| mature miRNA: TGCCAAAGGAGAATTGCCCTG species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|215516980|gb|CU602562.1|CU602562 CU602562 SEEDMAI_KZ0AAG Theobroma cacao cDNA clone KZ0AAG3YD21FM1, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGGCAATGATACTTCATAGCAAGAACAAAATGTCCAGACTAAACTTAAACACGAGATGACTAGCTCCACAAAACACAAAAGTAGGCCAATGCAGGAAAAACATCTGAATAAAAAAAATCATTTCTGGGCAATCTCCTTTGGCACTGGATTCACCGGTAACCTTTCAGAGGGTCTGCTGTTTTGCCAGACCTTGCATCAGTCCATGCTTTGGCAATTGTTCTCTTCATGTCATCATCACCGTCCTCATACATATTCTTCATTAAGTCCATGATTCCAGCCATGGGATCTCGTTCTTTATCCAAATTTGGCTTCCGCTTGTCCTCCTTGTAGTGCAGATCAGACCAGTTCCCTTTGGAAGCTTTGAACAATGTGATGACGACTCTTGTAGGCTTGACTAACGCCTTGCACTTTTCTGGTACAATGTCTTTATTCAATTTCGGAATGGCACATCGATAGTTCTTTCCTTGGACGTCATGAAATTTAACATCAAATGACATTGGCTTGAACTCTGTCTGAATTTTTTCCTGGTTAACTCCTTCTAGAGAGACATATATCTTGACTTTATCATTATCCTGATCCCAGCTGAACGAGGCGAGCGTTACATAACTCAATGCTGGGTTAACAGGAACCTTACCTGAAGTTGATATGGGAGTTGGAATTTGTGAAACAGT | |||||||||
gi|212318415|gb|CU533496.1|CU533496 CU533496 TEGPULI_KZ0AAI_K Theobroma cacao cDNA clone KZ0AAK9YB11FM1, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): CGGGGGTACAAGGCTGTTCTCCTGTGGCACCAGTAAAGAAGGGGACTCATTCATCGTAGAATGGAATGAAAGTGAAGGGGCTGTGAAGAGGACATATCAAGGATTCCGGAAGCGTTCTTTGGGTGTTGTGCAATTTGACACAACTAAGAATAGGTATTTGGCGGCTGGTGATGATTTCTCTATCAAATTCTGGGATATGGATAATATTTCACTGTTGACCAGTATTGATGCCGATGGAGGTCTTCCAGCTAGCCCACGCATCCGCTTTAATAAGGATGGCTCTCTTTTGGCTGTTTCTACCAATGATAATGGGATTAAGATTTTGGCGAACTCAGATGGTATGCGATTATTGCGCACTATGGAAAACCTTTCTTATGATGCATCAAGAGCATCTGAAGCCCCAAAGCCTACTATAAATTCAATCTCCGCCGCTGCAGCAGCAGCGGCAGCAGTAGCTGCTACTAGTGCTGGAATTGTAGACAGAAGTGCCTCTGTGGTTGCAATTGCCGCAATGAATGGGGATGCCCGGAGTTTGGGGGATGTGAAACCCAGAATAACGGAAGAATCCAGTGATAAATCAAAGATTTGGAAGCTCACTGAAATCAGTGAACCATCTCAGTGTCGATCTTTGAGGCTTCCTGAAAACTTGAGGGTAACCAAGATATCAAGGTTAATCTTCACAAATTCAGGTAATACTATTTTGGCATTAGCATCAAATGCTATTCACTTGCTT | |||||||||
gi|212103507|gb|CU541904.1|CU541904 CU541904 CORTINS_KZ0AAV Theobroma cacao cDNA clone KZ0AAV6YO17FM1, mRNA sequence TGCCAAAGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTGTGTATAGTTGTAAAATTGCTTCCACCAAAGTCATGGTTTTACCAGTGCCAGGGGGGCCATAAATCACATACGGAGGAACTCCTTTGCAAGCAAGTATCATCTCAACAAAATGCATCTGCTCCACATTCAGAGTACAGCTACAAGGTACAAATGGGGCTGTTTTAACCAATGTCCTTTTGGTTGATTGAAATGGAAAGAAAATATTGTCCTGTAAAGTCTCTGCTGCTTCAACAGCCTGATACAACCTCCTCATGTTCACCCTGTTATATGTAAATTGAACATTGTATAAATTCCCATCCCAGTGAAGGGTGTGAAATTTGTCTGCAAATTTCAAGAGGACTTCATCAGCCTCAACGCGATAAATGTAGCCCTGATATACAGAATGATCTGAATTGTCAGAAGCAATCTTCGCAAATACAAAATCGCCATGTACAAGTGAAGGCCTCCTCTCAGCTAGCCCAGGCACCTCAAGAACAACAAACTGCGGCCCTTTCCTCCTCATCATGACACATTCCATGCTATGAAACCTCATTTCTTCCTCTAAATGCAGCTCTTCCATTACGAACAATGTACTGAAGAAAGCAGCATAATTCTCCTTTGTCAAACCTTCTGCAATGACAT | |||||||||