| mature miRNA: TGCCAAAGGAGATTTGCCCTG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109855283|gb|DW484262.1|DW484262 GH_RMIRS_046_D06_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): TCCATCTTAGCAAATGGAATGTTCAGTCACTATGATCGCCCTCGAATTGCACAACTTTGCGAGAAAGCTGGTCTCTATGTGCGAGCTCTGCAGCATTACAGTGAGTTGCCTGACATTAAACGTGTCATCGTGAACACACATGCTATTGAGCCTCAGTCGCTTGTTGAGTTTTTTGGCACTCTTTCACGAGAATGGGCCTTGGAGTGCATGAAGGACCTTCTTCTGGTTAATCTAAGAGGCAACCTTCAAATAATTGTTCAGGTTACCAAGGAGTACTGTGAGCAGTTGGGTGTTGAGGCTTGCATAAAACTTTTTGAGCAGTTTAAGTCATATGAAGGATTGTACTTTTTCCTGGGATCTTATTTGAGTTCAAGTGAGGACCCCGATATACACTTTAAGTACATTGAGGCAGCTGCTAAAACTGGACAAATAAAGGAGGTTGAGCGTGTGACCAGAGAATCAAACTTCTATGATGCTGAAAAGACAAAGAACTTCCTGATGGAGGCCAAGCTTCCTGATGCTAGGCCCCTGATTAATGTTTGTGATCGATTTGGGTTTGTTCCTGATCTGACCCACTACCTCTACACAAACAACATGCTCCGTTACATTGAAGGTTATGTTCAGAAGGTGAACCCGGGCAATGCTCCTTTGGTAGTGGGGCAGTTGCTTGATGATGAATGCCCTCTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|109884381|gb|DW513351.1|DW513351 GH_TMIRS_172_A01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGCCAAAGGAGATTTGCCCTG EST sequence (targeted fragment marked with yellow): AATCCATCCAAAAAAGTAACAAAAACCCAATCTTGATCAAGCTTTCCTCAGTTTTAAAGATGATGAAAGAGGTGGTATACATGCAACATTGGGGTGCAGTGGCACCATCCCCTCTCATTAATCCCAGAAAATCTTCCACATATCCAAGGCTAGAGACCACTCATGAAGAAGGGTGTGAAAATCATTCAGTTTTTTCAAAGAAATTCTTGCTGGTTCTCCCCCTTGTCTTGTCTTCGGCTGTCTATTTCTTGGTAAACAAGGATTTGACTCTGTGTGCATGAGCCCTTCCAATGCTTTTTTTTGCTTCAAAGGGGATCTGGGAAAACTGTGGCTTTCTCCCCCCTTTCTTTGCTTGAGATATGAGAAGCCTGGAAAATGGAGAATCTCATTAAATTCAATGCCAGGGAGAGATGAATGTTCAATAAGTTTATACCATTGTAATGTGTGAGGATATGAGATAGATGGTGGGCAAATCTGCTTTGGCGTTCATAATTTGTAAATCGTGTTTTATCATCATATCAATCCAACGTTTCCCAGTCTCTGG | |||||||||