| mature miRNA: TGCGATTCTCCTTTGGCAGGA species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164372485|gb|DB948630.1|DB948630 DB948630 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_031_L1 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): AATCTGCTTTGCCAAAGGAGAATTGCCCTGCCATTTCTAATATCATACATTTATCAAATGCAGTTTATTAACTATTCAACTTAACCTCTTTATCCATGCCATTAATGGGATTTCTTTTCTTTCTTTCATCATTTGGCAGGTAATTGCTTATGTCAGTGTTTTGAAGAGCACAAAGGATCAGCAAGTCAGTGGGATATTGATCCATGCTTGAAGAATCTATTGATGTGGAGCTGGATGATTATAAGCACTTGATTGATCCGCCAAACAGCAACTTTTCTTCAAAATCATCTCATTAATTATTATTTCCTTTTTGAATGTCGAAATTCAGAACTTTTATATTGGGTCTGAATCTTCAACGGCCTTTGTAGCATGCAATAATTTGCCCTTCGTTGAAACCCATTAACATTTTTACTC | |||||||||
gi|164407026|gb|DB929717.1|DB929717 DB929717 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_027_M2 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): GGGCGTGCATGGTCGAGGAATGGCAGGCGACTCTCCCTTGGCAAACGGATGATGATCACTATTCACCATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCCTGCCATTTCTAATATCATACATTTATCAAATGCAGTTTATTAACTATTCAACTTAACCTCTTTATCCATGCCATTAATGGGATTTCTTTTCTTTCTTTCATCATTTGGCAGGTAATTGCTTATGTCAGTGTTTTGAAGAGCACAAAGGATCAGCAAGTCAGTGGGATATTGATCCATGCTTGAAGAACTATTGATGTGGAGCTGGATGATTATA | |||||||||
gi|164391942|gb|DB955199.1|DB955199 DB955199 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_052_C0 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): GGTGGCGTGCATGGTCGAGGAATGGCAGGCGCTTCTACCTTGGCAAACGGATGATGATCAATATTAAACATGCAAATTAATGCATAATCTGCTTTGCCAAAGGAGAATTGCCCTGCCATTTCTAATATCATACATTTATCAAATGCAGTTTATTAACTATTCAACTTAACCTCTTTATCCATGCCATTAATGGGATTTCTTTTCTTTCTTTCATCATTTGGCAGGTAATTGCTTATGTCAGTGTTTTGAAGAGCACAAAGGATCAGCAAGTCAGTGGGATATTGATCCATGCTTGAAGAATCTATTGATGTGGAGCTGGATGATTATAAGCACTTGATTGATCCGCCAAACAGCAACTTTTCTTCAAAATCATCTCATTAATTATTATTTCCTTTTTGAATGTCGAAATTCAGAACTTTTATATTGGGTCTGAATCTTCTGCGGCCTTTGTAGCATGCAATAATTTGCCCTTCGTTGAAACCCATTAACATTTTTACTC | |||||||||
gi|164394469|gb|DB945966.1|DB945966 DB945966 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_023_D1 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): GGCGTTGGAGTTTGTTGTGATTTTGGTATGCTGCTACTGGGAGACGAAGAGAACTGATAGCGGCCAAAGGGTTAGTAATCCTCTCTCTTCCTAGATGATTGTTCATTTCATTGATAAAATTGCATCGACTCCTCAATACTGCCCTTCAAATTCAACTTCAACTTTTGGGCATATAAGAATCTAGAAATTGCAAAAACCATTTCATTAGAGTTTACTAAAACTTCCATGTAGCTAGGGTTTCCCTAATTAAATATTCCAGCTGTATCTATGATCTGCCTGCGAGTAAGATATCCTGGAAATGTGTCTGCTTCAAGTTGCCTCTTCAACCAGAACCATCAGTGCCTTGGGCAGTTGAACATGGCATGCATTTACGAGACAATTGTGTAATTAGTAGTGTAGTTGAATAACAGGGCAATTCTCCTTTGGCAGCTATCAGTTTAGCAGACTGGTTAACAGCAGAATACCAAATTCCTGCCAAAGGAGAATCGCACTGATATTCTTCACTACCCTCTAGGAGTA | |||||||||
gi|164403565|gb|DB947384.1|DB947384 DB947384 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_027_M2 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): CACGGGCGTGCATGGTCGAGGAATGGCAGGCGACTCTCCCTTGGCAAACGGATGATGATCCTACATAGGCATGCAAATTAATGCATAAACTGCTTTGCCAAAGGAGAATTGCCCTGCCATTTCTAATATCATACATTTATCAAATGTAGATGATTAACTATTCAACTGCGGATCTTTATCCATGCCATTAATGGGATTTCTTTTCTTTCTTTCATCATTTGGCAGGTAATTGCTTATGTCAGTGTTTTGAAGAGCACAAAGGATCAGCAAGTCAGTGGGATATTGATCCATGCTTGAAGAATCTATTGATGTGGAGCTGGATGATTATAAGCACTTGATTGATCCGCCAAACAGCAACTTTTCTTCAAAATCATCTCATTAATTATTATTTCCTTTTTGAATGTCGAAATTCAGAACTTTTATATTGGGTCTGAATCTTCAACGGCCTTTGTAGCATGCAATAATTTGCCCTTCGTTGAAACCCATTAACATTTTTACTCAAATATTTCAGGATTATGC | |||||||||
gi|164384062|gb|DB927059.1|DB927059 DB927059 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_020_H0 TGCGATTCTCCTTTGGCAGGA EST sequence (targeted fragment marked with yellow): GGGTCATTTTAGGCAGAGACCCAGTGTGAGAAGAAAGCACAGCAGCTATTGGGTTGGGTTTCAGCTTTTAGCTTTGGGATTCGATCCACATTCGTCACATCGAAAAGATTGATCTTCGAAAAGCTTAGTGAGAACAGATGCAAACAGCTGAGCAGAAAGTGGAAAGTTTTTGAATAAAGTGGAGAATTTCAGGAGACGCGCTCTGTGCCTAACAACTATTCCTTACCTAAACTTGATTCTTTGATCCATTCACCTTTGAAGTCAAAGGACAAGGAGATTAAAGCTATCATCACAATCTCATCATAAGATCATCCTATGGCATTTAAGATTGTTGTATAGCACATCAGAAGTTTTATTCACTTGTAATATTGTGAAGAACTGTGACGTAACCTTTGGGCATTATGCATGTCTGGTCCTGTGACCATTGCTGATAATGTTGAAAGGATACTAACTTCTGTGGATAGAACAAAATCTGTTGACATCATCTCTGATAGAGACCATTTATCCATACCGATCAATGGTGAAGCTACCCATGCTTCTTCTGAAGCTGCTTCCTTTAGAGTTGGGGAGCTCATTCTTCCCAACGGGGAATCGTATTCTGGGTCGTTGCTTGGTAATGTACC | |||||||||