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mature miRNA: TGCCAAAGGAGATTTGCCCGG
species: Raphanus sativus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|158917244|gb|EX890146.1|EX890146 RS1CP47TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence 

TGCCAAAGGAGATTTGCCCGG
|||||||||||||||||| ..
ACGGTTTCCTCTAAACGGCTT

EST sequence (targeted fragment marked with yellow):
ATTTGTTTCGGCAAATCTCCTTTGGCATTTCAGAGTCCTTAGTTGGCTCACCTTTATCCCTCTAGGCGAGCAAATCTCCTTTGGCATTATCAGAGTCCATACCTGGCTCACGTTATCAGTTAGCGAGCAAATCTCCTTTGGCATTATCAGAGTCTTACACTCGACTCCTACTTAGTCACGGTCCGCATCTATCAAAGTAACTTCAGGGAAGGAAGAGACACCATTTAATCTAAGGCATCTAAACTATGGATATGAACCTTACTGACTCCGACTGGGAGAACTCCAGCGACAGTGGCAGCAGTGAACAAGAAGAAGTGGAGTTCTCTTACGGCGGACATGCTCAAGACATTTTCTCAAACCTCGAAGAGACCATTGGCAAAATCGACGATTTCTTGTCCTTCGAGAGGGGCTTCATGCACGGTGACATTGTGCGGTCCACAGCTGAGCCCTCAGGACAGAGTGGCAGGGTCATCAACGTGAACATGTTTGTCAACCTCGAGAGTATTCATGGGAAGGTCGTGAAGGAAGTTGATACCAAGAAGCTTCAGAGGCTGCGTTCTATCTCGCTCTGTGATTATGTGATCAACGGTCCTTGGCTAGGAAGGGTTGACAAGATAGTTGAGCGTGTCTCTGTCACCCTTGACGATGGGTCTAATTA


gi|166132940|gb|FD560927.1|FD560927 RS1EI45TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence 

TGCCAAAGGAGATTTGCCCGG
||||||||||||||||| ||
ACGGTTTCCTCTAAACGAGCG

EST sequence (targeted fragment marked with yellow):
GGAGTCCTTAGTTGGCTCACCTTTATCCCTCTAGGCGAGCAAATCTCCTTTGGCATTTCAGAGTCCATAGCTGGCTCACGTTATCAGTTAGCGAGCAAATCTCCTTTGGCATTATCAGAGTCTTACACTCGACTCCTACTATCTTAGTCACGGTCCGCATCTATCAAAGTAACTTCAGGGAAGGAAGAGACACCATTCAATCTAAGGCATCTAAACTATGGATATGAACCTTACTGACTCCGACTGGGAGAGCTCCAGCGACAGTGGCAGCAGTGAACAAGAAGAAGTGGAGTTCTCTTACGGCGGACGTGCTCAAGACATTTTCTCAAACCTCGAAGAGACCATTGGCAAAATCGACGATTTCTTGTCCTTCGAGAGGGGCTTCATGCACGGTGACATTGTGCGGTCCACAGCTGAGCCCTCGGGACAGAGCGGGAGGGTCATCAACGTGAACATGTTTGTCAACCTCGAGAGTATTCATGGGAAGGTCGTGAAGGAAGTTGATACCAAGAGGCTTCATAGGCTGCGTTCGATCTCTCTCTGTGATTATGTGATCAACGGTCCTTGGCTAGGAAGGGTTGACAAGATAGTTGAGCGTGTCTCTGTCACCCTTGACGATGGGTCTAATTATGAGGTCCTTGTAAGCGATCAAGATAAACTTGTGGCCATTCCTCCAAATCTGCT


gi|158917244|gb|EX890146.1|EX890146 RS1CP47TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence 

TGCCAAAGGAGATTTGCCCGG
||||||||||||||||| ||
ACGGTTTCCTCTAAACGAGCG

EST sequence (targeted fragment marked with yellow):
ATTTGTTTCGGCAAATCTCCTTTGGCATTTCAGAGTCCTTAGTTGGCTCACCTTTATCCCTCTAGGCGAGCAAATCTCCTTTGGCATTATCAGAGTCCATACCTGGCTCACGTTATCAGTTAGCGAGCAAATCTCCTTTGGCATTATCAGAGTCTTACACTCGACTCCTACTTAGTCACGGTCCGCATCTATCAAAGTAACTTCAGGGAAGGAAGAGACACCATTTAATCTAAGGCATCTAAACTATGGATATGAACCTTACTGACTCCGACTGGGAGAACTCCAGCGACAGTGGCAGCAGTGAACAAGAAGAAGTGGAGTTCTCTTACGGCGGACATGCTCAAGACATTTTCTCAAACCTCGAAGAGACCATTGGCAAAATCGACGATTTCTTGTCCTTCGAGAGGGGCTTCATGCACGGTGACATTGTGCGGTCCACAGCTGAGCCCTCAGGACAGAGTGGCAGGGTCATCAACGTGAACATGTTTGTCAACCTCGAGAGTATTCATGGGAAGGTCGTGAAGGAAGTTGATACCAAGAAGCTTCAGAGGCTGCGTTCTATCTCGCTCTGTGATTATGTGATCAACGGTCCTTGGCTAGGAAGGGTTGACAAGATAGTTGAGCGTGTCTCTGTCACCCTTGACGATGGGTCTAATTA