| mature miRNA: TGCCAAGGGAGATTTGCCC species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90503985|gb|DY965843.1|DY965843 CLSM17053.b1_J15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM17053, mRNA sequen TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): TGATTCTGACAATCTTTTCAAGTTTCAATCAATACTGTTCATGGCGGTCACTGGTTGCTGACGCTGTCTAATAGATTGTCTTATCGATCGTCCGATTAGCCTTTTCTCCGATGAAGTAGTAATCGGACCGGAACTTTTTTCTTTTTCTTTTTGATCGTTTTTGTTGAGTTTGTGAGTTAGGGTTTTCGTAAATCCAACGGAAGTTTCAATTTTCTTGAGAATAATTGTTTGTTGATGGAGCCTCGTGTGGGGAATAAGTTTCGACTTGGCCGGAAGATCGGTAGCGGCTCGTTTGGAGAGATCTACCTGGGTACTAATATTCAGACGAATGAAGAAGTTGCTATTAAGCTGGAAAATATCAAGACAAAGCATCCACAATTGCTATATGAATCAAAGCTATATAAGATACTGCAGGGAGGAACTGGAATTCCAAACGTGAGATGGTTTGGAGTTGAAGGAGACTACAATGTTCTAGTGCTGGATTTATTGGGTCCTAGTCTTGAGGACTTATTTAACTTCTGTAATCGAAAGTTGTCTTTGAAGACTGTTCTTATGCTTGCAGATCAAATGATCAATCGTGTTGAATTTGTTCATTGCAAATCATTTCTGCATCGCGATCTCAAGCCAGATAACTTCCTTATGGGTCTAGGAAGGCGTGCAAATCAGGTCTATGCTATTGACTTTGGGCTAGCTAAGAAATATAGAGACTCCTCAACTCATCAACACATTCCATATAGAGAGAACAAGAATTTGACTGGGACAGCTAGATATGCAAGCATGAACACTCACCTTGGAATTGAACAAAGCAGAAGAGATGATCTGGAATCTCTTGGGTATGTTCTCATGTACTTCTTGAGAGGAAGTCTCCCATGGCAAGGACTGAAAGCTGGAAATAAGAAGCAAAAATATGAAAAGATAAGTGA | |||||||||
gi|83995050|gb|DW141159.1|DW141159 CLSY9208.b1_P22.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY9208, mRNA sequence TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): CTCATCATCATTCTTTCTCTCTCTAAAACACCTTCATATGCTTCTGAATTCTGGAGTGAGAAATTCGTATGAAAAGAAGCACGCATACAGTATGTTTTACTGTGTGTAACTCTTTCTTGGCAACTGCACCCACAACATAATCATCATCTTCCACCGGTGATTACCTTTGAAATAATTCGAATCTAGATACGTTTATGTAATTTGATGGCGAAAAGTGAGGTCTTTGAAGGGGATCAGAGCGTGGCGGTGGCGAAGGTCACGACGGAGTTGAAGAAGGAATTGCATAGACTTGTGAAAGCGATTATTGAAGATTCATCATCGGAGGATGAAAATGGATTTGGATGTATTGACAGAGCGAATCAGACTTTGCAAGCTTTGAAGGAATTGAAAGAGGGAGGAGGGAAACAACGATCGTCTTCGATTAAACGGCTCAATGATAATAATCGTAACAACAATGAAAGTTCGACGTCGGTTTGGGCTTCTTGTCCACAGGAATTTCGTTGCCCTCTGTCTAAAGAACTCATGAGAGATCCTGTTATCCTCTCTACTGGTCAGACATACGATAGGCCTTTTATCCAGAAATGGTTGAAAGCTGGAAACAGGATATGTCCTAGAACCCAACAAGTTCTTTCACACACCATTTTAACACCAAATCACTTGGTCAGAGACATGATAACCCAATGGTGTAAGAATCGTGGAGTCCAATTCCCTGGTCCTCTCCAATATCCAGAACAAGACGGGTTAACAGAAGCTGATCGTGATCTTTTCATCTCTCTTCTCAAGAAAATGTCATCTACACAATCTGAGCAAAAAGAAGCAGCCAGAACTTTAAGATCATTAACAAAGAGAATGCCTTCATTTCGTGCATTATTTGGTGAGTCTCTTGAAGCCATACCTCAGTTACTTACACCATTAGCC | |||||||||
gi|90500533|gb|DY962391.1|DY962391 CLSM12686.b1_K03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM12686, mRNA sequen TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): CCCCCCATCACAGGAAGAGGGTGTACATGGCCATTACAGCGAAATCAGCTACCTTCGTTCACTTCCAACACAACAAACCCCATTCCCTCTTCCGTTTCGATTCTCGAAGCTCTGTTCCCTTTTCTCTTAAATCATCTTTCAGTCCTCCAATGGCAACTTTCTCCGTCGCTTCGTCGACTCTCGGACTGTCTGAGACCTTCACCAAATTGAAACGAGAAGGAAAAGTAGCATTCATACCATATATAACAGCCGGTGATCCTGACCTATCAACAACAGCAGAAGCATTGAAGGTGCTCGACTCTTGTGGATCAGATATAATTGAATTGGGCGTTCCATACTCTGATCCCTTAGCCGATGGACCAGTTATCCAGGCTGCAGCCACTCGATCACTGGCAAGAGGAACCAATTTTGATTCAATTCTCAAAATGTTGAACGAGGTGGTGCCAAAGTTATCCTGTCCAATTGCTTTGTTCACTTATTACAACCCGATTCTTAAGCGTGGAGTGGAAGAGTTCATGATTACTGTTAAAGAAGTTGGTGTACATGGACTCGTTGTGCCAGATGTCCCTCTGGAGGAAACCGCAATTTTAAGACGAGAAGCTTCCAAGCATAAGATTGAGTTGGTACTATTAACAACCCCCACTACTCCTAGAGATCGGATGAAAGCAATCGTTGAAGTCACAGAGGGATTTCTGTACCTTGTGAGTTCTATTGGAGTAACAGGGGCTCGTGCTTCAGTAAGTGCCAAGGTTCAATCTCTCTTGGCAGGAATCAAAGCGGAATCAAGCAAGC | |||||||||
gi|83995620|gb|DW141729.1|DW141729 CLSY9793.b1_A02.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY9793, mRNA sequence TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): CGGGGGAGGAGCCACGTGATGTTTCTTGGCTACAAACGGTGCGGAAGCTAACGGATCATGGCTGCTTTAAAGTTTAAACCCGCAGTTAGCGAACTTTTCTCCTTTCAGGGAAATAAATAGATCATCTTCTCAAAATAGCCAAATTTCCTTCTCATAATCGATAATTATCTCTCTTAGTATATGGTGCCTCGTTTGCTTCTTTTTCTGTATTATCTTTTTTCGGTTGATTCATCTTCTTCGTAAACAAACTCTCCGGGCAAATCTCCTTTTGGCAATTTACATATCTGGCTTCTTTAGTTCCTTTCGGAGCCATTTATTTATATATATAAATATAAATTAATTAAATAGATAAACTCCTTCGGGCAAATCTCCTTTGGCAAATCCAGAATTCATTTCTGGTGAAAACTTTGATCCAATTTATTTGGGGCAAATCTCCTTTTGGCATATCGGGTGTCTCTTCCAGACCCCTCTTTATCGGGCAAATCTCCTTTGGCAATTATCTCCGGTTTCTTTGGAGATCCCATCACTCTCTATATCACAAGGATTGAAGTGATGGATGTGTTTCTAAGTGATTTCGATAGCTACAGTGAAAGCAGTAGCTCTGATGATCAAGAAGACGATGAGTTCATGTACAGTGGACAAGCAAGCTGTATCCTCTCAAATCTTCAAGAAACCATTGGAAAAATCGATGATTTCTTGTTGTTTGAAAGAAGATACGTTCATGGCGACATCGTTTGCTTGATGAAAGATCACTCACAAATGGGAAAAGTAACAAACTTTGAGATGCTTGTAGACTTGGAGAATCTTAACGAGAAGAAACTANAGACATCAACTCCAAAGAGCTTCAAAGAATCCCGTTCATCTCAATGGGCGATTTCGTAATTTTC | |||||||||
gi|90512706|gb|DY974564.1|DY974564 CLSM8240.b1_P19.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM8240, mRNA sequence TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): GCAATTCAAGTTCCAGCTTCCAGTTGATCTATTCCTTTGACCCATTTCTTTCTCCAAGTTAAGTCCACAGACAGTTCCTGCCTGTCGGTGCTGACTCACGTCCACTTCCGTTTCATCTCAATTATCCGATTCGCCGTTTCTCCAATGAGGCGATAATCGGACCTCTACTGTTTTGTCACTAGTTTTTGTGAATTAGGGTTTTAATTTAGGCGATGGAGCAGCCTCGTGTGGGGAATAAATATCGGTTAGGGCTTAAGATCGGTAGCGGTTCATTTGGAGAGATCTACCATGGTACTAATATTCAGACGAATGAAGAAGTTGCTATCAAGCTTGAAAATATCAAAACAAAGCATCCTCAGTTGCTATACGAATCAAAGCTATATAAGATCCTGCAGGGAGGAACTGGAATCCCAAATGTGAGATGGTTTGGCGTTGAAGCAGACTACAACGTTCTGGTGCTGGATTTATTGGGACCGAGTCTTGAAGATTTGTTTAACTTCTGTAGTAGGAAGATGTCTTTGAAAACTGTTCTTATGCTTGCTGATCAAATGATCAACCGAGTTGAATTTATTCACTGTAAATCATTTCTGCATAGGGATATAAAGCCAGACAACTTCCTTATGGGTTTAGGGAGGCGTGCTAATCAGGTCTATGCTATTGATTTCGGGTTAGCCAAGAAATATAGAGACTCTTCAACTCATCGGCACATTCCATATAGAGAGAACAAGAATTTGACAGGGACAGCTAGATATGCAAGCATGAATACTCACCTTGGGATTGAACAAAGCCGAAGAGACGATTTGGAATCACTTGGATATGTACTTATGTACTTCTTAAGAGGAAGTCTCCCATGGCAGGGACTG | |||||||||
gi|22250944|gb|BQ865479.1|BQ865479 QGC5A23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC5A23, mRNA sequence TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): GACAGCTAGATATGCAAGCATGAACACTCACCTTGGAATTGAACAAAGCAGAAGAGATGATCTGGAATCTCTTGGTTATGTTCTCATGTACTTCTTGAGAGGAAGTCTCCCATGGCAAGGACTGAAAGCGGGAAATAAGAAGCAAAAATATGAAAAGATAAGTGAGAAGAAGGTGTCCACATCTATTGAAGCTTTATGCAGAGGCTACCCTACAGAGTTTGCATCATACTTCCATTACTGTCGTTCTTTAAGATTTGATGATAAACCAGATTATGCTTACCTAAAAAGACTCTTTCGTGATCTTTTTATTCGTGAAGGCTTCCAGTTTGATTATGTGTTTGATTGGACTATTTTGAAGTATCAACAATCACAGCTTGCCAATCCTCCATCTCGTGCTCTTGGTGCTAGTGCTGGACCAAGTAACGCGGCCCCACCTGTGGGTGCTAACCCGATTAGGCAACTAGGTGAAGAAGGTAGGCCTGCGGGTTGGTCATCTTCAAATCCGTCATGGAGTCGGAATCCTGCAAATTCCGGGACCTTATCAAAGCAGAAAATCCCAACCACCACTGATCAATCCATGAGTAGAGATTTATCGAGGTCTAGTTTTATTCGAACAACCGGCTCATCCCGGCTGACCACGGGTNGACCGGACTCATCACGTGCACGCACAACAGATGCGAGCCCCAGTGCGGTCAACAACA | |||||||||
gi|90508338|gb|DY970196.1|DY970196 CLSM3339.b1_E20.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM3339, mRNA sequence TGCCAAGGGAGATTTGCCC EST sequence (targeted fragment marked with yellow): CGGGGCTGATCCGTCCCTTCCGTTTCATCTCAATTATCCGATTCGCCGTTTCTCCATGAGGCGATAATCGGACCTCTACTGTTTTGTCACTAGTTTTTGTGAATTAGGGTTTTAATTTAGGCGATGGAGCAGCCTCGTGTGGGGAATAAATATCGGTTAGGGCGTAAGATCGGTAGCGGTTCATTTGGAGAGATCTACCATGGTACTAATATTCAGACGAATGAAGAAGTTGCTATCAAGCTTGAAAATATCAAAACAAAGCATCCTCAGTTGCTATACGAATCAAAGTTATATAAGATCCTGCAGGGAGGAACTGGAATCCCAAATGTGAGATGGTTTGGCGTTGAAGCAGACTACAACGTTCTGGTGCTGGATTTATTGGGACCGAGTCTTGAAGATTTGTTTAACTTCTGTAGTAGGAAGATGTCTTTGAAAACTGTTCTTATGCTTGCTGATCAAATGATCAACCGAGTTGAATTTATTCACTGTAAATCATTTCTGCATAGGGATATAAAGCCAGACAACTTCCTTATGGGTTTAGGGAGGCGTGTTAATCAGGTCTATGCTATTGATTTCGGGTTAGCCAAGAAATATAGAGACTCTTCAACTCATCGGCACATTCCATATAGAGAGAACAAGAATTTGACAGGGTCAGCTAGATATGCAAGCATGAATACTCACCTTGGAATTGAACAAAGCCGAAGAGACGATTTGGAATCACTTGGATATGTACTTATGTACTTCTTAAGAGGAAGTCTCCCATGGCAGGGACTGAAAGCTGGGAACAAGANACAAAAGTATGAAAAGATTTGTGAGAAGAAAGTTTCCACTTCTATTGAGTCTTTATGTCAGGGATACCCTTCAGAGTTTGCATCTTACTTCCATTATTGTCGATCTTTAAGATTTGATGACAGGCCCGATTATCCATACTTGAAGAGACTCTTCCGTAAGC | |||||||||