| mature miRNA: TGCCACAGTGCCCGATTGCCG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|23365947|gb|BU653767.1|BU653767 1112108H03.y1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGCCACAGTGCCCGATTGCCG EST sequence (targeted fragment marked with yellow): GCACGAGGGAACGATGCAGACGCTTAGCAAGAACGCTATTAAGGCCTCGCCGCGCCCTGCGGCGCGCATGCCCGCAAGCGTGCGTCCGTTCACTTCCTCGGTCAAGCCGGTTGTCTCTCGTGTCTCGGTTATTTCCCATGCGACTCTTGCGGAGACCAAGGCGGTCCCTGTGATGGAGAAGGGCGAGCTAAGCCAGTTCCCCGGCTCGGCTGGTGTCTACGCCGTTTACGATAAGAACGGCACGCTGCAATACATTGGCCTGTCGCGCAAGGTATCCGCCAGCGTTGCGACTCACATGCAGGAGCTGCCCGACCTGACCGGCTCCATCAAGTACAACATCGTCGACGACGCCAGCCGGGAGGGCCTGACGGCCGCCTGGAAGTCCTGGGTGGAGGAGACCGTGGCTGAGGCCGGCATCATCCCTCCCGGCAACGCCCCCGGCGAGACCAAGTGGCAGTCGCGCAGTGTGGCGCGCGCCACCAAGCCCGAGATCCGCCTCACGGCCGGCAAGCCCATCCAGGGCGTCACCCTCGAGGAGCTCATTGACCGGATAGTCAAGGAGAACCCGATTGTGGTGTTTGTGAAGGGCACTCGTCAGCAGCCCCAGTGCGGCTTCAGCTTCCGCATGATCAACATGCTCAACACGCTCAAGGCTGACTTCGAGGTGGTCAACGTGCTGGACGAGTTCCACAACCCCGGCCTGAGGGACGCCATCAAGACTACAGCCA | |||||||||
gi|161820647|gb|FC107798.1|FC107798 CACW7130.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDN TGCCACAGTGCCCGATTGCCG EST sequence (targeted fragment marked with yellow): CTGCGCAGTCGCCACCGCAGCAGCAGTCACCGCAGTTGCCGCTGCCCGGGGTGTTGGTGAAGGAGGAGGTCTACCACACAGAGCACCCTGTGGGGGTGGTGGGCGTCGCGGCGAAGCGGCCTGGGGACGCGCCAGCTGGAGGGGCGGTGGCGATGCCGCCGGAAGCCAAGCGGGTCAAGCTCGAGGTGCAGTAACAGGATAGCTAGGGCGGCACAGTGCTGCGGACCCGGCGCAAGCACGCGTTTGCGGCGCATTAGTAATCATTGTTGAGGGCTGCCGGAGTGCCGGAATGCACCGTGGCCGAACGCATGAGGGACACAGCCCATGCTCACAAAGAGTTAGGTACTTGATATGTCGTGGCAATATCTCTCACCTGATGAGTGTCTGTACTGCATCTGACAGCACTGTCCAATGAACTTGGCCCAGGCCTTCGTGGCGGTACAGTAGCACACAGGAACTGGCTTGAAGGGTAGCAGTTGCCGTATGGTGAAGCGCACGTGCATGTTGTCACGCCTTGGCTGTTCGGATTGAGTTGGCAGGGCAGCAGCTGTCATGGGGTGGTACGGTAGGCAACTTCGCACACTGATTTGCACTGTTTGCAGCATGGATTGCGCATGCAAGCAGCACGAAAGCTTCTGTGCTTGTCTGATTCGATGGCACTATGGCAAGGTGGCACTGTGGCAGGGGTGCTGAACGTGTAAATTGCTAAAGGG | |||||||||
gi|18690447|gb|BM519295.1|BM519295 963076C11.x9 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo TGCCACAGTGCCCGATTGCCG EST sequence (targeted fragment marked with yellow): TTTTTTACTTGATAGACCTTACATGTGACCAGCTGTCATGGCGCCATGCAAAATTGGATCCTTTCCACCGCTAAATGGCACACGTCAGTTGCATTAGTTGCACATCACTCTATCCAGGCATCCAGCACCAAGCCCGGATACGCAACGCGCAGACCCACATTGGACCACTCTACCGTGCAGCCGCGGGTTTGGGTCCATCGTGCTTCTCCGCTCTCTGGTGACACCAAGCTGGAGGAAGTCGGTGTCCTTTTAAGAATGCGGATGTTACAGAGGGGACAGTCCCAGCACCCGAAGACGCCGAGCCATCACATGCTATCAGGGCCCTTTTAAGCAGCTAGTTATCCGTGTGCGACTTATGCTTGATGCTACTCTGCCCGTTATACAAGCATGTCAAGTGCCAGCCGAAGAACCGCAAGCGGGCACAGTGGCACACCGGCAATGAATGACAGCAACTACCATTTCATCACCCCATAGCCGTTCGGCGAGGCCCACAATGCCGCAACGCGCACTCGGACACGCGCTAGACACGCATGGCTCGGAAAGTCAACACGCACAACTTTGTTTCGGCGACTAGGCCCTTTAATACTGTCGAGTCGAATGCTGCTGTGAATGTGATTCCGCCCCCACAGCGCCCTGCTCACAT | |||||||||
gi|49458797|gb|BP086710.1|BP086710 BP086710 Chlamydomonas reinhardtii C9 various conditions Chlamydomonas reinhardtii cDNA clone TGCCACAGTGCCCGATTGCCG EST sequence (targeted fragment marked with yellow): CTGGAACGATGCAGACGCTTAGCAAGAACGCTATTAAGGCCTCGCCGCGCCCTGCGGCGCGCATGCCCGCAAGCGTGCGTCCGTTCACTTCCTCGGTCAAGCCGGTTGTCTCTCGTGTCTCGGTTATTTCCCATGCGACTCTTGCGGAGACCAAGGCGGTCCCTGTGATGGAGAAGGGCGAGCTAAGCCAGTTCCCCGGCTCGGCTGGTGTCTACGCCGTTTACGATAAGAACGGCACGCTGCAATACATTGGCCTGTCGCGCAAGGTATCCGCCAGCGTTGCGACTCACATGCAGGAGCTGCCCGACCTGACCGGCTCCATCAAGTACAACATCGTCGACGACGCCAGCCGGGAGGGCCTGACGGCCGCCTGGAAGTCCTGGGTGGAGGAGACCGTGGCTGAGGCCGGCATCATCCCTCCCGGCAACGCCCCCGGCGAGACCAAGTGGCAGTCGCGCAGTGTGGCGCGCGCCNACAAGCCCGAGATCCGCCTCAC | |||||||||
gi|161811739|gb|FC097476.1|FC097476 CACW25474.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGCCACAGTGCCCGATTGCCG EST sequence (targeted fragment marked with yellow): TAGCAAGAACGCTATTAAGGCCTCGCCGCGCCCTGCGGCGCGCATGCCCGCAAGCGTGCGTCCGTTCACTTCCTCGGTCAAGCCGGTTGTCTCTCGTGTCTCGGTTATTTCCCATGCAACTCTTGCGGAGACCAAGGCGGTCCCTGTGATGGAGAAGGGCGAGCTAAGCCAGTTCCCCGGCTCGGCTGGTGTCTACGCCGTTTACGATAAGAACGGCACGCTGCAATACATTGGCCTGTCTCGCAAGGTCTCCGCCAGCGTAGCGACTCACATGCAGGAGCTGCCCGACCTGACCGGCTCCATCAAGTACAACATCGTCGACGACGCCAGCCGGGAGGGCCTGACGGCCGCCTGGAAGTCCTGGGTGGAGGAGACCGTGGCTGAGGCCGGCATTATCCCGCCCGGCAACGCCCCCGGCGAGACCAAGTGGCAGTCGCGCAGTGTGGCGCGCGCCACCAAGCCCGAGATCCGCCTCACGGCCGGCAAGCCCATCCAGGGCGTCACCATCGAGGAGCTCATTGACCGGATAGTCAAGGAGAACCCGATTGTGGTGTTCGTCAAGGGCACTCGTCAGCAGCCCCAGTGCGGCTTCAGCTTCCGCATGATCAACATGCTCAACACGCTCAAGGCCGACTTCGAGGTGGTCAACGTGCTGGACGAGTTCCACAACCCCGGCCTGAGGGACGCCATCAAGAACTACAGCCAGTGGCCCACCATCCCCCAGCTGTACATCAGCGGCGAGTTCGTGGGCGGCGCGGACATTGC | |||||||||