| mature miRNA: TGCCTGGCTCCTTGTATGCCA species: Ocimum basilicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87055059|gb|DY325376.1|DY325376 OB_EEa07M07.f OB_EEa Ocimum basilicum cDNA clone OB_EEa07M07 5', mRNA sequence TGCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): CCGTTTTGCATCATTACTTTGTTCAAGAATATATTATGGTATACTTAATTAAGTAGTAGTTTTCAGGCCGGCGTTGGTTCTGTTTTGAAGGTATGTTTGTGTGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATGCGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCATGCATGCTTTCGCATTGTCTCCACACCTACTCTCATTTTCAGGCTTTTCTCCTCAGTTACTACATATGAAACTTCATCATTTCGTAGTTCAATCATCTGTTTCGTGCCTCGTCCAAATCAAAGGTAATTAATAAAATAATTTTTTCCTTAGTTTACAATCCAATCCTTGCTACAAATGTATAGTAGCTTTTATAAATGGCCGTACCTTTGGATTCTTCCGACCTATAAATTGTTTCAATGTTTAATAATAAG | |||||||||
gi|87060222|gb|DY330539.1|DY330539 OB_MEa0005K22.r OB_MEa Ocimum basilicum cDNA clone OB_MEa0005K22 3', mRNA sequence TGCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): TTGAAACCATTGGAAAATGTAACCAAATCTTGTGATAAACTTGTCCATACATGTCTGTTTCAAATAATCTGTGATACAGATATCTCATTATTAACATTGAAACAATTTATAGGTCGGAAGAATCCAAAGGTACGGCCATTTATAAAAGCTACTATACATTTGTAGCAAGGATTGGATTGTAAACTAAGGAAAAAATTATTTTATTAATTACCTTTGATTTGGACGAGGCACGAAACAGATGATTGAACTACGAAATGATGAAGTTTCATATGTAGTAACTGAGGAGAAAAGCCTGAAAATGAGAGTAGGTGTGGAGACAATGCGAAAGCATGCATGCATGGCTCCGAGCATGCCATCCACGAAGGCTGGCCGCGCATGGATAGACTCCACGAATGGCATACAAGGAGCCAGGCACACAAACATACCTTCAAAACAGAACCAAAACTACTACTTAATTAAGTATACCATAATATATTCTTGAACAAAGTAATGATGCAAAACATTTAAACTGGGTCTACTCTCCGTCTCCGGCCAGCACTTATTTATAGGAAAAATGGCGCAAATGAATTCCTTTTCCAATGCCCTGCCCTGCAGTAGCTTTTGAGTTGGAAACAGTTTATAATAATATATATAATTAGGTAGCTAAGACAATTCACCTGAACATCATTTCCAAGGCTCCTCCATTTCTATAATGTTTCTTTTTTGTCAGAACATAGAAAAGCTTGATGATGATGATGCCAGGTATAAGGGGGGGCCTCCTCGAATCTCCTCTTCTCTAGTTTCATGTCTTTTCCCCCCTACCGCAAACCAATTTCTTGTTATTAATTATATTCGGGAGTTCTTCAAAACACATAAATTTTCTGAAA | |||||||||
gi|87069090|gb|DY339407.1|DY339407 OB_SEa10B09.f OB_SEa Ocimum basilicum cDNA clone OB_SEa10B09 5', mRNA sequence TGCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): TGAAANTAGAGAAGAGGAGATTCCAGGAGGCCCCCCTTTATACCTGGCATCATCATCATCAAGCTTTTCTACATGTTCTGACAAAAAAGAAACATTATAGAAATGGAGAAGCGTTGGAAATGATGTTCAGGTGAATTGTCTTAGCTACCTAATTATATTATTATAAACTGTTTCCAACTCAAAAGCTACTGCAGGGCAGGGCATTGGAAAAGGAATTCATTTGCTAATGGTTGCCCCAGCAGCCAGCAGGTAAAACTAGTTAAACAAACCATATACTATTTTTTTCCTATAAATAAGTGCTGGCCGGAGAGTATAGCCAGTTTAAATGTTTTGCATCATTAGTTTGTTCAAGAATATATTATGGTATACTTAAGTAGTAGTTTTCAGTGTTTTGAAGGTATGTTTGTGTGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATACGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCATGCATGCTTTCGCATTGTCTCTACACCTACTCTCGCTTTGAGGCTTTTCTCCTCAGTTAATACATATGAAAGTTCATCATTTCGTTGTTCAATCATCTGTTTCGTGTCTCCTCCAAATCAAAGGTAATTAGTAAAATAACTTAT | |||||||||
gi|87055060|gb|DY325377.1|DY325377 OB_EEa07M07.r OB_EEa Ocimum basilicum cDNA clone OB_EEa07M07 3', mRNA sequence TGCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): GCACGAGGGTTTTGCATCATTACTTTGTTCAAGAATATATTATGGTATACTTAATTAAGTAGTAGTTTTCAGGCCGGCGTTGGTTCTGTTTTGAAGGTATGTTTGTGTGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATGCGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCATGCATGCTTTCGCATTGTCTCCACCCCTACTCTCATTTTCAGGCTTTTCTCCTCAGTTACTACATATGAAACTTCATCATTTCGTAGTTCAATCATCTGTTTCGTGCCTCGTCCAAATCAAAGGTAATTAATAAAATAATTTTTTCCTTAGTTTACAATCCAATCCTTGCTACAAATGTATAGAGGCTTTTATAAATGGCCGTACCTTTGGAT | |||||||||
gi|87068369|gb|DY338686.1|DY338686 OB_SEa08M09.r OB_SEa Ocimum basilicum cDNA clone OB_SEa08M09 3', mRNA sequence TGCCTGGCTCCTTGTATGCCA EST sequence (targeted fragment marked with yellow): CGAATATAATTAATAACAAGAAATTGGTTTGCGGTAGGGGGGAAAAGACATGAAACTAGAGAAGAGGAGATTCGAGGAGGCCCCCCCTTATACCTGGCATCATCATCATCAAGCTTTTCTATGTTCTGACAAAAAAGAAACATTATAGAAATGGAGGAGCCTTGGAAATGATGTTCAGGGCAGGGCAGGGCATTGGAAAAGGAATTCATTTGCGCCATTTTTCCTATAAATAAGTGCTGGCCGGAGACGGAGAGTAGACCCAGTTTAAATGTTTTGCATCATTACTTTGTTCAAGAATATATTATGGTATACTTAATTAAGTAGTAGTTTTCAGGCCGGCGTTGGTTCTGTTTTGAAGGTATGTTTGTGTGCCTGGCTCCTTGTATGCCATTCGTGGAGTCTATCCATGGGCGGCCAGCCTTCGTGGATGGCATGCTCGGAGCCATGCATGCATGCTTTCGCATTGTTTCCACACCTACTCTCATTTTCAGGCTTTTCTCCTCAGTTACTACATATGAAACTTCATCATTTTGTAGTTCAATCATCTGTTTTGTGCCTCGTCCAAATCAAAGGTAATTAATAAAATAATTTTTTCCTTAGTTTACAATCCAATCCTTGCTACAAATGTATAGTAGCTTTTATAAATGGCGGTACCTTTGGATTCTTCCGACCTATAAATTGTTTCTATAATGGTAATAAGATATCTGTATCACAGATTATTG | |||||||||