| mature miRNA: TGCCTGGCTCCCTGTATGCCG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88246265|gb|CI246114.1|CI246114 CI246114 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTAAAAAAGCAAGCATTGCCAAAATGCTTTTATTCATATATAGACTTACAAAGATCACAACAAAGGTTCCAATGATAAATATCCATGTTCTCTCCACCCTGGGCTGCTCCTTACATTAAAAGAATGGAGATAGCTATGGACCTCCTTATCCAAATTAAGCGTAGCACATTGACCATAAAATTTAACAACAGTTCCTCCCACCCTACAAGCGACTCAGCAGCAAGCAGCAACCAAATATTACCGAAAATTTGAAGCATTTCACATCTTAGCAGCACGCGCGATCTTGAACCACTCGGTGTGGAGGGAGCCGGGCATGTCGACCCTCTCGTAGGTGTGAGCCCCGAAATAGTCCCTCTGTGCCTGCACCAGGTTGGCAGGCAGCCTGTCCCTCCGGTAGGAGTCGAAGTACGCGAGACTCGCCGACATGCCTGGGGTGCTGAC | |||||||||
gi|33803323|gb|CF327535.1|CF327535 NACL--02-B01.g1 Rice callus plasmid cDNA library (NACL) Oryza sativa Japonica Group cDNA clon TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGATCCATGTTTATCAGGTTTAATTAAGCGTGTAATCTTAAGTGAGCACACACAATGAGTCAATGAGAGAGAGATAGAGACAGAGAGAGACGGTCATGCTTGGCTCCTCGCACGCCATCCGCAGTAGAGCCAAACGTACGAACACAATGCCTGAATCTCGCCGGGAGAAGGCAGTTGTTTCAACTGAGTTTGGCAGCTACGCGAGTGGCATACAGGGAGCCAGGCATATCCCCTTTTTTTCACCTCTCTTTTGCTTTTCAGCTTCCAAACCTTCTGCATCCTTGCCAATATGCCATGTATTCCCTTCTTTCAACACTGCAGTGCTCATCTCACACACACACCCCAATGCTAGACTCAAAGCCCAGAACACTTGGAGAAGAGAAGAGAAGACAACAACAACTCCTATATATGTACATCAACACAACTACTACTACTCCACCAAAGCCAAGAGCTCAGCTGGCATGACATTGTGATGGAGATGGCAGCTGGAGAAACAAGAAGAAGAAGAAGAAGAAGAAGAG | |||||||||
gi|66929943|gb|CX116791.1|CX116791 EI106C10 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): CAACAGAGAGACAAAAGTAGTGGGCCAGATAGCAGGTCAGTGCGAGATATGAGAAACCCTGTGTCATGTAAACGACGAACGCGACACCCTGCTAGTCATTAACAATCTAGCAGGCTACTGACTGTACAGCACGGCCAGGCGACACCGCGTTGCATCANTGAATACACTAGGGGTGGTGAACAACAACGTAGCAGAGACCGCCAAGGACTGGGGACCAACCTTGCTGAACAATGCATATTAGCACACAAGACATACAGTACACTAAACCAGCCACAAAAACAAGATCAGAAACAAGCACAAGACAGATTACACAAACGAAAGGCAAACAGAGAAAGGAAAAGAAGTACAGAAGCGACGAACAAGTAAGAACAGCAACAATACTAGGGGCACACGTGGGACCAAGGCAAACAGGCCTATTATATATCGGATGAGCATATAGTTAATATCCCCATGGGGACAGATAGATAGACACAGACGAAGCGACGATGTAAGCGACGATGCAGAGAGCAGCAGGACTACCGCGACAGACTCGAAACAACAGACGATGCGAACGCGCCCGAGGTCGCGCGGAGAAGCCGGGGCGCGCGCGCGCAGAGCCGCGGCAGGCGAGCCAGGCAGCTGACGAAGCCGAGACAGCCCGACCAGCTAGGAGCGCAGAGCGCGGCGGACGCACCGGGACGAGCGGCCGCGGGGGCACGAGACAGGCGGCGGGCGCCGGCACCTCGAGCGCGCCAGCGGCAGCGGACGCGGACGGCGCACGCAGAGGGCGGCAACGAAGAGCGACGAGCCGGCGCAGCGCCAGGCAGGGCACGACACCGGGACACCACACGAGACGCAGCGATGACTAGAGAACAGCAGGAGCCGGAGGGACGGCGGAGCCCAGGCAACGAAACGCGCAGGAGCACGGCGGGGCGCAGCCGGCGGGGCAGCAGCACGGAAGACGACAGCGAGACAGTGAGACAGAGCACGACTAGGAGGCCGCGCGTCGAGGCACGAGCCGGCACCAGGGAGCCAGGCGCGGCGCGACGACGCAGCGGCAGGCGCGCAGACGACGAGAAGAAAAGCAGGAGCACGAGAGGAGGGACGAGACCAAGCGACCGCGTACGCAGCACGGCCGAAGCACGGGCCACGCCAGAGGCGGCGGGGAGAGCACCGAGCAGGCGAGCGAGGGGGGCGACC | |||||||||
gi|58667037|gb|CK055723.1|CK055723 61088rsicek_4369.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica Gr TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): GCACGAGGGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCT | |||||||||
gi|44673103|gb|CR286537.1|CR286537 CR286537 Oryza sativa library (Han B) Oryza sativa cDNA clone y809d09p5, mRNA sequence TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): TTGGAGTGGCATGTCGGGGTGAACGCGCCGGGCTATGGCGGCGGGGTTCTCGGCGTTCTGAAGGAGGAGGAGAGTAAGCTGATGAAGGGCCATGGTGGTGGTGGGTACATGAAGGGCAAGGGGAAGGTGAGGATGGCCGATGTCGTGGAGGCCGCTAGCCTCGCGTCGAGCGGGCAGCCGTTCGAGGTGGCGTACTACCCGAGGGCTAGCACCCCGGAGTTTGTCGTGAAGGCCGCGTCGGTGCAGGGCGCAATGAGGATCCAGTGGTGCTCCGGGGATGAGGTTCAAGATGGGTTTCGAGACAGAGGATTCATCAAGGATTAGCTGGTTTATGGGGACAATATCTTCTGTTCAGGTTGCTGATCCCAACAGATGGCCGAATTCGCCGTGGAGACTTCTTCAGGTGACATGGGATGAACCGGACCTGTTGCAGAATGTGAAATGTGTCAGCCCATGGCTTGTGGAGCTTGTGTCAAGTATTCCACCAATCCATTTAGGACCATTTTCGTCACCTCGAAAGAAGTTGCGGGTTCCCCCACATCCTGACTTCCCATTTGAGGGTCATCTTCTGAACCCAATTTTCCATGGGAACCCACTTGGTCCTAGCAACAGCCCACTATGCTGTTACCCGGACAACGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTTTACAATAACAGAACACAGCTTAACAGCTGCCCTTGGTCTGTACATAG | |||||||||
gi|58666683|gb|CK055369.1|CK055369 59519rsicek_15769.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): CGGCACGAGGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGCCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGATCTCCACCTTAACAAACTGCAGTCGAGTCTATCGCCCCACGGGCTTCACCAGCTTGATCACGGCATGCAGCCGAGGATCGCCGCTGGTCTAATTATCGGTCATCCGGCTGCTCGGGATGATATCTCATGCTTGTTGACCATTGGTAGCCCCCAGAACAACAAGAAATCAGATGCCAAGAAGGCGCCAGCCCAGCTGATGCTTTTCG | |||||||||
gi|218502476|gb|FG960215.1|FG960215 MA_PA64s_08026 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): TAGGTTTCGATCTCGCCCCCGGACGGCTTCCCCATCCCTTCACTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCAGGCGCCAGCCCGCAAGAGATCCCGGCCGGACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGCAAATTGAAGCCTTGCACCAAGTTTATCAGCACTATCGGATGCCCTTTTGGCGAGGGTTGTCATTTCTCGCACTTTGTCCCTGGTGGGTATCAAGCAGATAGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGTGGTCGATATGGAGGCCG | |||||||||
gi|41882789|gb|BX928093.1|BX928093 BX928093 Oryza sativa library (Han B) Oryza sativa cDNA clone y619f08p5, mRNA sequence TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): GGAATTCGGCCATTATGGCCGGGGGAGGGGCGGCGGCCAGGGGCAAGGTCAGAGCCCGTGTCCGGCCAGAGGAGGTCGTCGAGGCGGCAATCTCGCCGTGAGCGGGCAACCATTCGAGGTCGTCTACTACCCGAGGGCGAGCACGCCGGAGTTCTGCGTGAAGGCCGGGGCGGTCAGAGCGGCGATGCGGACGCAGTGGTTCGCCGGCATGAGGTTCAAGATGGCATTCGAGACGGAGGACTCATCAAGGATCAGCTGGTTCATGGGCACTGTATCGGCCGTGCAGGTTGCTGACCCCATTAGATGGCCTAATTCACCATGGAGGCTTCTTCAGGTTTCATGGGATGAACCGGACTTGTTACAGAATGTGAAGAGGGTGAGCCCATGGTTGGTTGAGCTTGTGTCAAACATGCCGGNCATCCACCTTGCTCCATTCTCGCCTCCACGGAAGAAGCTTTGCGTGCCGTTGTACCCCGAGCTTCCCATCGACGGCCAATTTCCGACACCGATGTTCCATGGAAACCCGCTCGCCCGTGGGGTTGGTCCTATGTGCTATTTCCCGGATGGCACTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGTATATCTTTATCAGAATCTCAACTTAAGAAACTGCAGGCGAGTCTATCGGCCCAGGGGGTTTACAGATTGATCAGGGATGGAGCGAAGATTGAGATGGGTAATACGGGAAACGGGGGCGGGGAGAATTAAGGAGAGAG | |||||||||
gi|58659214|gb|CK047894.1|CK047894 49608rsiceh_20361.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): CGGCACGAGGGCGGAGGACGTCGTCGAGGCGGCGAGGCTGGCGAGCGGCGGGCAGCCGTTCGAGGTCGTGTACTACCCGCGCGCCAGCACGCCGGAGTTCTGCGTGCGCGCGGCGGCGGTCCGCGCGGCGATGCGGGTGCAGTGGTGCCCCGGGATGCGGTTCAAGATGGCGTTCGAGACCGAGGACTCCTCCCGGATCAGCTGGTTCATGGGCACCGTCGCCAGCGTCCAGGTCGCCGACCCCATCCGTTGGCCGCAGTCGCCGTGGCGGCTTCTCCAGGTGACCTGGGACGAACCGGACCTCCTCCAGAACGTGAAGCGGGTGAGCCCATGGCTGGTCGAGCTGGTGTCGAGCATGCCGGCCATCCACCTCTCGTCCTTCTCGCCGCCGCGCAAGAAGCCCCGGATTCCGGCGTACCCGGAGTTCCCCTTCGAGGGGCAGCTCCTCAACCCGGCGTTCCCGCCAAACCCGCTGGCACACGGGCACCACCATTACCATCACAANCACCCGTCCTTCTTCCCGTTCCCCGACGTTAGTGCTCCTGCAGGCATACAGGGAGCCAGGCATGCGCAATTTGGTCCATCTTTATCAGATCTC | |||||||||
gi|117210622|gb|CT863588.1|CT863588 CT863588 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): GCATGCAGGCAGGCATCTTGTCTTATTGCTTTTCTTCTCGCTACCCCCCCCCCCCCTCTCTCTCTCTCTTGCCTTTCGCACCATTGCCAGCAGCAACTAGCTACTACTGCAGCCTGCAGGCCCCTCCTCCTCTTGCTGCTGTGCTGCCTTGAGCGTTTATTGCGTGAATGCTCTTTCTGTTGCTGCAATTCATTTCATAGCCCATATGATGATCTCTGCTCCTCCAACCTAGCTGTGTATAACTCCCATAGAATCAGCAGCTAGCCCACATGTTTAGATCAGCTGTTGCAGTGAGCCAGTGAGTAAGTAGTGCTATCACTCTCACCATCTCGATCCATCGATCAACCCAACTAAAGAGTAACGAGAGCTACGACGACCGTGTGGATGGATCGTGGCTTCAACGAGATGATCTTGAGCGAGAGCGTGTGGAATGGCGGCGGCGGCCGAGGCCGCGGAAATGGAGATGGGGGGGCGGTGGTGCTGCCCCCCGAAGTGGGTGGTGTCAATGCCGTGGACGGGAGCGGCATGACGATGCTGGAAAAGCTGGGGGTCCACCAAGCCCTGGGGGCCGCAAAATTTAAGATTGAAGGGAACCCAAGCCCCCGGGGTGCCGGCGGGCGGCAGGTTGGAAAAAGGGGAGGAGGGGGGCCCCCCCCCCCAAAAAGCCGGGAGAAACACCGGGCCTCCAAAAACCCGGGGGGGGGCCCCCCTTTCCCCAGCCAAAAAGGGCAAACAGGGGGATACCCCCCCCCCCTTAATCTTAAAAAACATTTAAACCCCCGAAAATGTTTCTTGGTGAACTCAAAAAGGAGGGGGAAAATAACATACCCACATCTCCCCCACACAACAAAAAAAGGGCCGCGCAAATAAGGGGGGGGAAATATGGGTTGTTTTGCGCCAAAAAAATATAAAAAAAAAAACCCTCCCCCCCCCACAAAACAAAAACCAAACCCCGGGGCGCGGGTTTCCTCACTCTGGTTTGAAGGTAGGGGGGGCTTTGTTGTTTTTTTACCACACCACAAACACCACACCCACCCCACACCCCACCACCACCACAACCACCCAAAGAAGTATTTGATTTTTCTGCTATAAAACACAACAACCCAACACCCACCCCACCCACCCCCCCCCCCCCCCTCCCCCCCTCCCTCATCCTTGTTTTTTTATTATTTTATATAAGTGAGGGCAGACGGTGGGGTGGGGTGGAGGGCGCGGCTGCGGGGAGCCGGGCAGCCGCCTCCCCCAACTATACAGTTCAAGAAGGTTGTAGGATGATATAGAAAGAGAAGACAAAGAGAGAGAGACAAAGACAGGATAGA | |||||||||
gi|117246194|gb|CT848502.1|CT848502 CT848502 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): ATCCTCTCCCCTCACTCACTCACTCTCTCTCTTTCTTTCCTTAACTCTCTCTCTCCTCTCCACTCCTCCTCAGGCGGCGGTGGCGGGAGCTGGCGGCGCTCGGCAGCCTCGGGCTCTGGCCTGGAGCTGGCGGTGCCGGGGACGGCTCGGCCTGGAGCTAGCGGCGGCGGGGGCGACGCCACGGGCGGCCGTGCTTCCAGGCCAGTCGAGAAAGCCGTCACTACCTCACCCACACCCACTGTTCTTGGCCATAGCTGCCTACTCCCATGGTCTCCTCGTCCTTGCCCTTGTGCTCGATCGATCACCAGCCGAGCTGATTTTTCTCTTCTGCTTGATCTCTACCTCTGACATGCATCTGAAGACCGGAGAGCATCTGCATCTGCCTATATCATCCGGTCATGGATATGGATAGATGACCGGCCTGTTCATGTCTGAAGAAAAATCAAAGGTTTGGTTTTGATCGGCTTGAGAGCGTGCCTGGCTCCCTGCATGCCACTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTGGCGTGCAAGGAGCCAAGCATGCGTGCCATGATCTCTCTTTCTGCCTTAATTCAGTTTCAGACATGTGTAGTTGGATTTGTTTCCTCTAGGTGTTCATGTTAATTACATATTTCATGTTGATTTTGCCCGTTTGGATATGTGTTTGTCTGCTTGGTTTCGAATTGTTTTAGCAGGGGGGCAGAACTAATCAAGGATACTGCAAATCGTTGGAATTAATTTCTTGTTCAATCTTGATCCAGATAACTATGAGAGCTTTTAATCACAACGAGAAAAGCTAAAACCAAAATGCGGGACTGATGATCAGCATGGAGAGCAGCCTCAATTTATTTGTAGACGCTCAAGATCTGTCAGAAGTAATACTGCCACAATGAGGATGTTTTATGGTTATATAGGCTAAAATATATATGAGTAATATTCCATGCATGTCTATCAGCATTGTAACTAGCTATACAGGATAAAAATTCACAAAAATTCATACAGAATCTCTCTTCGATATATCCCCTACTAGCAGATAGCTGAACCCTGAATAGAGCTTTGCAAGGTTGCAGTTAGCAGGTACAAGGCTCTGAAAGGAAAAAAACGAATCCTTTCCAAAAATGCATTTGCCTGATAAATATGACACAAGGACACAGTTTTGGGAGGCGCCGGTAAAAAGTGGTCACTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|66926772|gb|CX113620.1|CX113620 EI083A10 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGCCTGGCTCCCTGTATGCCG EST sequence (targeted fragment marked with yellow): CACAGCTGCTCTGTGTGCCACTGATTGGCTGGCCAGCGTGGTGCTGGCCACTGATTGTGCTTGCCAGCAGCTTGTGCGTGCCAGCGGTTGGCTCTATCCATCCGTCGTCCGTCGCGCTCACTCACACGCGTCCATCATACTCAACACAGCAAGCCAGCAACTCAGCAGCACACACACACATCACGCACTGCATTCGTCTATCGTCCGACACCCAACTGCCCTGGTGTTCAATCCTGGCATGGTGCTCCAACCTGCATCTGGCACAGGTGTGCTGTGGTGCATCTGTGCTGTGTGATGTGCGTGCACGTGGCAGGCAGGGAGCCATGCGATCGCAATTGCCCGTCTGACCTCCCCACCGCCCTGCCCCCAATGTTATGGCTGCGCAGCTGTGATGCGTCAACTGGACTCGCCCCGAGAGATCGTCCTCGTGCTGAACAGACTCTGCCGGAAACATCCTGGGTATACCAGTACAAAGCAAGACCAGGGAGTGCCAGTGGATACATATGTTTGGCATGGGTACTCGTTCAAACCACAAATACAACCATGATCAACAAAAGCAGAACACCATGGGTGGACGAGGTTAAGTACGGTATTAAATGCTATCGACGGAACAGTACAACACAGGCTATCACAGATAAACAAATCATTAGAAGACATGATGAGACAGTATGTGAAACTTATACAGATCAGAGCGCAAGCTGCGCAAGGTCAGGAGACAGCCACAGAAGGCAGAGGGAAGCAGAAATGGTGATGTGTGCTATGCAAGGGAATGGAATTAGTAATAGAGTAAGAATAACTGTACGGTTATG | |||||||||