| mature miRNA: TGCCTGGCTCCCTGTATGCCA species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117722255|gb|DB716527.1|DB716527 DB716527 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2023F0 TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GAATATAATTTTGTTTATGCTATTATAGTTTGTGTAAATTATATATTTTCACTCTCCTAAGCACATTAACCCATATTTAACCCCCACACCTCGTGTCTCTCTCCGCTGATATCTGCAAAATAATAATCAAAAGGTATGTCTCATCCTAATAATCTTGGAAATTCAATCTTCTATTCTTGAAAAAATTACCTTATTCAATAATACCCAATTATGTTTGGTGCCAAATTTTATCATAACTTTTGTAATTTCGTTATTATCTTAAAAAGTAGAAAGGAAAAACTTGCCCTTTTTGATTCTTATAGTTCAAGATACCATATACAGTGCTGCTTGTATGTGGCATAGGATAATTGGTTGTTCTTTTATTGTTTAAAAAGGAAAGATTGGTCTTTTATTTCTCTGTGTTTTAAAATCTTGAATTTTTTGCCTGTTGTGTTTGAATTGTTGGGGGGAACAGAGACAATGGGGAATCTGTTCTGCTGTGTACAAGTTGACCAATCCACAGTAGCTATTAAGGAGAGATTTGGCAAGTTTGATGATGTGCTTGAGCCTGGATGTCATTTCTTGCCATGGTGTATTGGGAGCCAGGTAGCTGGTTACCTAACTTTNANNNTGCAGCAGCTTGATGTACGCTGTGAAACCAAGTCAAAGGTGCGTAAATGNATGTGANTTGGCGTAACTCTCGATGTTGATGGAGTTTTATTATCANNNGTTAGCTTGTTTNACAGCTGCTTGTTTTTCCANTA | |||||||||
gi|30319638|gb|CD002900.1|CD002900 EST0956 Normalized cDNA library from ripening tomato pericarp Solanum lycopersicum cDNA clone TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): GTACTCAACTATTCCAGGAGAAAGACATGCTACTACATTAGTTTGCAGAGAAAGGAATGCAGGGAGCCAGGAAATAAAAAAATTCCAAGGCCAGCAGATAAAACAGGTTCAAGAACATCATGAAAGTTCTGAATGGATCACTCGTATAAAAACCACAAGGTTGACGACTTCCAGCCAGAATCATCAGGAAATTATGAATTCTATTCAAGCACTTCAGAAATCAGAAGTAAATAAACATACCAAAGCTCAAGGACCATGGGGGTGGGCAATCGATTCTACTTCTGGGAATGGTTAAACTTATGTGTTAGAATGTAAGAGGGCTTAACGGCCCTAATAATAAGCAGAAGGAGGTTCAACTTTTCTGCAATAATTAAGATGTAGGTCTGGTAAGTCTTTTGGAGACCAAGGTCAAGACCAGTAAGATTGCCAATATTTCAAACAAGTTATTTGGAGGGTGAAAATATATTACTAACCT | |||||||||
gi|225391901|gb|FS185530.1|FS185530 FS185530 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3035L12 TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): CTCCGCTGATATCTGCAAAATAATAATCAAAAGAGACAATGGGGAATCTGTTCTGCTGTGTACAAGTTGACCAATCCACAGTAGCTATTAAGGAGAGATTTGGCAAGTTTGATGATGTGCTTGAGCCTGGATGTCATTTCTTGCCATGGTGTATTGGGAGCCAGGTAGCTGGTTACCTAACTTTAAGGCTGCAGCAGCTTGATGTACGCTGTGAAACCAAGTCAAAGGACAATGTATTTTTAACTGTTGTTGCTTCTATACAATACCGTGCTCTGGCTGATAAAGCTACTGATGCTTTTTACAAGCTTAGTAATACTCGATCCCAGATCCAAGCCTATGTGTTCGATGTAATCAGGGCGAGTGTTCCAAAGCTAAATCTGGATGATGTGTTTGAGCAGAAGAATCAAATTGCTAAAGCAGTGGAGGATGAACTTGAAAAGGCAATGTCTGCTTACGGGTATGAGATTGTTCAGACACTTATAGTTGATATAGAGCCAGATGAACATGTTAAGCGAGCTATGAATGAAATCAATGCAGCTGCNNNNTTGAGAGTAGCCGCCAATGAGAAAGCAGAAGCTGAC | |||||||||
gi|58217009|gb|BP880486.1|BP880486 BP880486 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA17CD12 5', TGCCTGGCTCCCTGTATGCCA EST sequence (targeted fragment marked with yellow): TGTGTTAGGGCATCTTCAGTGAATGCTGCAATGAGGATTCAATGGTGCTCAGGAATGAGGTTCAAAATGGCTTTTGAAACCGAGGATTCTTCTCGAATCAGTTGGTTCATGGGAACTATATCCTCCATTCAACTTGCTGATCCCATCCGCTGGCCCAATTCGCCATGGAGGCTTCTTCAGGTGGCATGGGATGAACCTGATTTATTGCAAAACGTAAAACATGTCAGCCCATGGCTTGTCGAATTGGTCTCAAATATGCCAGTCATTCACCTCTCGCCCTTCTCACCGCCAAGAAAAAAGCTGCGTCTACCACCAGATTTCTCACTTGACAGCCAGTTTCAGTTACCATCTTTTTCAGGCAACCCCCTCAGGTCCAGCAGTCCTTTCTGTTGTTTATCTGACAACATCACTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGAGTACCTTTATTGGATCTTCACCTTAGCAACAAATTA | |||||||||