| mature miRNA: TGCCTGGCTCCCTGTATGCCA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188444732|gb|EY730003.1|EY730003 CS00-C3-704-024-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GCAAGTACAGCATGCAGCGCTACCGCAGCTCGTACGTGGGCTTTGCCCCGGTGTCCGATCCCAAGATCGTGGTGGCCGTCTCGATCGACGAGCCCACGGTCGGCGGCTATTACGGCGGCGCGATCGCCGCGCCCGTGTTCTCCCATATCGTTGGCGGGAGTCTGCGGCTGATGGGGGTGCGGCCGGACGCGCCCTTCGAATCGACAATTGTTGCTGGTATCAAGGAGCCAGGCAGATGAGCGCCAAAGGCTTCCTCTCATCCCCCGCCGCCACGGTCGAACAAGCCGTGGCGTGGTTGCATTCGCGCGTGTCGTTGACCGCGCACCTGAAGCTGGACTCCCGCGAGATCGAGCCGGGCGATGTGTTCGTCGCCTGCCCGGGGCTGTCCAGCGATGGCCGTCTATATATAGAGAAGGCGTTGGCGCTGGGCGCCAGCGCGGTGTTGTTCGAAGCGCCCGCGACCGAGGCCATCGAGGCCG | |||||||||
gi|55403913|gb|CV718260.1|CV718260 UCRCS08_0010E02_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CCCTTTTATATGTTACAATCCCTCAACTGCTGGACTGGTCCAAATCCAACCAAAGCCAAGCCAGTAATTAATATGTTAAACAATGCGTGGTGTGGCCTAATATTACTTAAGTTAATTTTCTGGTTTTTTTAGACCATAATTTGCGCTTAAAGATGGAGAGCATTGATTAATAAATATGATTGCATGTTAAGCAACAGTAGTTGGTATCATGAAACAAATTAAGTTCAAACAAAAGACAATCTTAATTTAATTTTCTCTACACTTCAGACAAAATCAACCCATCACAAGCTAGATTGATGGGGTTTTGTTGTCTGATTAACTAGAAAACCTGTTGATACTGAACATCTAGTTTTAATTAGGAAATTTGGCAAAGACACATGCAATTATATGTTTAATAACTGCAGTAAACGTGAGTGTGTAATAAGATGATGGATCAATAAAATGGGAAACATTTAATTAGCTGATGAAACTCTTGCGATGTCAAATTCAGTGTAATATACAATTCCTCGTTACAGGTGTCATGGATATTAATTATGCTTTCACAAAATGTCTCATCACTGAAACCCTAAAATCCATAAAAGGACTAATTCGAAAGAATTAAAGAAGAACATGAGAGATTGATTGTACCTTTTAGGCACAAAGAGTGAACCCTGCATCTTACAAAATTACAATGCTGCCCTTGTCAAGTTGGAAGAAATGAAAAAAAAAATTAACCTGCAAAAAAAAATCAAGAATCCATATCTATGGGTATATATTATACATGGAATATGCATGGCTCCTCATACGCCATCCACGGAGGCCATCGATGTTTCGATTGACTCTGCAAATGGCATACAGGGAGCCAGGCTCATAATTATAAATATATA | |||||||||
gi|55403915|gb|CV718261.1|CV718261 UCRCS08_0010E02_r Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CTTTCTCTCACAAAAATAAATTTAAAAAAACCACAAAAAAATTGGCCTAGCTTCTATCTTCCTTCATCCCCTATGTTTAGCTTCTTGTCTTGCTTGTTTCATGCCAATTTCAAAGGGCATGTGTTCAAATAACTTGAACACCCCACAATTAATTTGATTATGAGCCTCATGAGCTCCTAATATTTGCCTCAGATCTCTGTTTATCTACTTAAATCTTTTCTAGCTCTGGATATTTATGATCATGAAGCACCACAAGGCATTTCTTGTCCATGCAAACATTCAGAATCCCATTAATTGATGCACATATTCGTAAACACATGCATATATGAGTTACAAAATCATGCATATTATACCTATGTCTATATATTTATAATTATGTGCCTGGCTCCCTGTATGCCATTTGCAGAGTCAATCGAAACATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGCATATTCCATGTATAATATATACCCATAGATATGGATTCTTGATTTTTTTTTGCAGGTTAATTTTTTTTTTCATTTCTTCCAACTTGACAAGGGCAGCATTGTAATTTTGTAAGATGCAGGGTTCACTCTTTGTGCCTAAAAGGTACAATCAATCTCTCATGTTCTTCTTTAATTCTTTCGAATTAGTCCTTTTATGGATTTTAGGGTTTCAGTGATGAGACATTTTGTGAAAGCATAATTAATATCCATGACACCTGTAACGAGGAATTGTATATTACACTGAATTTGACATCGCAAGAGTTTCATCAGCTAATTAAATGTTTCCCATTTTATTGATCCATCATCTTATTACACACT | |||||||||
gi|188394601|gb|EY745401.1|EY745401 CS00-C5-003-012-B12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA se TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): AAGAAGTTGCGGCTCCCGCCCAATTAGACTTCCCTTTTGACGGCCAATTCACTATGCCGTTATTTTCAGGTAACCCCCTTGGGCCGAGCAGCCCCTTGTGTTGTCTATCTGACAATACTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAATATCTTCATCAGATTTCCATGTTAACAACAAACTGCAGTCAGGGCTGTTTCTATCCAGTTTGCAGCGGTTCACTCCAAATTCTAGAGATTCTGATGGCATCCTGACAAGCCACACAAACAGTAGTGAGAATTTATCTTGCTTACTGACAATGGGGAATTCTAATCAGAATTTGGAGAAATCTGAGAACATAAAAAAGCACCAGTTTTTACTCTTTGGTCAACCAATACTCACAGAGCAGCAGATCTCACACAGCTGTTCCGATGATGTAGTTTCACAAGTGCTTGGGAAAAGTTCATCAGATGGGCATTCAGATAAAGTTAAAGCATCTTCTGATGGTTCAGGATCTATTCATGAGCAGAGAAATTTCAATAGAAAAGTCCTCCAGTTCTGAATTTTTCTGGAATCGAAGTTTCCAAGTGACTGAATCCTGGTCTTGATAACTGGTCATTGCAAGGGTTTTCTTGGAGTCAGAGGATGTTGGGGCGGACTCTGGACCTCTCAATGCTGAGTTCTTATGAAGAGCTGTATCAAAAGGCTGGCCATTCTGGTTTGGAATAAAAAGAACACACAATGTAAAGCCATGGTGCTTATATCAAAACCCCCCTGGGGCCTATAAAAAAAACACCGAAAAAGAACACCTTCAATAGGATTTTATTAAAATCCCCAAAAAAAAACTGGACAAATTTTG | |||||||||