| mature miRNA: TGCCAAAGGAGAGTTGCCC species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83981808|gb|DW127917.1|DW127917 CLSX4445.b1_I08.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX4445, mRNA sequence TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): CGGGGAAGCGAACTAATTGCAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAACGCTATTTGCCAAAGGAGAGTTGCCCTGTATCTGGTTTGCTTAATCGAGTCAAGAAAATGAATGAAGGTGTGGATAAGTTCATAAAGGGAAAACCAAGCATACTATATAGAACATGGTACGCATTGTGGTGTGGCAACTCATGCACGATCAACAGATAAATATTGTCTCTAAAACCAGAATCATAACAATGTGGCAAAACAATTGCCACATTGTTTTTTTGGAGCCACAACCTAATTGTTGAATGCGTTAGCACGTCTTACTTATTCAAATAGTGGAATCTTTCTTAAGAGAATCATAAATTGTAACTTCGAACTTTAGGGTTGGATTTTAATTTGAGTTTGACATATATAATTTTTAGTTTGTACAAAACTACGTGTGTGATTTTGTCTATATGATGCACACATTATCATTGTTTTGAACTTTTTGATTATATCAATTTGTCTAAGACGAGAGACAACCA | |||||||||
gi|90501100|gb|DY962958.1|DY962958 CLSM1323.b1_F19.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM1323, mRNA sequence TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): TGTATCTCTCTCCGAGATTTGTGCTCCCCGTGAATCTGCTTATTACAGATATGTCAAAACCCTCATCCTCTAAAGCAATTCTCCTTAGGCATCTTCATCATCGACATTCATAGGCCTTGTCGCTACCCAAACCCCCAATTTCATCGACCCCCATTTCCCATATCATCTCTCGGAACCCTAAACTAAACCCATGGATTCCATCATGTCGCTTACCCAGCTTATTGCCCTCTTCAGATTCGAAAATTTCCCAAAATCCATCTCATAAACTATCCGTGGAAACCAATTTGACCAGGAATTTCCTTGGGTTCAGGTACATCTCCACTGGGAGTTCGAATCCGGGTGGTAAATTCCATATGAATTTGTTGAAGAGTAAGATTAAAGAACCCGGTGCAGCAGTTAAGAATGCGTTTTCGAGGTATAAGCAAGCTGTTGGGTTGCAGATGAAGGCGTTTTGGAGGAGGAACAACATGGTTTTGTGGGGTGCTGGTGGGGTTTTGGTGTGTATTCTGCTATGGAGGATTATGTTTGGGATCGCCAATACTTTTATTGGGTTATCCGAGGGTATGGCCAAGTATGGTTTTCTTGCTCTTTCCTCAGCTATCGTCGCATTTACTGGGCTGTATCTGCGATCAATACTCACTACTAATTCCTGACAAAGTTTATAGAATGGCAATGAGAAAACTGAACACATCATCTGACATTCTTGAGATCATGGGTGCTCCACTCACTGGAACCGATCTCAC | |||||||||
gi|90505185|gb|DY967043.1|DY967043 CLSM18177.b1_B09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18177, mRNA sequen TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): GGGATAGGCTTCATTTGGCCCATAAATGCCGCAAACGTTCAACTCTTCTTTGGTGTAGTTTTATCTTTCTTCAAATGAAGGTTTCCAACAAGACTTCTTGCATGGTTCGACCAGCCGAGCCAACATGGTCCGGTAAGCTGGCCTTATCAGAACTTGACCAAACTGGTGTCACCACTCATGTCCCGACCATTTACTTCTACGCACAATCCCCTGAAGATTGGGTCACTGTTATACAAACCCTAAAAACATCACTGAGTTGTACCCTAGTTCATTTCTACCCGCTGGCCGGCCGGCTATCTGCTATTGCGGGAGGCCGTTTGGAACTTAATTGTAATGCTGCGGGTGCGCAGTTCACAGAAGCGTACACTGACAAGAAACTTATTGATCTGGATAGTCTTTTACCATCTCCGATATACCACCAACTTATTCCTTCAATAGATTACCAAAGTTCACTTCTTGAAGAAATCCCATTGTTAGTTTTGCAAGTCACAAGGTTCGTTTGTGGAGGGTTTAGCCTTGGTGTAAACATATCGCATGTTGTTGCTGACGGGCAAAGTGCACTTCATTTTGTGTCTGAATGGGCTAGAATTTCGAGAGGTGAGTTACTGGAGTCGCCACCTTATCTCGACAGAAAACTTCTGCGAGCTGGGGAACCTCCAAGGGCGATCTCAAGATCTGAACATGCAGAGTTCGATCCTCCACCGATCCTTATAGATCAATCTGGTAACGAAAAGGAATCTGAGAAGGAGACTGCAGTCACAATGCTGAAATTAACAGCAACCCAAGTAGAAAAATTGCGAAGGAAAGCTGATAATGGTCAGAAGAGTGACACAAGCCGTGGTTTTACACGGTATGAGACTGTAACTGCACATATATGGAGAACTGCATGCAAAGCGCGTAATCATAAACCAGAGCAGCCAACTGCATTGGCTATTTGCATTGATGTTAGAAGTAAAATGA | |||||||||
gi|90504780|gb|DY966638.1|DY966638 CLSM17795.b1_F09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM17795, mRNA sequen TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): GGCTTCTTTGGCCCATAAATGCCGCAAACGTTCAACTCTTCTTTGGTGTAGTTTTATCTTTCTTCAAAATGAAGGTTTCCAACAAGACTTCTTGCATGGTTCGACCAGCCGAGCCAACATGGTCCGGTAAGCTGGCCTTATCAGAACTTGACCAAACTGGTGTCACCACTCATGTCCCGACCATTTACTTCTACGCACAATCCCCTGAAGATTGGGTCACTGTTATACAAACCCTAAAAACATCACTGAGTTGTACCCTAGTTCATTTCTACCCGCTGGCCGGCCGGCTATCTGCTATTGCGGGAGGCCGTTTGGAACTTAATTGTAATGCTGCGGGTGCGCAGTTCACAGAAGCGTACACTGACAAGAAACTTATTGATCTGGATAGTCTTTTACCATCTCCGATATACCACCAACTTATTCCTTCAATAGATTACCAAAGTTCACTTCTCGAAGAAATCCCATTGTTAGTTTTGCAAGTCACAAGGTTCGTTTGTGGAGGGTTTAGCCTTGGTGTAAACATATCGCATGTTGTTGCTGACGGGCAAAGTGCACTTCATTTTGTGTCTGAATGGGCTAGAATTTCGAGAGGTGAGTTACTGGAGTCGCCACCTTATCTCGACAGAAAACTTCTGCGAGCTGGGGAACCTCCAAGGGCGATCTCAAGATCTGAACATGCAGAGTTCGATCCTCCACCGATCCTTATAGATCAATCTGGTAACGAAAAGGAATCTGAGAAGGAGACTGCAGTCACAATGCTGAAATTAACAGCAACCCAAGTAGAAAAATTGCGAAGGAAAGCTGATAATGGTCAGAAGAGTGACACAAGCCGTGGTTTTACACGGTATGAGACTGTAACTGCACATATATGGAGAACTGCATGCAAAGCGCGTAATCATAAACCAGAGCAGCCAACTGCATTGGCTATTTGCATTGAT | |||||||||
gi|83995620|gb|DW141729.1|DW141729 CLSY9793.b1_A02.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY9793, mRNA sequence TGCCAAAGGAGAGTTGCCC EST sequence (targeted fragment marked with yellow): CGGGGGAGGAGCCACGTGATGTTTCTTGGCTACAAACGGTGCGGAAGCTAACGGATCATGGCTGCTTTAAAGTTTAAACCCGCAGTTAGCGAACTTTTCTCCTTTCAGGGAAATAAATAGATCATCTTCTCAAAATAGCCAAATTTCCTTCTCATAATCGATAATTATCTCTCTTAGTATATGGTGCCTCGTTTGCTTCTTTTTCTGTATTATCTTTTTTCGGTTGATTCATCTTCTTCGTAAACAAACTCTCCGGGCAAATCTCCTTTTGGCAATTTACATATCTGGCTTCTTTAGTTCCTTTCGGAGCCATTTATTTATATATATAAATATAAATTAATTAAATAGATAAACTCCTTCGGGCAAATCTCCTTTGGCAAATCCAGAATTCATTTCTGGTGAAAACTTTGATCCAATTTATTTGGGGCAAATCTCCTTTTGGCATATCGGGTGTCTCTTCCAGACCCCTCTTTATCGGGCAAATCTCCTTTGGCAATTATCTCCGGTTTCTTTGGAGATCCCATCACTCTCTATATCACAAGGATTGAAGTGATGGATGTGTTTCTAAGTGATTTCGATAGCTACAGTGAAAGCAGTAGCTCTGATGATCAAGAAGACGATGAGTTCATGTACAGTGGACAAGCAAGCTGTATCCTCTCAAATCTTCAAGAAACCATTGGAAAAATCGATGATTTCTTGTTGTTTGAAAGAAGATACGTTCATGGCGACATCGTTTGCTTGATGAAAGATCACTCACAAATGGGAAAAGTAACAAACTTTGAGATGCTTGTAGACTTGGAGAATCTTAACGAGAAGAAACTANAGACATCAACTCCAAAGAGCTTCAAAGAATCCCGTTCATCTCAATGGGCGATTTCGTAATTTTC | |||||||||