miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGCCGATTTCTGAATCGGTA
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73873837|gb|DT476575.1|DT476575 WS01230.B21_B06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_B06 3', mRNA sequence 

TGCCGATTTCTGAATCGGTA
||||.|||.|||||.|.. |
ACGGTTAAGGACTTGGTTTT

EST sequence (targeted fragment marked with yellow):
AATATGCATCTGGGAGACGAATCAGTGAGGCAATCGGTGGTCAAAGAAGGCGGAATTCGGGCATTAGTACGCGTTTTTGATCCGAAAATCGCGTGTTCTTCAAAATCTAGAGAGATGGCATTAAGGGCAATTGAGAATCTATGTTTCTCTTCAGCTAGTTATATCAGTGTGTTGATGAGTTATGGATTTATGGATCAGCTTCTTTTCTTCCTTCGGAATGGAGATGTTTTGGTTCAGGAATTGGCACTGAAAGCAGCATTTAGGCTCTCTGGAACATCAGAGGAGACTAAAAAGGCAATGGGAGATGCTGGATTTATGTCAGAGTTTGTAAAATTTCTTGATGCAAAATCATTTGAAGTTAGAGAAATGGCAGCTGTGGCACTCAACAGCCTGGTCTCAGTGCCTAAAAATCGTAAAATATTCGTGCAGGACGATCGCAATGTGGGTTTTCTTCTTCAATTGCTTGACCAAGAAGAGACAAATTCAGGTAGCAAAAAGTTCTTGATCTCTATATTATTGTCCTTAACAAGTTGCAATAGTGGAAGAAAAAAGATTGCCAATTCTGGTTATTTGAAGAACATAGAAAAACTTGCAGAAGCTGAAGTTTCTGATGCTAAAAGACTTGTCAGGAAGCTATCTACAAATAGATTCCGTAGTATGTTAAATGGAATCTGGCATTCTTGATTGCAATTCTCTTTCTTTCACTGTATATGTAAAAGAGTGGTTTCAAAGTTTTCTTCTTCTTTTTGTTTCTTAATCTCACACATGAGTCTTTCTCTCTGTTTCTTTCTTCTTCTTTTTTACTTCTTTATTAATTTTTCCCATCTGCAAAATCAGCTTTAGAGCAGCTTTCTATTGAATTTGTAACCATAAGCAGATACATATCTTATAAAAAGCTGTTATAAAAAAAAAAAAAAAA


gi|73869058|gb|DT471796.1|DT471796 WS0122.BR_C01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0122_C01 5', mRNA sequence 

TGCCGATTTCTGAATCGGTA
||||||.||||| |||| ||
ACGGCTGAAGACCTAGC-AT

EST sequence (targeted fragment marked with yellow):
GAGGCAGCTCGATTGAAAGTTAGAAGCACGAAGAGCAGATGAGAAGCAGCGTTACATTATATGCTTTTTTTGTCTTCTGAAAATTAAAGGGGAGGTGGTTCTTCTCCGTTGCAGCAGAAAGACCCTCAAGTTTTCCCTTTCCTATTTTAAGCTGGCATTAAATTCAATTCAAGGTTGTTTCTTTTGATCAAGATGCAGCAGCAGCAGCACCAACAAGTATACAGATCCATCTATCCATAATAATTAATAACTAACAATGGACACTGGTGGCAATTCTCTTCCGTCTGCTGCTCCTGATGGGGTTAAGAGAAAGGTTTGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATGGCCAGGGTCACCCCATGAAGCCCCATCGCATTCGAATGACCCATGCTCTCCTTGCCCACTACGGCTTGCTTCAGCACATGCAGGTCCTCAAGCCCTTTCCTGCTCGTGACCGCGATCTTTGCCGCTTCCATGCTGATGATTATGTCTCTTTCCTCCGCAGCATCACCCCTGAGACCCAGCAGGACCAGCTCAGGCAGCTCAAGCGCTTTAACGTTGGCGAAGATTGTCCTGTCTTTGATGGCCTCTACTCCTTCTGCCAGACTTACGCTGGTGGCTCT


gi|52494228|gb|CV241253.1|CV241253 WS02511.B21_K09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02511_K09 3', mRNA sequence 

TGCCGATTTCTGAATCGGTA
. ||||||||||||.||. |
GAGGCTAAAGACTTGGCTCT

EST sequence (targeted fragment marked with yellow):
AATGCTGAAAATAATCTCGGTTCAGAAATCGGAGTTCATGTTATGGAAAGCATTTCAGCCGCCACTTCTGATTCCACTCAAGTTCCAAAGCTTGATTCTCCTCCAAGCAGTGTGTCAACTAATGGTGTTTCTTCACCTTCCGCTGCTGCAAGTTCAGAAACCTCTGATAGCCCAGCAGCTTCAAAAACACCAAATCAGGAGCATGTCTCGGTCCATAAAGAGAGAGAGAGTGCAAATGCCGGAGATGGTGAGACTGATTGCTCTGGTGGAGCATCAAATGAGAAAAATGCAAAACCTGTTATTACAGTCAACATTGAGCCGGAGTCCAAAGTGGTTCAGCAAGACATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACAGAGTCACTGGCCAAGATGAAGCTTCCTTTGGACATTGATAGTGGACCAACCAGTTCAGGAAGTTCAAGCTCCGATCAGAAAATGCAGGCATCAAAGAACACAAGTTCCCGTGTGTTTTATGGGAGTCGGGCTTTCTTCTGAGCTTTGAGTTCTCCTAGTTCTGAGGAAAACACACAGGTGATTTTAGGCTTTAGCATGGTGACTAATACTAATATAATAGTGAAGTATAATAATGTATCATGTAGTGTGTTGTTTCCTTCTGTACGTTGAGATATGTTTAGCAGAAGGGGAAATCATGAATTTGTAAGCTTTAGTAGCTTTGTTTCATAGCAACTGCTGATGGTATGTATACAAGAACATTTCCCCTTCTATTTTCACTTTGCTCCATGTTGCTTCAAAAAAAAAAAAAAAAAA


gi|60711318|gb|DN501128.1|DN501128 UM62TB07.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM62TB07 5', 

TGCCGATTTCTGAATCGGTA
||||||.||||| |||| ||
ACGGCTGAAGACCTAGC-AT

EST sequence (targeted fragment marked with yellow):
GTCGCCACAGCCGTCCTCGATTCCAACTAGTCTTCAAGAAAGCAGTGCAGTGCATTGCAGTGCAGTGTCACATCAATTTAGGGTTGTGCAGCTGCAAGTAGAGAGATCCGTGTATCCATAATAATTAATAACTAACAATGGACACTGGTGGCAACTCTCTCTCGTCCGCTGCTCCTGACGGGGTTAAGAGAAAGGTTTGCTATTTCTACGATCCAGAAGTCGGCAATTACTATTATGGCCAAGGTCACCCCATGAAGCCCCACCGCATTCGAATGACCCATGCTCTGCTTGCCCACTATGGTTTGCTTCAGCACATGCAGGTCCTCAAGCCCTTTCCTGCTCGCGACCGGGATCTTTGCCGCTTCCATGCCGATGATTATGTCTCTTTCCTCCGCAGCATTACCCCTGAGACCCAGCAGGACCAGCTCAGGCAGCTCAAGCGCTTTAATGTCGGTGAAGATTGCCCTGTTTTTGATGGCCTCTACTCCTTCTGCCAGACTTATGCTGGTGGATCTGTTGGTGGTGCCGTCAAGTTAAATCACAACCTCTGTGACATTGCTGTCAATTGGGCTGGTGGCCTCCATCATGCTAAGAAGTGTGAGGCTTCTGGTTTTTGTTATGTCAATGACATCCTGCTTGCAATCCTGGAGCTTCTTAAAGTGCATGAGCGTGTTCTGTATGTGGATATCGACATTCATCACGGTGACGGTGTGGAGGAAGCATTTTACACCACTGATAGAGTCATGACTGGTTTCATTTCCATAAATTTGGAGAT


gi|73888538|gb|DT491276.1|DT491276 WS02547.C21_E15 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02547_E15 3', mRNA sequence 

TGCCGATTTCTGAATCGGTA
. ||||||||||||.||. |
GAGGCTAAAGACTTGGCTCT

EST sequence (targeted fragment marked with yellow):
GAGAGCTTGGCCATTTCTAATGCTGAAAATAATCTCGGTTCAGAAATCGGAGTTCATGTTATGGAAAGCATTTCAGCCGCCACTTCTGATCCAACTCAAGTTCCAAAGCTTGATTCTCCTCCAAGCAGTGTGTCAACTAATGGTGTTTCTTCACCTTCCGCTGCTGCAAGTTCAGAAACCTCTGATAGCCCAGCAGCTTCAAAAACACCAAATCAGGAGCATGTCTCGGTCCATAAAGAGAGAGAGAGTGCAAATGCCGGAGATGGTGAGACTGATTGCTCTGGTGGAGCATCAAATGAGAAAAATGCAAAACCTGTTATTACAGTCAACATTGAGCCGGAGTCCAAAGTGGTTCAGCAAGACATAGTAGACATGTACATGAAAAGCATGCAGCAATTCACAGAGTCACTGGCCAAGATGAAGCTTCCTTTGGACATTGATAGTGGACCAACCAGTTCAGGAAGTTCAAGCTCCGATCAGAAAATGCAGGCATCAAAGAACACAAGTTCCCGTGTGTTTTATGGGAGTCGGGCTTTCTTCTGAGCTTTGAGTTCTCCTAGTTCTGAGGAAAACACACAGGTGATTTTAGGCTTTAGCATGGTGACTAATACTAATATAATAGTGAAGTATAATAATGTATCATGTAGTGTGTTGTTTCCTTCTGTACGTTGAGATATGTTTAGCAGAAGGGGAAATCATGAATTTGTAAGCTTTAGTAGCTTTGTTTCATAGCAACTGCTGATGGTATGTATACAAGAACATTTCCCCTTCTATTTCCAAAAAAAAAAAAAAAAAA