| mature miRNA: TGCCAAGGGAGAATTGCCCTG species: Populus tremula x Populus tremuloides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|24107895|gb|BU896688.1|BU896688 X044C09 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA se TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGATTGGCTCATGTAGTACCTTGTATGGTTTTCCTGGTGGTGGTGGTGGTGGAGGACTGTTGGTGATAGTTTGACATATGGCTCCCGTGACGTATAGAAGCTTTAAATTGTTGCATGGACACACTAAACTAGATGCAAAAGGACTTACTTTTGGCAACTAATGCTGGCTATGAGACGGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAAGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTACACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTA | |||||||||
gi|60703077|gb|DN492887.1|DN492887 X044C09.3pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X044C0 TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAGGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTAGACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTATCCCTTTAGGACAAATCTCCTTTGGCATTAGGAAGTCCTTAGTTGGCTTCCTGTTATCCCTTTAAGGCAAATTTTGGTGTTTTGAACATCATCTCTTCCTTTAAAGGTTAAGATATCCATATTGATCCTCAGCATCAATCGAGAAAACATATACTTTCAACCCATTCCACATTATCAGCACCTGTAGTTCAATCCTACGGCACACCACCATTTAGTTATCTTCTACCAGTGCGTTTATCATAGCATTACAGGGCG | |||||||||
gi|3855611|gb|AI164326.1|AI164326 A059P43U Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA 5', mRNA sequ TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): CCAGAAAAACCTTCCAACGCCAGGAAAGATAGTATAGTTTTGTTGTAAGATATACAAAATAATGGCCGCCAACGGAGAGGAACAGCAGACTCAGGCCGGAAGGCATCAAGAAGTTGGCCACAAGAGCCTTTTGCAAAGTGATGCTCTATACCAGTATATTCTTGAGACCAGTGTGTACCCAAGAGAGCCTGAATGCATGAAGGAGCTTAGGGAGTTGACTGCCAGCATCCTTGGAACATCATGACCACATCTGCTGATGAAGGGCAATTCTTGAACATGCTTTTAAAGCTTATCAATGCCAAGAACACCATGGAGATTGGTGTTTACACTGCTATTCTCTCTTGGCACTGGTCTTGCTATCCCTGA | |||||||||
gi|60703077|gb|DN492887.1|DN492887 X044C09.3pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X044C0 TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAGGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTAGACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTATCCCTTTAGGACAAATCTCCTTTGGCATTAGGAAGTCCTTAGTTGGCTTCCTGTTATCCCTTTAAGGCAAATTTTGGTGTTTTGAACATCATCTCTTCCTTTAAAGGTTAAGATATCCATATTGATCCTCAGCATCAATCGAGAAAACATATACTTTCAACCCATTCCACATTATCAGCACCTGTAGTTCAATCCTACGGCACACCACCATTTAGTTATCTTCTACCAGTGCGTTTATCATAGCATTACAGGGCG | |||||||||
gi|60703077|gb|DN492887.1|DN492887 X044C09.3pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X044C0 TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAGGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTAGACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTATCCCTTTAGGACAAATCTCCTTTGGCATTAGGAAGTCCTTAGTTGGCTTCCTGTTATCCCTTTAAGGCAAATTTTGGTGTTTTGAACATCATCTCTTCCTTTAAAGGTTAAGATATCCATATTGATCCTCAGCATCAATCGAGAAAACATATACTTTCAACCCATTCCACATTATCAGCACCTGTAGTTCAATCCTACGGCACACCACCATTTAGTTATCTTCTACCAGTGCGTTTATCATAGCATTACAGGGCG | |||||||||
gi|24107895|gb|BU896688.1|BU896688 X044C09 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA se TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGATTGGCTCATGTAGTACCTTGTATGGTTTTCCTGGTGGTGGTGGTGGTGGAGGACTGTTGGTGATAGTTTGACATATGGCTCCCGTGACGTATAGAAGCTTTAAATTGTTGCATGGACACACTAAACTAGATGCAAAAGGACTTACTTTTGGCAACTAATGCTGGCTATGAGACGGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAAGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTACACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTA | |||||||||
gi|60703077|gb|DN492887.1|DN492887 X044C09.3pR Populus wood cDNA library Populus tremula x Populus tremuloides cDNA clone X044C0 TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAGGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTAGACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTATCCCTTTAGGACAAATCTCCTTTGGCATTAGGAAGTCCTTAGTTGGCTTCCTGTTATCCCTTTAAGGCAAATTTTGGTGTTTTGAACATCATCTCTTCCTTTAAAGGTTAAGATATCCATATTGATCCTCAGCATCAATCGAGAAAACATATACTTTCAACCCATTCCACATTATCAGCACCTGTAGTTCAATCCTACGGCACACCACCATTTAGTTATCTTCTACCAGTGCGTTTATCATAGCATTACAGGGCG | |||||||||
gi|24107895|gb|BU896688.1|BU896688 X044C09 Populus wood cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA se TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GGATTGGCTCATGTAGTACCTTGTATGGTTTTCCTGGTGGTGGTGGTGGTGGAGGACTGTTGGTGATAGTTTGACATATGGCTCCCGTGACGTATAGAAGCTTTAAATTGTTGCATGGACACACTAAACTAGATGCAAAAGGACTTACTTTTGGCAACTAATGCTGGCTATGAGACGGTTCTGTTTAAGACATCATTGAGCACAGAATCAAGTTTCCATGAATCAAGTTAAGCTGCAAGAAGTGTGTCTGGATGACCTGGTTTTACATTTTATTCTGTTTAGCTGACTGCTTTCCATGAGGTTTTGGCAATTGGCACTGGACCAACCTGGCAGAAAGTTTGGCTTCTAGCAAGGCAAATCTTCTTTGGCGATATAAATTCCTTTTTAAGAGTTGATAGTAATAATTACACGTTAAGAGTAAGTTCTTAAGGGCAAATCTCCTTTGGCAAAGTTACTGAAGTTCCCTCCCTATAAAGGGCAGATCTTCTTTCTTTTCTCTCTGTTGAGCTTCACTCCGATCTGCAACAGTTGTGGCTCATCAATTTATCAGCTGTGCAGTACAATCTTCTTTGGAAGTTTCTTCTTGCAGAAGCTTCAGTCCATTCGTCGGGCAAATCTCCTTTGGCATTTGGAGTCCTTGTTGACTCCTGTTA | |||||||||
gi|60708234|gb|DN498044.1|DN498044 R053F09.5pR Populus root cDNA library Populus tremula x Populus tremuloides cDNA clone R053F0 TGCCAAGGGAGAATTGCCCTG EST sequence (targeted fragment marked with yellow): GATCCTCGAAATCACCCACATTTTGGAGCAGGGCAAAGATCAAAATTTTCTGTGGCAAACTCAGCTTAACAGTTAGAATAGGGGAGATGATGTGGTTCCAAGTCAAATGATCTTTTGATGTTTTGCTTGATTTTGCTGACTTCAATTAGTAGTGATTTCTTGTACTTGCATCGATTTTAGTTTCGAAATATTTTCATGATCTATTTTTTTAGAAATATTTATTTGCTTCTACATGTGTCTTGCTGTGATTTTTACTCATTGATCGGATGCTCAAACCAATAGTATTTTCAGACCATTTTAAGTCCTGATGTATGCTTCCCTTTAATCTTCTGAGTTTTCATTTTATACTATAATAACTCCAACTAGTACAAAACCTAAGCAACTCAAACCTATGGATCTGTCTTCGTTGATTTTGTCTGTTTTCGTCGATACATTGCTTATAGGAGTTACAAAAAAAGCTTTTGAAACCAACTGAAAGGAAATGAGGATAAGAAATTTATCACCTTTTGCATAGGTAGGCAGCAGAGCAATGGTCTGCTACTATGGCATTTTCTTCAGTACGTTAGTTTAAGCTAAAACAGTCACAGGGCAACTCTCCTTTGGCAAGCCACGGAGATCAAATTCTGCAATGTTTGCAACAATCACCATTGCTTGCCAAATTCCCCGACTATGCCTTATAAACACTTCCGATGGGTCACCAACTTTGGCATAAACCATTGAAGTAATGGGGA | |||||||||