGCGGCCGAGGTGGTATGCGCCGGGTACCTCCACATGATGTCTGCCCAGGTGCTCTGCCCGTCCGTCACTTCCTTCACCACCGAGGCCACCTCGTCCACCTCAACGCGGATCTGGTCCTTGCTGTCGCGATCGCGCACCGTCACGCTTATAGTGTTATCGACTGTGATCGCCAGGGGAACACCAATCTCGTCCGTCCTTGCATACCGTTTTCCTATTGTATTACCTGTCATGTCGATAATATGTGAAATCCCTGCTGCTGTCAAGGCCTTTGAAATTTTCTTGGCAACAACCTCAAATTTCTCAAGCTTGACCAATGGAAAGACAGTGCACTTTATTGGAGCAACAAGAGGGGGAAAACGGAATACGTTTAACTGCTCATCCTCTGTCTTGCCAGCCCTTTGGTAGAAGCAGTGCTCAAAAAGGCAATATATAATGCGCCCAATCCCAAAGGATGGTTCTATGACGGAAGGAGTAAATTTCCTTTGGTGTTCCTTTTTCTTCTCGATGTTAATTGAAACCATGTTTTTCTTTATGGTAACATCCTTCCCAAGCGTACACACCTTGAACTC | |||||||||