| mature miRNA: TGCGGTTCAATAAAGCTGTGG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109877820|gb|DW506793.1|DW506793 GH_TMIRS_107_D10_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): GGCTAAAGTCCTACTGAATCACTTGTGAAGGATTTGGTTGTATATGAAGTGGGTTCTAAGAGCTTTATTGAACCGAACCGACGAGGAAGCAAGAGGAACATTTTACAAAGACTCGATTCCGATGCGCAAAAGTTGGCTAACCTTCAAATAACCGTACAGGATCTAAAGAAGAATGTCGAGATAACCGAGAAAGGGAAAAAGGGGAAAGGAATTGATTATGGTACAGTCTAAGAGCACCTAGAATAAGCTGAGGAAGCCGTCTCGAAACTTGTTGATGCCGATCGCAAATTAATGACGCAAGTTGAAGATGGTTCTCGATACCCTGATGGGAAATCACCATCATAATCTGATGAGAGTGGTAGTGTTATGAAACGAAGAGTATCAGAACAAGCTCAAGGAGGGTCTGAGAAGATCGGGCGGTTGCAGTTAGAGGTACAGAAACTACAGTTTCTCTTACTGCAGCTCGATGATGAAGAAGGAAACAGAGGACAAGCCCGAGTCACTGATCAGAATAGACGAGTTATATTGCGGGACTATCTTTACAGTGGGGTAAGAAACATGCAGAAGAAGAAGAAAGCACCCTTTTGTGCATGTGTTAAACCCGCAACTAAAGGAGATTGAACAATGGTTCATATCAGTAGAGAGAATTTAATTGCATTGTCCATAAATATATACCTTTCTAGTTTTGTTGTTTCACATATTTCTTTTGTTACAGAGGCTTCGTTCTATACTTCATAGATTCTACTGTATATTTCAGGCACCATCTAATAGAAACTAATTGCACTTT | |||||||||
gi|164335348|gb|ES849293.1|ES849293 UFL_671_82 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): CAAGAAACAAGCCTATTTCTATATTTCTATCCAAAATCAGTGTCTCATTTCCTTGAGATGGGTTCAGCAATAAAACATTTCGTGGAGTTAGTTGAACAAGCAGGAACTGTTTTTGAAGTTGCAAACACTATACGGGGTTTAGTTGAAAACCATTGGGAATTCCCTAAAGGCATTGATCAGAATGTAAATAATCTGAAGAGAAAAAGAGATGAACTAAATGGTCAGAAAGAAGACGTTGAATCAAGAATAAAATCAGAGCTGCGTCCGAGAAAGAAGGTCAAGAAAGAAGTTGATCTGTGGATTGAAAATGTAAAAAGGATAAATGGGGAAATTCCTAATCTCGAATCCAAAGTTAGAGGTAGCAGCTTTTTCCCTCGTGGATTTCTTGTTAAGAATGTTCGTAAGAAGGAAGAAGAAGTTGAAGAATTGCTTGAAAAGGGTAGATTTTCTGATGATTTGGTTGTCAACGATCTTTCGTGGATTGGTCAGGTGTTGCCAACACCGAGCTTAGTCGTTGAAACAATAAAATGTAAAAAGAATGAGATTATGCAACACTTGAGGAATGACGAGGTTCAAAAGATTGGAGTTTATGGAATGCCAGGAGTTGGGAAAACAAGTGTTGTCACGCTTGTCAACAATGAACTCTTAAAAGGTGAAATCGAGTTCAGGATCATAGTATGGGTCACTGTAGCGAGGAACTGTAGTGTTATTGAACTGCAGAATAAGATTGCAAAGGCAATGAATGTCAGTATTTTCCAAAGAAGAAGACGAGACTTTAAGAACAAGGAATGTTTGTCTGAAAATTTTGAAGTGGAAA | |||||||||
gi|109858930|gb|DW487909.1|DW487909 GH_RMIRS_066_E05_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAAGGTGGGAAATGTAGCATAGGAGAAGTAATGCTGGGAGTTGAACAATATGTTCCCCAAAATACACAAGCTGAATCAAATGCTTTGCACCTCCTGCATTAATGATTGCCTTGGAGTGATCAAGGTGTAGATAGTTGTCCGTGCAAGCAAACTTGGCGAGTGCAATTGCAGCCTCCTTGGAAACTTCGGCTTCCCTTTCGTCAAGAAGTTTGACCAAAGGGGCAATCATCCTTGTTTCCGTAGCTCTAAACGTCCTAGCCAAATTTCCGATAGCCTTGATACAAGGAATCAGCAGCTCTGAATCAGCCTGCTCAGTGATCTTCAACAGCTGGTCCACGATGAGCTTACAAGCATGAGAGTTGGGCTTGAAAACAGACCTTCTCAAATCAGGATCCTGCTCTGCCACAGCTGTAATCTCCATCAATGCCATAGCTGAATTAAACCGCACTTCTTCAGTTCCTTTTTCAAGCAAAACAGCAAAACATAGCAATGCTCTGGACTCAGTTATACTCTTGCAGATAAGCGAATTCTCCTTTGCAAGATGCCATAAAGCTCTAGCTGCCATTGCTTTCATAGAAGACTTGGTTGCAGGATCTTCCGATTCCCCTCCCTTCGTACTCGCCCCTGTAATCAGACCATTCTGGTGATACTGATAACTGAGCTGGTGAGCTTGCTTGGCGATGACATTGCCCTGACTATTACTCCTAACATGGTTATTACTAGGCTTTTGTGGCAATTTCGCCCCTCCTTGCATTGCCATAGTATTTCTAACAACATGATGCATCTGATTCGGCTCTCGGTTCCCCATTGGGTGCGGAATCTG | |||||||||
gi|109879600|gb|DW508570.1|DW508570 GH_TMIRS_125_H04_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): GAGCATACGAATACTTGGATAAGATCACCGGACAACTTGTTCAAGGCATTTTAGATGCTGGAAAAAAGACAGGACACGCAATCTGTGGGGGGTATATCAATGGGATGTTTGGATTTTTCTTCACAGAAGGACCTGTTTACAACTTTGACGATGCAAAGAAGAGTGATACGGCAAAATTTGCCAGGTTTTATAGGGGAATGCTGGAGGAAGGTGTATACTTGGCACCTTCACAGTTCGAAGCTGGATTTACAAGCTTGGCACATACTCAGGAAGACATCCAAAAGACCATTGCAGCAGCTGAGAAAGTTCTTAGCAAGATTTAAGGTACTTTGTCCAATCCTGTTCTCACTTTCCTATTGAATGATTAGCCATTTAGCTAGGGAATCAATGGTTCTTTTGTTGTCAGCTTTTCAGATTAAGATTTGTGGTCATTGCCTCTTACTTTAGAGTCTGTATTTCTCATGAAACTTTGTATCGATGCTAATGTATGAGATAATTATCGGCTTTTAAAGCTTGTTTACAACCTCAGCTTTATTGAACTGCGATGCGTGAAAGTTGAAAAAGCTTTCATTGCCTACATGAAAAGGCCTTTTATTAGTAATAGATTG | |||||||||
gi|164280255|gb|ES828509.1|ES828509 UFL_311_45 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): GGCACGAGAATTCCCAAAGCCACCCTCACATTTATGTTTTCAACACCATGATCAAGGGGATGACACTCTGCAACTCCGCCTTTGAGGCTCTCCTTGTTTATAAAAGCATTGGGCGGGTCGGGTTGCGACCCGACTGTTACTCTTTCCCGTTCGCGTTGAAGGCGGTTGTTGATCTTCGGGCAATGAGTTTGGGTACCCAGATTCACTCACAAGCCATATGTGCGGGGCTCGAATCCAATGTTCACGTGGTTTCGGCTCTCATTCAAATGTATTCCTCGTGCGCGCGCATTTCGGATGCTCGCAAGGTGTTTGATGAAATGCCTCTCGCCTCTGTTTGTTCAGATGATGTTGTGGTTTGGATGGCAATGATTGCTGGGTATGTCAAGGTTGGGGATCCAGACACTGCCATGGATTTATTGAGCCGTATGCCTCGAACTCAAACCGATGGTGCGGTACTTATTACTTGGACATCAGTGATTGCAGGGTATGCTCAAATGGACCGTCCCGACGAAGCCATCGCTGTGTTTCGCAAAATGCAGTTGGAGAATGTAGTGCCTGATGAAATAGCAATGTTGGCTGTGCTCTCCGCTTGTGCGCAGTTGGGTGCTTTTCATATTCGATTGGGAGAATGCATTCATGGCTACGTTAAAAAACGTGGGTTTGATCAAATGGTTACCCTTAAAAATGCACTAATTGNAATGTATTCGAATTCANGCAATATAAGCAATGCTTTGCCTGTGTTCGTGAATATGACCCGTAGAACTGTTATATCTTGGACTACCATCATATCAGCACTTGCATTCCATGGACTTGGCACACAAGCTCTCGACATGTTCTCTCGGATGGAAATGGCTCAAGTTAAACCGAATGATATCACTTTCATCGCAGTCCTCTCTGCTTGTGCTCATGGTAGGATTGGTGAACTTGGGTCGATAGTATTTCCCTGCTATGAAATACAGGTACGGGAATCAACACGAGATTCAGCACTATGGGTGTATGATCGATTTTACTGGGTCGAAGCGGGTATCTAGCAGAGGCACTCAAACTAGGTAGTGAGATGCCGTTTTCAGCCAAATGCAACTTATATGGGGGGTCTCTTTCTTGCTGCCCTTTAAAAATTCTTGGGGGAAGCCTAAACTGGGAAAAAATTTATCTTTTTCTCCCCTTTTGGGTAAAAATTGTGGACACCCTTGAGAAATAAGGGGGGGAACAAAATTGCACCTTTTTTTTTCCCCCAAAAAAATAATTTGTCTTTTTTCCCCTCTGGCGGGAGAAGGGGG | |||||||||
gi|78339571|gb|DT559845.1|DT559845 EST1070485 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): CAATTTCAAGATCCAACTAACGCTATTTTGTTACAGCTATATCTCTATTGAATCGCATCTTAGAGTGCTTGACCGCGCCTCAAAATCTTCCAATATATACCAAAGCTCGCCTCACTGAAGCCCAATTTTCTCCTGTAAAATTGCTTGTTGCGGCGTCCGCCCATTTAGTAGTAAAAATTTGGCCTTCGAGTTCCCTGTAGTTACCTGAGTTGCCACTGTGGTGGATTTGTGGCGACGATTAGATGGAGGCTGGGGTAACGACGACGGCGACTACAACAGCGTCGTTCAGTTCGATACTTGATAAACCCCTCAGCCAACTAACCGAAGAAGACATTTCTCAACTCACTCGCGAAGACTGTCGCAAATTCCTCAAAGAAAAAGGAATGCGTAGGCCGTCATGGAACAAATCGCAGGCGATCCAGCAAGTGATTTCGTTCAAGGCGTTGTTGGAAAGCAACGAAGATTCCGGCGCCGGAGCTCGCCGGAAAATCCTTGTTTGTCCACCACCGTCACATTTTCCTCCGCAAAATGCGGTGGCGCGTCTTATTTCACTCTTATTTCTTCTTAAGCCACTTTTCTGGGTTCTGTTTGCTTCACTTTGTTATTTGGATAAATGGATAATGATCTTGGAATGCTCTGTTTAGGTAGCTTCCAATTCTGGTGAGTCAGTAAAAGAAGCAGTCTTTGGAGAAGAAGAAAGCCTGTACGGCCAAAAAGATCTTTCTTTGAAAGCTGCTCCGGTGGTGCAGATGAATTGTCAGGGCGGTGACACGGATGACAAGACTCTTTCGCCTAGTTTAGGCTCTC | |||||||||
gi|109878783|gb|DW507753.1|DW507753 GH_TMIRS_117_C12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGCGGTTCAATAAAGCTGTGG EST sequence (targeted fragment marked with yellow): GAACATACGAATACTTGGATAAGATCACCGGACAACTTGTTCAAGGCATTTTAGATGCTGGAAAAAAGACAGGACACGCAATCTGTGGGGGGTATATCAATGGGATGTTTGGATTTTTCTTCACAGAAGGGCCTGTTTACAACTTTGACGATGCAAAGAAGAGTGATACGGCAAAATTTGCCAGGTTTTATAGGGGAATGCTGGAGGAAGGTGTATACTTGGCACCTTCACAGTTCGAAGCTGGATTTACAAGCTTGGCACATACTCAGGAAGACATCCAAAAGACCATTGCAGCAGCTGAGAAAGTTCTTAGCAAGATTTAAGGTACTTTGTCCAATCCTGTTCTCACTTTCCTATTGAATGATTAGCCATTTAGCTAGGGAATCAATGGTTCTTTTGTTGTCAGCTTTTCAGATTAAGATTTGTGGTCATTGCCTCTTACTTTAGAGTCTGTATTTCTCATGAAACTTTGTATCGATGCTAATGTATGAGATAATTATCGGCTTTTAAAGCTTGTTTACAACCTCAGCTTTATTGAACTGCAATGCGTGAAAGTTGAAAAAGCTTTCATTGCCTC | |||||||||