| mature miRNA: TGCCAAAGGAGATTTGCCCCG species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16321309|gb|BE195468.2|BE195468 HVSMEh0089M04f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vu TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): GAGGACCGACCGACCGACCGACCTAGGGTTCGCGCCTCCCCGCCGGTCGCCGCCCGCCGCCCGCCGATCCTCTCCCCGCCGAGGATCAGGGCCGGCCGCGCCCGCTCCCGTCGGTCGCCGCTCTGGATCCGCGCCCCTCGGCGCCGAGCTCCGCCCCCGCCCGCCCGGGCCGCTGAAAGATGATAAACCTTTTTAAGATCAAGGGGCAGAAGAAGGAAGAGGCAGCCAACTCAAATGGGGGGCCGCCTGTTAAGAAGCAAAGTCCAGGGGAATTACGTCTCCATAAAGATATTGCTGAGCTTAACCTTCCAAAGACAACTAAGATTTCCTTCCCAAATGGAAAGGATGATCTCATGAACTTTGAAGCTACTCTACGGCCTGACGAAGGATACTATGTAGGTGGGTCATTCACTTTCACCTTCCAAGTATCTCCTTCATACCCTCACGAGGCTCCAAAGGTCAAGTGCAAGACTAAGGTTTACCATCCCAATATTGACCTAGAAAGAAATGTCTGACTAGACATTCTGAGTGAATACTGGGAGCCCGGGCTGGAATATAACACCGTATACTGTGGGGTAAACCTTCTTTGGTACAGGCGAGTGGCGAGGACCCCTTGGATCATGAAGCTGGGGCCGGTCTCCGGGACAACCCGAGGGATTGTCGTGAGAACGGACAGAAGGTGTGGGTTGAGAGCTTTGGAGAACACGCNTATTCAGGGACGTATAGATGAGCTGTCGGTCGTAGCCGCCAGTGAGGAAGGGGAGGACCTAGCGATCCTAGTTGGTTGACCCCCGTCCTCCTAATGACAGATGGCCGAGAGAAAGGGAGAGGAGAGAGAAAGGACGGGGATAGGGAGGGATAGGTGGTAAAATAGATGGGTTGGCGGTAGGTGTTGAATGTGTGTGTGAGCGGCGTGGGGAGGGCGG | |||||||||
gi|91114769|gb|BY875981.1|BY875981 BY875981 Germination shoots Hordeum vulgare subsp. vulgare cDNA clone bastl27d04 3', mRNA seq TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): TTGGAACGCCTGTGCATGCAAGGTGATTAGCTTGTTCACCAACTTAAGAAGGATCCTTCCGAAATCCTCGTCACTACACCATGGATGAACCTCAGCTTTGATAAGCTGGGGATCGCTGCTGATGAGATTCCAGAGGGGGTAATTCTCCTTTGGCATGACATAGTCCCCTTCCCTTAGCTTAAGGGAGGGGCAGTAATCCCCCTTCCCGTCACCGATGTAGATGAAGTGCTTGTTCTTGGCACTGTCTGCCTCTTGAATCCTCTGGATTATCTTGCCCTGCACATGGCAAGTAAAATTTTAGTTCATGGGGTTTTCATTGTGCACACCACTTTTCATGAGTAATGCACCGAGGATTCAGCAC | |||||||||
gi|14527293|gb|AV835204.1|AV835204 AV835204 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): GGGGAGGCCTGCTCCCTCTTCTTCACTGACCGAGCGGCCATGGCGGCGGGCTGGGCTTGGCACAGGATCAGCTAATCTGAACAGTTGTTGGTTGAATATTGGTCATTGGGTGGTGGCATATTCTCTGATGACTTCTCATGTCTGGTGATCATCGAAAGCGAACACATTTCATTCGGACTTTCCTCTGGAAATCATCTCCTGTGACAATCCATTCCTAGTTTTAGGGCAAATCTCCTTTGGCGCTGAACATTTCAGATAGTGACTGTTCTGTAGTTCTTCTGGAAGCTCCCTTAGCGAACATTTCAGACAGTGACTGTTCTGTAAGTTCTTCGGGGCAAATCTCCTTTGGCAAACCTACCGATAGTTCGGGGCAAATCTCCTTTTGGCAAAACCTACCTACAGTACCTATAGTTCGGCAAATCTCCTTTGGCAAATCTACCTAGTTCTTCTGATCTCCTTCCTTACATATGCTTTCTCTTCTGATTGCTCCCTGGACAAATCTCCTTCGACATTAGCTTTAGCTATCGATTGCTATCTTGGC | |||||||||
gi|14527293|gb|AV835204.1|AV835204 AV835204 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): GGGGAGGCCTGCTCCCTCTTCTTCACTGACCGAGCGGCCATGGCGGCGGGCTGGGCTTGGCACAGGATCAGCTAATCTGAACAGTTGTTGGTTGAATATTGGTCATTGGGTGGTGGCATATTCTCTGATGACTTCTCATGTCTGGTGATCATCGAAAGCGAACACATTTCATTCGGACTTTCCTCTGGAAATCATCTCCTGTGACAATCCATTCCTAGTTTTAGGGCAAATCTCCTTTGGCGCTGAACATTTCAGATAGTGACTGTTCTGTAGTTCTTCTGGAAGCTCCCTTAGCGAACATTTCAGACAGTGACTGTTCTGTAAGTTCTTCGGGGCAAATCTCCTTTGGCAAACCTACCGATAGTTCGGGGCAAATCTCCTTTTGGCAAAACCTACCTACAGTACCTATAGTTCGGCAAATCTCCTTTGGCAAATCTACCTAGTTCTTCTGATCTCCTTCCTTACATATGCTTTCTCTTCTGATTGCTCCCTGGACAAATCTCCTTCGACATTAGCTTTAGCTATCGATTGCTATCTTGGC | |||||||||
gi|14527293|gb|AV835204.1|AV835204 AV835204 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): GGGGAGGCCTGCTCCCTCTTCTTCACTGACCGAGCGGCCATGGCGGCGGGCTGGGCTTGGCACAGGATCAGCTAATCTGAACAGTTGTTGGTTGAATATTGGTCATTGGGTGGTGGCATATTCTCTGATGACTTCTCATGTCTGGTGATCATCGAAAGCGAACACATTTCATTCGGACTTTCCTCTGGAAATCATCTCCTGTGACAATCCATTCCTAGTTTTAGGGCAAATCTCCTTTGGCGCTGAACATTTCAGATAGTGACTGTTCTGTAGTTCTTCTGGAAGCTCCCTTAGCGAACATTTCAGACAGTGACTGTTCTGTAAGTTCTTCGGGGCAAATCTCCTTTGGCAAACCTACCGATAGTTCGGGGCAAATCTCCTTTTGGCAAAACCTACCTACAGTACCTATAGTTCGGCAAATCTCCTTTGGCAAATCTACCTAGTTCTTCTGATCTCCTTCCTTACATATGCTTTCTCTTCTGATTGCTCCCTGGACAAATCTCCTTCGACATTAGCTTTAGCTATCGATTGCTATCTTGGC | |||||||||
gi|161447579|gb|EX576252.1|EX576252 HDP10I12T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP10I12, mRNA sequence TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): CCTGAACTTGCCTGAAGAGTTACATAAGAGACACAATGTGCAGATAATCCCCCGACATACATAATCGGTGCAATGCAATTGTTATTACATCACGAATTAGGATGAATTCTGACCGAGGACAGTTCCTTAGCCGAGGCATGTGGAAATAGTCACGCAATATTGCCTGTACCGTGGGCTAAGATATGGTTACAAATCAATTTGGGACAGGGAGAGTCTGATGGTGACCTAGTTCCGTTGATACTGGATTGCTCATCTCGCATTTGTAGTCCAATTGGGACGCCTGTGCATGCAAGGTGATTAGCTTGTTCACCAACTTAAGAAGGATCCTTCCGAAATCCTCGCCACTACACCATGGATGAACCTCAGCTTTGATAAGCTGGGGATCGCTGCTGATGAGATTCCAGAGGGGGTAATTCTCCTCTGGCATGACATAGTCCCCTTCCC | |||||||||
gi|57824866|gb|CX626079.1|CX626079 GAN005E17u GAN Hordeum vulgare cDNA clone GAN005E17 3-PRIME, mRNA sequence TGCCAAAGGAGATTTGCCCCG EST sequence (targeted fragment marked with yellow): ACTTGCCTGAAGAGTTACATAAGAGACACAATGTGCAGAAAATCCACCGACATTCATACTCGGTGCAATGCAATTGTTATTACATCACGAATTAGGATGAATTCTGACCGAGGACAGTTCCTTAGCCGAGGCATGTGGAAATAGTCACGCAATATTGCCTGTACCGTGAGCTAAGATATGGTTACAAATCAATTTGGGACAGGGAGAGTCTGATGGTGACCTAGTTCCGTTGATACTGGATTGCTCATCTCGCATTTGTAGTCCAATTGGGACGCCTGTGCATGCAAGGTGATTAGCTTGTTCACCAACTTAAGAAGGATCCTTCCGAAATCCTCGCCACTACACCATGGATGAACCTCAGCTTTGATAAGCTGGGGATCGCTGCTGATGAGATTCCAGAGGGGGTAATTCTCCCTTGGCATGACATAGTCCCCTTCCCTTAGCTTAAGGGAGGGGCAGTAATCCCCCTTCCCGTCACCGATGTAGATGAAGTGCTTGTTCTTGGCACTGTCTGCCAGCGGCCGCTACTCAAGGGATTTGTTTAAGCCTGTCATTCGTGGCACTGAATATACATCCTGATGATGCAGACTGAGGTACTAGCTTATAAGATCAGAAGTTCAGAACAAGTGAAAATCAACAACCATTTCTGCCGCTATCTGTCAGGGCAAACTAGGAAGTAGAACTTTGTC | |||||||||