| mature miRNA: TGCCAAAGGAGAATTGCCCT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164373532|gb|DB934725.1|DB934725 DB934725 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_I0 TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): AATGAACTATCTGCCGATTGTGCACATATTCCAAAAATGAAGGCACATCTGGGTATCGGCAATCTTCTTCACCCGCAAGAGGAGTTTTCTGAAAGCAAATTATGTCTCCATCTTCAAGCTGACTTAATCGAAATGAGGTCCTTTTATCAAGATGTTCACACATGACACAAGGCTCAAACTTTATTTCCTCATAAAGTTCAATCTCTTCATCAGATGCAATAACAGCCATTTGTTTAAGCTTTGCCAAGATTTCCATTGGTTTTCCAGAACCCTTCACAAAAAGCCTACCAACATATCGTAATTCTCCTTTGGCAGGATCATAAAGCTTGAAGAAAAGAAGAATATCTTCTTTAGTTTTTTCAGGAGGAGCAATAGGACGTAAATCCAGTCCAAACTCTACTTCCAAGAACAACTTCAATTCTGCATTGTGTGCTTTATTTGAAACTTCCCTCAGCTGTCCAACTGATTGCGCTTCCTCATGAGCAGTTAGTGGTCGATTGGGACGATATGTATGATTTTGACGCTTTGCCCATATCCAAAATCGCTGAAGTTGTACTGGTACACCAAATTCTTTGGCAACCTCTTCCTTAAAATGACTAAATGATGTCTGCTTCTGGA | |||||||||
gi|56918768|gb|CK643105.1|CK643105 rni.05.F8.5 MBra685 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTAGAGCAATTATTAGGATGAGGAAAATCAATTACTTTGCAATTGATGTCTGTGCTCCTTATTGTCATCCTAATCTGAAATTTCTACACCTCCATAAATATACAAATGTTATAGAAAAAGATAAAAAAAACTGAACCGATCTTTGAGTCTTGACCTTCACTTCACATGATGAGAGCTGCATACAGGAGTTGATTCCAAGTATCAGGCAATCCAGGAAGGCACCAGTGGCTGCAGTCTGTTCCAGAGCCTTCACCACTATAAGTGGAAGGATGGGCATCTTTTCTTAATTGTGAGAGTGTTGTTATGTCTAGTAGATAAACAGGCTTCTTAATTGAACTTAACACCTTGTTCAACACTGCAGCAGCTGGAGGAGCACCACCTGGATAACTAGAACCTGACAGTGGCTCTGCTTCTCCATAGCAATTCTTCTTTGGCTGCTTCCAATCCCTGCCCTCATAATGGGTTGGAGAAATCCCTTGGAAGAAGACTTTGGTTTTGGAAGCATCAACATTAAGATAAACCCATTTTGCCCATGTTGACATCCCTCTATAAAATGCCTCTAAACGATTCATGTCCTTGTACATTTTTGATCCATCA | |||||||||
gi|164394469|gb|DB945966.1|DB945966 DB945966 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_D1 TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): GGCGTTGGAGTTTGTTGTGATTTTGGTATGCTGCTACTGGGAGACGAAGAGAACTGATAGCGGCCAAAGGGTTAGTAATCCTCTCTCTTCCTAGATGATTGTTCATTTCATTGATAAAATTGCATCGACTCCTCAATACTGCCCTTCAAATTCAACTTCAACTTTTGGGCATATAAGAATCTAGAAATTGCAAAAACCATTTCATTAGAGTTTACTAAAACTTCCATGTAGCTAGGGTTTCCCTAATTAAATATTCCAGCTGTATCTATGATCTGCCTGCGAGTAAGATATCCTGGAAATGTGTCTGCTTCAAGTTGCCTCTTCAACCAGAACCATCAGTGCCTTGGGCAGTTGAACATGGCATGCATTTACGAGACAATTGTGTAATTAGTAGTGTAGTTGAATAACAGGGCAATTCTCCTTTGGCAGCTATCAGTTTAGCAGACTGGTTAACAGCAGAATACCAAATTCCTGCCAAAGGAGAATCGCACTGATATTCTTCACTACCCTCTAGGAGTA | |||||||||
gi|164387666|gb|DB931899.1|DB931899 DB931899 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_033_M1 TGCCAAAGGAGAA-TTGCCCT EST sequence (targeted fragment marked with yellow): GGACTTCAATTCCTCCCTACAATCCCAGGAATTGAATTTCCCAAAAACTTTGGTTTATTTCATAATCACTTGCTTTCTGTCTCTTTTTATTAATTTCCCTCATTTTCTTTCCAATTTTTATGAATTCCGTGGATTTGAGATTTCCATAGTTCAATATTTTCTAAAGGGTATACTGTGAAGTTGAATTCCTGGGAAGTATTGTACAGGCACGTTGTAGATCCTCTGTTTCTGCTACTTCGCTTGTCTTTGATGTTGTCGTTAATTGGAAAAAGAATTGAGAAAAATTTAGCGTATCTTTAGGAGATTCTCAGCTAAATTGTTTATACCTAATTCTCTAATTCCCACAAAAACAAGACACAGATTGATTAACACTTCACGTTTGTGTCGCGTATGTATAGAGATTAGGGTAATTTCTCCTTTGGGAATTTTAATATCTTATCGTATTGCCTAGAAGATGGGGCAAAAAGGTTGTTTGCGTTGTTAAGTTGGTGTTATCTGATAGATAGATTGTTGTTTTT | |||||||||
gi|164378819|gb|DB935414.1|DB935414 DB935414 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_043_F2 TGCCAAAGGAGAA-TTGCCCT EST sequence (targeted fragment marked with yellow): GAGATACCTCTGTCTCTTTCTCTCCACATTTCTTCTACCATCTACTCATTTTTCATGCTTCGCTAGCGATTTTCAATAGTCTTATCTCTTTATCTTTTTGTCTTTCACGCTTCCCAACTCGCCTTCAATTCCTCCCTACAATCCCAGGAATTGAATTTCCCAAAAACTTTGGTTTATTTCATAATCACTTGCTTTCTGTCTCTTTTTATTAATTTCCCTCATTTTCTTTCCAATTTTTATGAATTCCGTGGATTTGAGATTTCCATAGTTCAATATTTTCTAAAGGGTATACTGTGAAGTTGAATTCCTGGGAAGTATTGTACAGGCACGTTGTAGATCCTCTGTTTCTGCTACTTCGCTTGTCTTTGATGTTGTCGTTAATTGGAAAAAGAATTGAGAAAAATTTAGCGTATCTTTAGGAGATTCTCAGCTAAATTGTTTATACCTAATTCTCTAATTCCCACAAAAACAAGACACAGATTGATTAACACTTCACGTTTGTGTCGCGTATGTATAGAGATTAGGGTAATTTCTCCTTTGGGAATTTTAATATCTTGTCGTATTGCCTAGA | |||||||||
gi|164373568|gb|DB934761.1|DB934761 DB934761 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_J1 TGCCAAAGGAGAA-TTGCCCT EST sequence (targeted fragment marked with yellow): GGTCCCTTTCTCTCCACATTTCTTCTACCATCTACTCATTTTTCATGCTTCGCTAGCGATTTTCAATAGTCTTATCTCTTTATCTTTTTGTCTTTCACGCTTCCCAACTCGCCTTCAATTCCTCCCTACAATCCCAGGAATTGAATTTCCCAAAAACTTTGGTTTATTTCATAATCACTTGCTTTCTGTCTCTTTTTATTAATTTCCCTCATTTTCTTTCCAATTTTTATGAATTCCGTGGATTTGAGATTTCCATAGTTCAATATTTTCTAAAGGGTATACTGTGAAGTTGAATTCCTGGGAAGTATTGTACAGGCACGTTGTAGATCCTCTGTTTCTGCTACTTCGCTTGTCTTTGATGTTGTCGTTAATTGGAAAAAGAATTGAGAAAAATTTAGCGTATCTTTAGGAGATTCTCAGCTAAATTGTTTATACCTAATTCTCTAATTCCCACAAAAACAAGACACAGATTGATTAACACTTCACGTTTGTGTCGCGTATGTATAGAGATTAGGGTAATTTCTCCTTTGGGAATTTTAATATCTTGTCGTATTGCCTAGAAGATGGGGCAAAAAGGTTGTTTGCGTTGTTAAGTTGGTGTTATCTGATAGATAGATTGTTGTTTTTC | |||||||||
gi|56918989|gb|CK643326.1|CK643326 rni.06.J4.5 MBra685 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): CACAACCACAGGAAGATACAAGAGAGAAGAAAAACAGGAAAAGAGCTTGTGAATTGAGCTAGCTAGATAGCCATGGCTAAGGAATTACAGGTTCTTAATGCGCTTGACGTAGCGAAAACACAATGGTACCACTTCACTGCAATTATCATTGCAGGAATGGGCTTTTTCACAGATGCATATGACCTCTTTTGCATATCTCTTGTGACCAAACTTCTCGGTCGCATATACTACCATGTTGATGGTGCAGAGAAGCCTGGAACTTTACCTCCTAACGTATCAGCCGCTGTTAATGGTGTAGCATTTTGTGGAACTCTGGCAGGGCAGCTCTTCTTTGGTTGGCTCGGGGACAAGATGGGGCGGAAGAGAGTCTATGGCATGACACTCATGCTCATGGTGATATGCTCGGTCGCCTCAGGTGTTTCTTTTGGTCACAATGCTAAAGCTGTGATATCAACCCTTTGCTTCTTCCGGTTTTGGCTCGGGTTTGGCATTGGTGGTGACTACCCACTTTCTGCCACAATCATGTCTGAATATGCTAACAAAAAGACTCGAGGAGCCTTCATTGCTGCTGTATTTGCCATGCAGGGCTTTGGAATTTTGGCAGGCGGCTTATTTGCCATAATTATATCATCTGCATTTCGTACCAGGTTTGATGCTCCAGCTTATGAGGTTGATGCAGTTGCCTCTACCGTGCCGCAGGCCGACTACGTTTGG | |||||||||
gi|164395169|gb|DB946138.1|DB946138 DB946138 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_M2 TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): TCAAAATCATCTCATTAATTATTATTTCCTTTTTGAGCCTCGAAATTCAGAACTTTTATATTGTGTACGGAACTTCAACGGCCTTTGTAGCATGCAATAATTTGCCCTTCGTTGAAACCCATTAACATTTTTACTCAAATATTTCAGGATTATGCAATGGGATTGGGTTTAGCTTATCAATGTAATAAGATGCACACGTGTGATCAATATATATACACATGCATGAAAAAGAAATCATTCAACTAGAACTTACTAACACTATCATAGAATTCCAAGAGAAGCTGAAAATAAAGGCATTGCTTGAGAGAGAATTGTATGGACTGAATTGTGGGGCAAATCTTCTTTGGTAGTAGGCCTACTCTTTGTAGTTGATTACAACATGAGTTGCCAACTGCCAAAGCAAGAATTGCCCAGGAATGCATACCCATAAACATAAGGGTACGTACCCTTAAACTATGTACTGATGAAACAGTGCCCATAAACATAAGGGTGCGTACCCTTAAACTTTGTACTGATGAAACAGTTTCAAGGTTCAATAGTAATTTATAGTTCAGT | |||||||||
gi|164401761|gb|DB924911.1|DB924911 DB924911 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_014_H1 TGCCAAAGGAGAATTGCCCT EST sequence (targeted fragment marked with yellow): CGGGGGAAAATTAAGGAGATAAGAGGAAAATAATAAAAATCTTGATTACCCTTCTTATCCAAGAGAGAAAGGCCACATCTTCTTTGGCAATATCATATTCCTTTGCGAGTGGTTCATTAAGAGAAGAGAAGAGAAGACATGGCTATGAAGAACTGTTTTCAAGTGAGTACAGTGTGCACTGGTGCTAGAGCTGGAGTATTATTTGCTCCAGTAGAGAAGCTTCATTTACCAACTTCCTGTAGAGGATTTAATAATCAATCCAATTCTTCATCATTGTCTTCCTCCTCTTCTTCTTCTTCCTTTGCTCATTCACTCACTACTCTCAGAAGAAGAAGCCAAAAATCCCGCTTTGTCTGCAAAGCTCGGGAAGCTTTAGATGAAGGTTTGTCATTTAGCTCCTCCTTCACAGCTCCAGTTTAGTTTTTTTTCTTTTCTTTTCTTTTAATATTTATACATTATGTGATCTTTTCTATGCCTCATTTTCTAGTTGCTGCCATTGGAATGGTAGTTCTTGAG | |||||||||