| mature miRNA: TGCCAAAGGAGAATTGCCCTG species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56918768|gb|CK643105.1|CK643105 rni.05.F8.5 MBra685 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): TTTTTTTTAGAGCAATTATTAGGATGAGGAAAATCAATTACTTTGCAATTGATGTCTGTGCTCCTTATTGTCATCCTAATCTGAAATTTCTACACCTCCATAAATATACAAATGTTATAGAAAAAGATAAAAAAAACTGAACCGATCTTTGAGTCTTGACCTTCACTTCACATGATGAGAGCTGCATACAGGAGTTGATTCCAAGTATCAGGCAATCCAGGAAGGCACCAGTGGCTGCAGTCTGTTCCAGAGCCTTCACCACTATAAGTGGAAGGATGGGCATCTTTTCTTAATTGTGAGAGTGTTGTTATGTCTAGTAGATAAACAGGCTTCTTAATTGAACTTAACACCTTGTTCAACACTGCAGCAGCTGGAGGAGCACCACCTGGATAACTAGAACCTGACAGTGGCTCTGCTTCTCCATAGCAATTCTTCTTTGGCTGCTTCCAATCCCTGCCCTCATAATGGGTTGGAGAAATCCCTTGGAAGAAGACTTTGGTTTTGGAAGCATCAACATTAAGATAAACCCATTTTGCCCATGTTGACATCCCTCTATAAAATGCCTCTAAACGATTCATGTCCTTGTACATTTTTGATCCATCA | |||||||||
gi|164394469|gb|DB945966.1|DB945966 DB945966 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_D1 TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGCGTTGGAGTTTGTTGTGATTTTGGTATGCTGCTACTGGGAGACGAAGAGAACTGATAGCGGCCAAAGGGTTAGTAATCCTCTCTCTTCCTAGATGATTGTTCATTTCATTGATAAAATTGCATCGACTCCTCAATACTGCCCTTCAAATTCAACTTCAACTTTTGGGCATATAAGAATCTAGAAATTGCAAAAACCATTTCATTAGAGTTTACTAAAACTTCCATGTAGCTAGGGTTTCCCTAATTAAATATTCCAGCTGTATCTATGATCTGCCTGCGAGTAAGATATCCTGGAAATGTGTCTGCTTCAAGTTGCCTCTTCAACCAGAACCATCAGTGCCTTGGGCAGTTGAACATGGCATGCATTTACGAGACAATTGTGTAATTAGTAGTGTAGTTGAATAACAGGGCAATTCTCCTTTGGCAGCTATCAGTTTAGCAGACTGGTTAACAGCAGAATACCAAATTCCTGCCAAAGGAGAATCGCACTGATATTCTTCACTACCCTCTAGGAGTA | |||||||||
gi|164373532|gb|DB934725.1|DB934725 DB934725 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_041_I0 TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): AATGAACTATCTGCCGATTGTGCACATATTCCAAAAATGAAGGCACATCTGGGTATCGGCAATCTTCTTCACCCGCAAGAGGAGTTTTCTGAAAGCAAATTATGTCTCCATCTTCAAGCTGACTTAATCGAAATGAGGTCCTTTTATCAAGATGTTCACACATGACACAAGGCTCAAACTTTATTTCCTCATAAAGTTCAATCTCTTCATCAGATGCAATAACAGCCATTTGTTTAAGCTTTGCCAAGATTTCCATTGGTTTTCCAGAACCCTTCACAAAAAGCCTACCAACATATCGTAATTCTCCTTTGGCAGGATCATAAAGCTTGAAGAAAAGAAGAATATCTTCTTTAGTTTTTTCAGGAGGAGCAATAGGACGTAAATCCAGTCCAAACTCTACTTCCAAGAACAACTTCAATTCTGCATTGTGTGCTTTATTTGAAACTTCCCTCAGCTGTCCAACTGATTGCGCTTCCTCATGAGCAGTTAGTGGTCGATTGGGACGATATGTATGATTTTGACGCTTTGCCCATATCCAAAATCGCTGAAGTTGTACTGGTACACCAAATTCTTTGGCAACCTCTTCCTTAAAATGACTAAATGATGTCTGCTTCTGGA | |||||||||
gi|56918989|gb|CK643326.1|CK643326 rni.06.J4.5 MBra685 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): CACAACCACAGGAAGATACAAGAGAGAAGAAAAACAGGAAAAGAGCTTGTGAATTGAGCTAGCTAGATAGCCATGGCTAAGGAATTACAGGTTCTTAATGCGCTTGACGTAGCGAAAACACAATGGTACCACTTCACTGCAATTATCATTGCAGGAATGGGCTTTTTCACAGATGCATATGACCTCTTTTGCATATCTCTTGTGACCAAACTTCTCGGTCGCATATACTACCATGTTGATGGTGCAGAGAAGCCTGGAACTTTACCTCCTAACGTATCAGCCGCTGTTAATGGTGTAGCATTTTGTGGAACTCTGGCAGGGCAGCTCTTCTTTGGTTGGCTCGGGGACAAGATGGGGCGGAAGAGAGTCTATGGCATGACACTCATGCTCATGGTGATATGCTCGGTCGCCTCAGGTGTTTCTTTTGGTCACAATGCTAAAGCTGTGATATCAACCCTTTGCTTCTTCCGGTTTTGGCTCGGGTTTGGCATTGGTGGTGACTACCCACTTTCTGCCACAATCATGTCTGAATATGCTAACAAAAAGACTCGAGGAGCCTTCATTGCTGCTGTATTTGCCATGCAGGGCTTTGGAATTTTGGCAGGCGGCTTATTTGCCATAATTATATCATCTGCATTTCGTACCAGGTTTGATGCTCCAGCTTATGAGGTTGATGCAGTTGCCTCTACCGTGCCGCAGGCCGACTACGTTTGG | |||||||||
gi|164395169|gb|DB946138.1|DB946138 DB946138 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_M2 TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): TCAAAATCATCTCATTAATTATTATTTCCTTTTTGAGCCTCGAAATTCAGAACTTTTATATTGTGTACGGAACTTCAACGGCCTTTGTAGCATGCAATAATTTGCCCTTCGTTGAAACCCATTAACATTTTTACTCAAATATTTCAGGATTATGCAATGGGATTGGGTTTAGCTTATCAATGTAATAAGATGCACACGTGTGATCAATATATATACACATGCATGAAAAAGAAATCATTCAACTAGAACTTACTAACACTATCATAGAATTCCAAGAGAAGCTGAAAATAAAGGCATTGCTTGAGAGAGAATTGTATGGACTGAATTGTGGGGCAAATCTTCTTTGGTAGTAGGCCTACTCTTTGTAGTTGATTACAACATGAGTTGCCAACTGCCAAAGCAAGAATTGCCCAGGAATGCATACCCATAAACATAAGGGTACGTACCCTTAAACTATGTACTGATGAAACAGTGCCCATAAACATAAGGGTGCGTACCCTTAAACTTTGTACTGATGAAACAGTTTCAAGGTTCAATAGTAATTTATAGTTCAGT | |||||||||