| mature miRNA: TGCCAAAGGAGAATTGCCCTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9852079|gb|BE597006.1|BE597006 PI1_60_B12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GCACGAGGTGGCGGCGGGTTGGAACTGCGACAGGGTCAGCTGATCTTGCCGGATAGACCACTCTATTGTGTTATCTCATTATAAGTGAAGCCCCCACTGATGAAAAGCTGTTATCTTGGTTGCTTTCTTGAGGAGTACTGGTCACCAGATGGTAGCATGTTCTCTTCTGTGTGATTGGGCTTGATTATGGACTGATGCTCCTGATCACTCTTGTCCTGTGATCATCCAGAGTATATCATCTGTCAGCTAGTCTTTCCTCTATTGGAATCACCTCCCTTTATGAAAGAATCCTTGTTATAGGGCAAATCTCCTTTGGCAAACATTGTTCAGGGTGCATCACTTTGTTGGATATCCTGAGCATATTCTCCTCGTCGATTGAACAGCAGCAAAGAGACTTCCAAATGATATCCGTTAGGAAATTCTCATTTAGTTTGATGGAAGTTTCATAAGGTTTCTTATCATCTGATTTGCTGGGCAAATCTCCTTTGGCAGTACTTATTAATAGCTCTTTTGGGCAAATCTCCTTTGGCATTAGCTGCTTCAGATATCTCTCTGGGCAAATCTCCTTTGGCATTAGTTTCTAGCTGTTTCATATTGCTCTTCGGGCAAATCTCCTTTGGCACTAAATACCATTTATATTTACTATTTTTGGTAAATCT | |||||||||
gi|9852079|gb|BE597006.1|BE597006 PI1_60_B12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GCACGAGGTGGCGGCGGGTTGGAACTGCGACAGGGTCAGCTGATCTTGCCGGATAGACCACTCTATTGTGTTATCTCATTATAAGTGAAGCCCCCACTGATGAAAAGCTGTTATCTTGGTTGCTTTCTTGAGGAGTACTGGTCACCAGATGGTAGCATGTTCTCTTCTGTGTGATTGGGCTTGATTATGGACTGATGCTCCTGATCACTCTTGTCCTGTGATCATCCAGAGTATATCATCTGTCAGCTAGTCTTTCCTCTATTGGAATCACCTCCCTTTATGAAAGAATCCTTGTTATAGGGCAAATCTCCTTTGGCAAACATTGTTCAGGGTGCATCACTTTGTTGGATATCCTGAGCATATTCTCCTCGTCGATTGAACAGCAGCAAAGAGACTTCCAAATGATATCCGTTAGGAAATTCTCATTTAGTTTGATGGAAGTTTCATAAGGTTTCTTATCATCTGATTTGCTGGGCAAATCTCCTTTGGCAGTACTTATTAATAGCTCTTTTGGGCAAATCTCCTTTGGCATTAGCTGCTTCAGATATCTCTCTGGGCAAATCTCCTTTGGCATTAGTTTCTAGCTGTTTCATATTGCTCTTCGGGCAAATCTCCTTTGGCACTAAATACCATTTATATTTACTATTTTTGGTAAATCT | |||||||||
gi|33110997|gb|CF074338.1|CF074338 FE1_23_B01.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_23_B01_A002 5', mR TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTGTTTTTAGATGGAATAGCAATTGAATATTAGGATTTTCATAAAAGCGCAAGTGTACGAACCCAAACAGGCACACATGCATTGGACAAAGCACACATAAGCAATACATTCTACCAACAATGATAACCGTGTTACTAAAATATTACAAATGTGGATTGCTGGGCAAATCTCCTTTGGCAGAGCAAACCAGATCCAGCAAAGTAAAATTCAATTACTCTGCCCAAGGAAAAAGGGCCCGGTAATCCTCGACTCACATATGCTTGCACACGGGAGACGGCAGTGCACTACGGCACTCTGCTTATTTGGCTTCCCTGATGACTGCCTTGTTGCATCCCAAGTTAGATCAATGCAAAATTTATATGCATAGAACTGTTGCTAGATTTGACAGCATGGCATGGAAGCTGGTATCAACATATCCGCGTGATCTTCTCTT | |||||||||
gi|9852079|gb|BE597006.1|BE597006 PI1_60_B12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GCACGAGGTGGCGGCGGGTTGGAACTGCGACAGGGTCAGCTGATCTTGCCGGATAGACCACTCTATTGTGTTATCTCATTATAAGTGAAGCCCCCACTGATGAAAAGCTGTTATCTTGGTTGCTTTCTTGAGGAGTACTGGTCACCAGATGGTAGCATGTTCTCTTCTGTGTGATTGGGCTTGATTATGGACTGATGCTCCTGATCACTCTTGTCCTGTGATCATCCAGAGTATATCATCTGTCAGCTAGTCTTTCCTCTATTGGAATCACCTCCCTTTATGAAAGAATCCTTGTTATAGGGCAAATCTCCTTTGGCAAACATTGTTCAGGGTGCATCACTTTGTTGGATATCCTGAGCATATTCTCCTCGTCGATTGAACAGCAGCAAAGAGACTTCCAAATGATATCCGTTAGGAAATTCTCATTTAGTTTGATGGAAGTTTCATAAGGTTTCTTATCATCTGATTTGCTGGGCAAATCTCCTTTGGCAGTACTTATTAATAGCTCTTTTGGGCAAATCTCCTTTGGCATTAGCTGCTTCAGATATCTCTCTGGGCAAATCTCCTTTGGCATTAGTTTCTAGCTGTTTCATATTGCTCTTCGGGCAAATCTCCTTTGGCACTAAATACCATTTATATTTACTATTTTTGGTAAATCT | |||||||||
gi|9852079|gb|BE597006.1|BE597006 PI1_60_B12.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GCACGAGGTGGCGGCGGGTTGGAACTGCGACAGGGTCAGCTGATCTTGCCGGATAGACCACTCTATTGTGTTATCTCATTATAAGTGAAGCCCCCACTGATGAAAAGCTGTTATCTTGGTTGCTTTCTTGAGGAGTACTGGTCACCAGATGGTAGCATGTTCTCTTCTGTGTGATTGGGCTTGATTATGGACTGATGCTCCTGATCACTCTTGTCCTGTGATCATCCAGAGTATATCATCTGTCAGCTAGTCTTTCCTCTATTGGAATCACCTCCCTTTATGAAAGAATCCTTGTTATAGGGCAAATCTCCTTTGGCAAACATTGTTCAGGGTGCATCACTTTGTTGGATATCCTGAGCATATTCTCCTCGTCGATTGAACAGCAGCAAAGAGACTTCCAAATGATATCCGTTAGGAAATTCTCATTTAGTTTGATGGAAGTTTCATAAGGTTTCTTATCATCTGATTTGCTGGGCAAATCTCCTTTGGCAGTACTTATTAATAGCTCTTTTGGGCAAATCTCCTTTGGCATTAGCTGCTTCAGATATCTCTCTGGGCAAATCTCCTTTGGCATTAGTTTCTAGCTGTTTCATATTGCTCTTCGGGCAAATCTCCTTTGGCACTAAATACCATTTATATTTACTATTTTTGGTAAATCT | |||||||||