| mature miRNA: TGCTGTTGGAGCATCATCAAG species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164334835|gb|ES814046.1|ES814046 UFL_254_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GGCACGAGGAGTCTTTGTCAAGGGAATCATTATCAGTATGATACCCTAAGGCGGGCCAAACATTCCTCAATGATGGTTCTTTACCATCTGCACAATCCAACTGCCCCTGCATTTGTCACAACCTGTAATGTATGCCATCTGGACATTGAAACTGGTCAAGGCTGGCGCTGTGAAGTGTGCCCTGATTATGATGTGTGCAACTCCTGTTACTACAAGGATGGGGGCATTGATCATCCTCATAAGTTAACGAATCATCCATCCTTGGCTGAACGTGATGCACAAAATAAAGAGGCTAGGCAACTACGGGTTGTGCAGCTGAGGAAAATGCTTGACCTTTTGGTTCATGCATCACAATGTCGTTCTGCACATTGCCAATACCCAAATTGTCGGAAAGTGAAGGGGCTTTTCCGCCATGGAATACAATGCAAAAAACGTGCTTCTGGTGGTTGTGTACTTTGCAAGAAAATGTGGTATCTACTACAACTTCATGCTCGAGCATGCAAAGAATCTGAATGCCATGTACCACGTTGCAGAGATCTTAAGGAACATTTGAGGAGGCTTCAACAGCAGTCTGATTCTCGGCGAAGGGCTGCTGTGATGGAGATGATGAGACAAAGAGCAGCAGAGGTTGCTGGTAACTCTGCGTAACTAAAACCAAATTGTAAATATAAATTTGGATTTTGATGAAAATGGTCTCTCCTAGAAAGGCAGGTAGAAAATAGTTTTTGTGCTGCTCCATTGGTTCACTTCTTGCAACTAGGCCTGATGGGGAAAGCCGGTGGATCTCTAGAAGCTCAGAANGGTATATGGGCATAGAAAACTACAAACAGATTGATTAGTGATGGCTTCTTAGCGCACAATTCTTTCATTCATAAAACACGTGACCAGATTCCCTAAACCAAGTTGATGAAGTTTTATAGATCTGATCAGCCTGCAACAGTTGCTTACTATGCCGCCTTGCCCTGCCTCGCCTCTCCTTGAACTCAAATATAGATGTGTGTCAATGCCCCAATCTGGTTATTAATTTTTAATTTTTTATTTTTTTGAATTCATTTGCATCCCCTTTGGGTGGGGAAAAGTGGTTAATAATTTTTTCTAAATCTTGTCCAAAAATTTCTTCCTTAAAAAAAAAAAAGTTTGGAATTTTAGGGGAACCTTAAATTTTTAAAAATCATTTTTTTTTTTTTTTGTGGGTGTTTTTTTTCCCTTTTTTTTTTTTTTTTGTGAAAAAAATTAAAACACCCCCCCTTTCTTTTTTTTATAAAAAAGGGGTTTTTCTTTTTTTTTTTTTTTTTATTATAAATAAAAAAAA | |||||||||
gi|164243632|gb|ES792399.1|ES792399 UFL_601_67 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GGCACGAGGAATTATTGGCTCTGAGAAGAGACAACTGGGACACAGTTCCACCACAAATGAATGACATTTTCTCTAATGCCTTCGACTTCGATTGCTTTGATGATGCTTCAGCAGCTGCCAGTTTTCTTCCTCAGTCTTTCTGCCAAGATTTCTCACTGCCGTTGGAGCAAGATTTAAGTTTCAACTTCAATGAAGCCTACGGATCATTTGGCGATGAATTCTCTGCAGCGCCACAAATGACTGATACATCGAGTAACACGTTCGATACACCGCCGTTCCCGGTTCAAGACGATCATCATCACTGGATGAATATGGTGGAGGAAGAAGAATGGGGGACCCTTGTAGATGAACTCAACATGTTGGATCCACAAGCACCCGCTTGCAAAGTAGAGCCTATTCGATCACCCGAAGCACCGGTTTTCAACGTTGGCAGCTGCAGTGTAGACCGCAGCAATCGAGCCAAGAGATTAAAGGGTCAGCCATCGAAGAATCTAATGGCCGAGAGAAGGAGACGAAAGCGGCTAAATGACCGCCTTTCGATGTTACGATCAATTGTTCCTAAGATAAGCAAGATGGATAGGACATCCATACTTGTAGATACCATAGATTACACGAAGGAGCTCCTTGAGAGGATCAAGAGTTTGCAGCAAGAAATGGAAGCAGGTCCAAATGAGTTAAACATGTCTCACATTTTCAAAGATGTAAAACCAAATGAAATATTGGTGAGAAAGACACCAAAGTTCGAAGTGGAAAGGAGAAATGTGGATACGAGGGTTGAGATTTGTTGCACGGGGAAACCCAGGATTGTTGTTGTCGACACTAACGACGTTGGAAGCATTAGGCCTTGATATTCAACAATGTGTTATTAGCTGTTTCAATGATTTTGCAATGCAAGCATCTTGCTCAGAGGACTTGGAACAGAGAACATTGATAAGTTCTGAANGACATAAGGCAACGTTGTTTAAGAATGCTGGATATGCAGGAAGATGTTTGTAGGACCAAAACTGAATGACTACAAAAAAACAATTTTCTATGGATTATTATTATTATTATTAATATTTTTGGGGGTCCAAATTTCCCGGGTTTTAATTTCAAAAAAGAGACTTTTGGAATTTGGTTGGGATTTGGTTAATAAAATTTTGCCCCCCTTATAAAGGGGGGGATGTTTTTTTAAAATAGAAAAATTTTTTTAATAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAAAAGAGAGAATTTCTTTAAAAGAGGGGCGCGCCGGGGGGGCCCCCCCCCCGAAATTTTCTCCCCCCCGCGGGGGGGGGGGGG | |||||||||
gi|164281739|gb|ES825503.1|ES825503 UFL_336_85 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAG-CATCATCAAG EST sequence (targeted fragment marked with yellow): GCAGGTCGACCTAGTGGATCAAGATTCGGCACGAGCCAAAAACCCTTCTCTCTCTTTCTCACTAAAGGAATGTTTGAAACTAACAACATTTTTGAAATGAAGATAAAGATCTGAGAGTGTGAGAGAGGAAGTGAAAATGAGTGGGGCGAGACTATGCACATTACTTGCGGATTTGGGATACGAAGGGGCAGAGAAATTGGACCCCGATAGCTTCGAATGGCCTTTCCAATACGACGACACCCGCACCATTCTTGACTGGATCTGCTCCTCCCTCTGCCCTTCCAATGTCCTCTCCCTCTCTCAACTCTCCCTGTATGAGCAAATCGTACAAGAAGGGAAGCTGTTGGAGGGGGAAGACTTGGACTTTGCTTATGATAGCATTTCGGCCTTCTCGTCGAGGAGGGACAACCAGGAGGCGGTTTTTGGAGCTGAAGAAGGATTGAAAGATATTAGGGATGCAACTGTAGCATATAAAGCTGAAGCTTTAGAGCTACAGAAACAACTTAGGCATTTGCAGTCTCAGTTTGACATGCTTACAGGTCAGGCTTCAGCTTTGATCCAAGGCAGACGAGCACGGGTTGCAGCAACATCTGCTGCTAATGGACACCTTACAACCATAGATGATAGTCTCTCGGGAAGGAACTTGCAGATGAACGAAGTTCTTGGGAAAATAGCATCTACAGCACAAGAGCTGGCGCATTACCATTCTGGAGATGAGGAAGGCATCTACTTAGCTTATTCTGACTTCCATCCGTACTTGGGTGAGATTCATCCTGCATAATGGAGTAAACCAGTGGTTTGCTAAGCACTAAACACGGTTCCTTTTCCATTAGTTGCTGAAGAGGGTAAATCAAAATGCTCCTGGGTTAGTCTTGATGATGTCTCCAACAGCTTATAAAGAACAGATCTAGAAAAGTTCTATCATCAACGTGTATCTGAATTGCAAAGGCTTCCCTCCTATTCGGAACAGGTGAAGAACATGGGTAGAGCCCCGTTGAGAATGCCAAGCAACAAGCCATCTCATGGTGCTTAAATCTCAATATCATCCAATGAAGCTCATTTTCCTCTTGATCTTCTTTCCCTTAAAAAAAACCTGCTGAATTTGGGGGGGAAGGTTTAAACCCTTTTTCTCAAAAAAAAAAAAATTTTTTATTGGAAAAATTTTCCAAAACTTTTGTGTGGGGGCGCGGGGGCCCCCCCCCCGGAAAACCACCCCATTTTTTGCGGGGGGGGATTTTTTTATATTTTAAAAGGGTTTTATGGGGGCGGGCAGAGAGATTTTTTT | |||||||||
gi|164280290|gb|ES832316.1|ES832316 UFL_342_87 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GGCACGAGGGAGCTCATTGCATTACTCTTGATAAGCTATATGTTGCAGAGCAGAAGCTTTACAAGCAAGTAAAGGTAAGAGTGATACCTAGCCTGGTCATTTGATTAAAACTTGAATAAATTATAATGTGCTATTGATTGTGATTTTGGTGGCAATGTCAGAATCTTTTAATGCATACATCGGTAGTGTGTATATTGAATATTTTATGACCATGCTTTGCCTAGGTTTCTGTTTCATTTTGACTTCTGTATGAGTCTTATTCTAATGTGATGATGTTTGTAGGAGGAAGAAGTTACCAAATTGGAGCTTGAAAAGAAATTGATGTTGCTCCAAAAGCAAGATGAAAACCGTGACTGGACGAAGACTCAGAAAATCAAATCAAGTGTTGAGAATCTGGAGAATGACATGACACGCTTGCAACATTCAATAAGTACAGCCTGTTCATCTATATTGGAGCTCATTGATGAGGAGCTTTACCCACAACTGGTTGCATTAACTTCGGGGTAAGATCTGTTTGCTATGCTACATGAGTACATATTTAGATTTCTTTAACCGGTTCGGTGATACGCAGAGGCATAGTTAGGGGAGAAGGCAGGGGCTTTGACCCCCTGGTTAAATGGGGTCTCTTACCATTATTCATAGTACAGTTTTAGTCCTTTTTAAGTAAAATTTTTAACTTTGTAACCCCCACCCCCACCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164255974|gb|ES846381.1|ES846381 UFL_132_74 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GTGGTTCTCTTCCTTTCATGGTGTTTAATTCATGTTGACTACTAAAAAACCAGTGTACAAGTTGTGTTTATGGTTTAGTATGGGGAGAGATGGACAAAGAAACTAATAACCAAGAAAACCCATCTCTCCTCTCTAACAATAACACCAACAAAGAAGACTGTTCCCCTAAGAAACACCCTGGAAGCTCCACTGTGACTGGCGGCGGAGGCGGGAGTAATGATAGGCTGAAACGCGATGAATGGAGTGAAGGGGCTGTTTCGAGCTTACTCGAGGCCTATGAAAACAAATGGGTGCTTAGAAACAGAGCCAAGCTTAAAGGCCATGATTGGGAAGACGTTGCACGTTATGTTTCGGCTCGAGCCAATTGTACCAAGTCGCCCAAGACTCAAACGCAGTGTAAGAACAAGATCGAGGCCATGAAAAAACGGTATCGGTCGGAATCGGCCACGGCGGAGGGATCGTCTTGGCCTTTATATCCACGGCTTGATCTTTTATTACGTGGAAATGCTGCCGCTGCCGCTGCTGCTGCTGCACCGTCTCCTCCACCATCACTGCCGCTGCCTCCGCCACCGCAGCAGCTACATCTGTCAACAAGTGTTCAACCACCACCACCTGGCCCCTCTTTTCACTAACCTTCCCTTGACGTTACCAGAAGCGTCCACGCTTGTTGAGGCTCCAACAACAACCACAACCACCACCACCGCCACTACCACCACCTGCTCCCGCCGCCTGGCTAAACTCCCCCAGGTCTGGGAACATGCAACAATTTCCCCGGTTCCCCATGGTTTTGAAAAAAAACCCAAAGAAGAACGAACGCGGAACAAAACATCGAACCATCTAACGGGACAAGGAGCCCATAAAACCCGAAAAGAGTTCCTCCGGGGCCTTGACAATCCACAGGA | |||||||||
gi|164317866|gb|ES821302.1|ES821302 UFL_432_78 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GGCACGAGGTGATGATGCTGCTATAACCCCTGTTAAAAAGAGATGGTATAAGACGAAAAGAAAGACCACTGACAAAGGTGTTCTTGGCTGGTTAAAACACAGTACATATCTCCACTTAGTATGGAATCAACAAAGCAGTCTTTGACTGAAAAGCAAGCAAAAGAACTGCGAGAACTTAAGGGAGGCCGCAATCTTTTGGTGAACCTTAACAACAGGGAAAGGCAAATCAAAGAAATTGAGGCATCATTTGAGGCATCCAAATTACGTCCTGTCCATGCAACCAATAAAAACTTGGAGCCTGTTGAAGTTATGCCCCTCTTACCCGATTTTGAACGGTACGATGACCAGTTCGTTATGGTGGCATTTGATAATGCTCCTACAGCTGACTCAGAAATCTTCAGCAAGCTGCATGGCTCTGTACGTGATGAACATGAATCGAGGGCCATTATGAAAAGTTATCAGGCATCGAGCTCAGATCCTGCTAATCCTGAGAAATTTTTAGCATACATGGTGCCGTCTCTTGGTGAGCTATCAAAGGATATGTATGACGAACACGAAGACATCACATATTCTTNGGGTTCGAGGATACCATTGGGATGTACGTGGCGACGATGCATATGAACCAACGACATACCTTGTTTCGTTCGATGAAGGAGAAGCTCGCTATGTGCCTCTTCCCACGAAGCTTAATTTAAGAAAAAGAGGGCAGAGAGGGAAGATCAGGTGATGAGATTGAACATTTTCCTGTACCTGCTAGAATTACTGTGACGAGAAGACCACAGTTGC | |||||||||
gi|164329509|gb|ES813254.1|ES813254 UFL_203_56 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGCTGTTGGAGCATCATCAAG EST sequence (targeted fragment marked with yellow): GGCACGAGGAAGGAGCTCCCTATGTGCTTGATGCAGCTCTGACAGCATGTGCGCATGGAAGACTTTTGCCCCGTGACCTGGCAACAGGACTCAAAGATCTTGCTGATCTCCTTCCGGCTACCCTGGCAACCATTGTCAGCTACTTATCTGCTGAAGTAACACGAGGTATATGGAAGCCAGTTTTTATGAATGGAACAGATTGGCCGAGTCCCTCAGCAAATTTATTCATGGTTGAGCAACAAATCAAAAAAATTATAGCTGCTACTGGTGTTGATGTCCCAAGCCTTGCCATAGGGGGGAGCTCTCCAGCCATGCTTCCTCTGCCCTTGGCTGCCCTTGTTAGCCTCACTATAACCTATAAACTTGATAAAGCTTCTGAACGTTTCATTGTGTTAATTGGCCCAGCATTGAGTTCGCTAGCTGAAAGTTGTCCCTGGCCATGCATGCCCATCATAGCCTCTTTATGGGCTCAGAAGGTTAAGCGTTGGAGTGATTTCCTTGTGTTCTCTGCTTCTCGTACCGTCTTCCACCACAACATTGATGCTGTAGTCCAACTTCTCAGGAGTTGCTTCACATTGATCCCTGGATTAAGCCCCTCTACCATTTACAGCAATGGTGGAGTTGGTGCACTCCTCGGCCATGGATTTGGCTCCCATTTCTCTGGGGGAATGTCTGCAGTTGCCCCAGGGATTCTGTACTTACGAGTGCATCGATCAGTCAGAAATATCATGTTTATGACAGAAGAAATCGTCTCTCTTTTAATGTCTTCTGTAAGAGATATTGCCAATAGTGGGTTATTCAGGGAGAATTTGGAGAAACTGAAAAAGGCGAAGTTTGGATTGAGATATAGACAAGTTTCTCTTGGTGCAGCAAACACACAAGTCCGACTTGCTGCATCACTTGGGGCATCATTGGTTTGGCTATC | |||||||||