| mature miRNA: TGCCTGGCTCCCTGTATGCCA species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166145596|gb|FD576484.1|FD576484 RS3EF14TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GCAAAACGTGAAGCGGGTTAACCCGTGGTTAGTCGAACTGGTATCCAACGTACATCCCATCCCTCTTACGTCGTTCTCGCCGCCGAGGAAGAAGATGAGACTTCCTCAGCATCCGGATTATACAACCTAATCAACTCAATCCCAGTACCTTCTTTCCCAAGCAACCCTCTCATCAGATCAAACCCGTTAAGCTCTGTTCTGGACAATGTTCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCATCAGTACTACGGGTTATCATCTTCCGATCTCCACCATTACTACTTAAACAGACCTCCTCCTCCACCACCTCAACCATCATCAACTTTCCCCCTCCCTCAGCCTCTAGGGTTGCGAAACATCAATAACAGAAACGAGAAAGGGTTCTGTTTCTTGACCATGGGGACAACACCGTGTAACGATACGGAATCTAAAAAGTCTCAACACATCGTGTTGTTCGGAAAGCTCATACTACCCGAGGAGCAGATCTCAGAGAAAGGGTCAACGGATACGGCAAGCACATCAGGCGGATCGAAACTATCCTCACCAGACGAAGGTTCACCTTGCTCCAACAAAGCTCATGATGCAGCAGGTTTGGAGACAGGGCACTGTAAAGTGTTTATGGAGTCAGACGACGTGGGTCGAACGTTAGACCTATCGGTTCTAGCTCGTACGAAGAGCTGAGTAGGAACTGTCTGACATGTTTGGTATCAAAGGCTGAGATGTTGAGCTCTGTCTCTATAGGATGCGTCTGGTGCATCAGTACGCAGAACGACCTTTCAGTGAGTCTGAGACAGCTCGGAGATGACGATTCTGAC | |||||||||
gi|167432585|gb|FD941248.1|FD941248 RS1GY89TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GGAGGGCTTCAAGAACCCTAACCTCAATTTCTCTCGTCTCTTTCAGGCCTTCAAGAACCCTAACCTTAATTTCTCCTGATAGAGAGAGAGCAAAAGATCTTTTCAATTCCATTTCCGTACATGCAAATCACAGTCCATGTTTAAGCTTGTTTATAAACATCTAGCTGATATTGTTGCTTATATATGTTCATGCATGTTCAGTTGGATATAGCTTTACTTTAAAATAGAATTAGACATCGATCTTTTGTAGGCGAATAGTTTCAATACATACACGTTTATGCATCATGATACATATATACATAGTACATATATGCCTGGCTCCCTGTATGCCATACACTAAGCTCATCGACCATCGAGGACTTACGTGGATGGCGTATGAGGAGCCAAGCATATTTTCATATGCATATACATCTTTCTAATTATGTTTTTGCACCAGCTAATTAAATTGTGTTGAGCTTGTTTTATAGAAGTCGCTGTTAATTTCTCCATCCAATCATGTGCGGAAGATTACAAGGTAGCTGATGAAACCGTATAGAGACATATGATTTGTGGTCTTCAGTATATTCCACTGATAGATATTTTGGTGACCCTCTGATTACGATTTAGTCTTTCGATTCGTATTTTTCTGGTACAAATGTTTGTCTTGTTACTGCACTTCTTACGAGGATCCCTTCTGTAATCACATTAACGTAGTTTAGTTGGTTATGAAATTGTTAAATTATATCGATAGCTAATTATATTCCCGTACGTTCAGATCAAAAAAAAAAAAA | |||||||||
gi|158923795|gb|EX896877.1|EX896877 RS2CB63TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GAAGAGGAGGACAAGCGATGGATCCAAGTCACTATGGGTACACTACTTACACTACAGTTCCTGCTGGCATGCAGGGAGCCAGGCATTATGAATTTGGGTCTTACAACAACAACAACAACTCAACCGGATTCATCGGAGAGAACGCTCACCTTGAGTTCATCAACTTCTTTAGTCCTCTTCCCGGTTTGGGAAGAGTCTCGACGTCTCTGATGGTGAACTTTGGCGGCAGTCCGCCGCCGTCAGATGACTTGTCGCCTAATAGCAACACCACTAATGTTTCCTCTGGAAACGACGCAGGCGGGAACAACCGAGGCGTTAGTTTTCAGCTGTTTGGGAAGGTGATAAACGTGCAGGAGCCTGCCGAGAGCGGTGGTGTGGCTGAGTCTAGCTTGTGTGAAGATGATGGAAGCAAAGAGTCCAGTGACAATGAGGCCCAGTTGATGCAGGGTCATGGAGGAAGGTGAAGCGTCTAGGGGTGCCTATAAAGATTCCAGCAGAGACACAGAGGTAATAGCTGCAAAGGTGAAGGGAATGAAGGAATGTTTGGAATCTGTACGTCCCAAGTAGCAGGGGTTGGTTGGTAACAAAAAAAAAAGTATCTTATGGTTTTTCTTTCTTTGCATTTTGACTTTCTCTG | |||||||||
gi|158919494|gb|EX892787.1|EX892787 RS1CB06JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TATTTTGTTTATTGATTCTCATCTTCTCTTTTGTATTTTCAAGAAATCGGCATTTAGGGTTTCAAGAACAGTTAACCTCAATTCCTCCTGAGGAGAGAGAGAAAACAAAAGATATCATCAATTTCATTTTCTTACATGCAAATCATAATCCATGCTTTAGATTGTTTCTATAGTCATACATATGTGCTGTTATATCTGTTCATGCATGTCCAGGTGGAGATCTAGCTAGATATAGCTTTACTTAAAAACATAATTAGACATCCATTTAGGGCAATTAGTTTCAATACATAATAACATGTATATGCATCATGACATATATGCATATATGTTGATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATATTCTCAGCATAGACATATTTTCTAATTATGTTATAGTACTAATTAAATTGTATTGAACTTGTTTTTTAGGAATCTATTTTAATTGCTCCATCCAATCATGTGAAGAAGATTAGAAGGTACCTCAGTGAACCGTCTAGCTACCACCGATGCTTCTTGTGGTCTCCAAAATTCCACTGACGGATATTTTGGTGAAATCTTACGATTAGTATTTTTCCACTACAAATGTTTGTCATGTCACAACACTTCTTACGAGGATTTATTCTGTGATAACATCAATGTACAACTCAAAAAAAAAAAAAAAAA | |||||||||