| mature miRNA: TGGACCTCGCGGCCCTGGAGG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7593434|gb|AW707685.1|AW707685 832011G01.y1 C. reinhardtii CC-125 nutrient replete, -S, -Fe, Lambda Zap II Chlamydomonas rein TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGCTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGGGGCATGCGCTTAAAAAGCGCCGGCAAAGGCCTTGGGGGC | |||||||||
gi|6545262|gb|AV391046.1|AV391046 AV391046 Chlamydomonas reinhardtii C9 Chlamydomonas reinhardtii cDNA clone CM068f08_r 5', mRNA TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): GGCGACTTACGAAGCAGTGGTGCTGATGAGCAGTTCGGGGAATTGATGCTTCACGTTTGCCCTTGGCTCGCATCGATGCGTGTTAGTGCGCGCGTAAATAATGCATACCCCTACGCACCACCCGTTTCACTATGCAAAATCAAGCTGGATACTGCTGGCATTCTCCCGGCGCTGCCGCCCGTGCTGGCCCCTGTTGGCGCGCTGCGGAGCCCTCCGCAGTCTCCCCGAGTGCCGCTGCTGCATCCGCACATTGTCGCCCAGAAACAAACCACGGACACAGACACAGGGCGCTCGCGTGTCGCATTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGCTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGCTCCTCCAGGCCGCGAGGGCCAGGCGTGGCTGCGCTTAAAAGCGCG | |||||||||
gi|12253942|gb|BF863798.1|BF863798 963046G02.y1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TCCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGGTGGCGCAGACCCTGAACCCCAAGCTCATTATTGAGCGCCGCAACTCGATCCGCCGCCAGGCCTCGCGCACCGGCTCTGACGGCACCGGCAGCTCAGATAGCCCCAGGGCACTTGGCGTGCCAAAGGTCATCACAGCGTAATGACCTCGCCAAATCCTATTCACAATAACGTGTACGGGGCGTGGGGTATGGTGATGATGATTTNTTAATAATTGAATTATTAAATNATAAAATAAAAAATATTTTTTTNANACCCTCCCCACACCACCCCCCCGAGGGCAGCAGGCTGTACCTTCTCCCACGTTCATATACACTCCTTCCCCCCCCTCATGGACCCCCTTCAACAAAACCACACCCATCATCTACTCATCACACCCCAAACACACTCCAACCCACCCCCGCCCCCAAGCACCCCCCCCTCCCCTTCCCTCTCATACACCCACGCATACAATTTCGACGCGATCTTTCCCCTCCACGTTACATGAAACTAAAAATATAAATAAATAAATCCAAAAACGGATACGAGCCAAACACCCCTCCCTTTACTCCCACTCAACCTTGGCCCTCTTATATTTTTATACCCTTTTTCCTTTAATCAGATATGTTCCTTACCGCCCGGGCCGCGAGGGCCGAGGCCGCCGCCCCCCCACCCCCCCACCCCACAAAAAG | |||||||||
gi|22076290|gb|BQ825066.1|BQ825066 1030123G09.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGCTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTAGAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGCGGCCTCGAAGCCGGCAGCGGCCTCGAAGCCACCGGCGGCGGCGGCGCCGTCGTAGCCAGCGGCCTCGGGGGCGGGCGCGGCGGCCTCACCCCAGTTCTCAGCGGCACCCACGGGGGCGGGCAGGGCGTAGCCCTCCGCCTCGAAGGTCTCCTCCTCGCCGGCCTCCTTGGCCTCCTCGGGCTCCCTGTAGAAGAACAGGTCCACGGGGACGGACCAGGGGTTGGTCACGTTGATCTGGTCACGCATCTCCAGCACCATGCGCGCCAGCAGGAAGTACAGCACACCAATGGAGTGCTTGCCCTTGTTGTTGGCGGGGATAGCCACGTCCACG | |||||||||
gi|16071743|gb|BI873739.1|BI873739 963110H04.x1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCAATTTACAGCTCTCTTTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGGGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAAAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGTTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTAAAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGGCGGCCTCGAAGCCGGCAGCGGCCTCGAAGCCACCGGCGGCGGCGGCGCCGTCGTAGCCAGCGGCCTCGGGGGCGGGCGCGGCGGCCTCACCCCAGTTCTCAGCGGCACCCACGGGGGCGGGCAGGGCGTAGCCCTCCGCCTCGAAGGTCTCCTCCTCGCCGGCCTCCTTGGCCTCCTCGGGCTCCCTGTAGAAGAACAGGTCCACGGGGACGGACCAGGGGTTGAGCACGTTGATCTGGTCACGCATTTCCAGCACCATGCGCGCCAGCAGGAAGTACAGCACACCAATG | |||||||||
gi|22048667|gb|BQ808316.1|BQ808316 1030003C09.x2 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCAATTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGTTGCTGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGGCTCCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTATAAA | |||||||||
gi|22061343|gb|BQ814187.1|BQ814187 1030041G05.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGTTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGTCTTCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTAGAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGCGGCCTCGAAGCCGGCAGCGGCCTCGAAGCCACCGGCGGCGGCGGCGCCGTTGTAGCCAGCGGCCTCGGGGGCGGGCGCGGCGGCCTCACCCCAGTTCTCAGCGGCACCCACGGGGGCGGGCAGGGCGTAGCCCTCCGCCTAGAAGGTTTCCT | |||||||||
gi|22072491|gb|BQ821829.1|BQ821829 1030095E01.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): CTATAGGGTCGATTGGGTACCGGGCCCCCCCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTAGAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGCGGCCTCGAAGCCGGCAGCGGCCTCGAAGCCACCGGCGGCGGCGGCGCCGTCGTAGCCAGCGGCCTCGGGGGCGGGCGCGGCGGCCTCACCCCAGTTCTCAGCGGCACCCACGGGGGCGGGCAGGGCGTAGCCCTCCGCCTCGAAGGTCTCCTCCTCGCCGGCCTCCTTGGCCTCCTCGGGCTCCCTGTAGAAGAACAGGTCCACGGGGACGGACCAGGG | |||||||||
gi|161810380|gb|FC098236.1|FC098236 CACW25851.rev CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): GGGCCAGCGACAATTGCCGTTCCTCGGTCCGCCAGACCTACCTGGACTCTGTGCGGGTGTCGTTCTCGTGGTCCACTAGCAAGCAGGGCACCACTTTCAAGTTGCCCAACCTGGCCATCAAGTCATCCGACGTGCCCGCCCAGGGCCGCGAGGTTTGCATGGAGGTGGTGGCTAGCTCCAAGTGCCCCACCCTGCAGACATTCTGCCAATACCACCCTCGGGCGCCGGGGTGGGTCTATTCGGTCTTCTCCAAAGACGCCAAGCAGGCGTGGTGCCCCAGCACCAGTTTCCCCAGCGCATAAGCAGCAGTTCCTAGCAGGTTGGGTAAATTTTGTACCAGGTAGAACAGACACTACCTGTCGAACGTCAATGCTGTTGTGAATGGTTGGTAGGAGTGAGTGAAGTACTGAGGGTGCGGTAGAAGAAGTATTGTGGATGGGCATGTGGTGTGGTGGGCGCAGGGTGACACCCCGTACTGGGTATTAATGAAGGGTAGCATACGCTGGTTGTGCGGACGGTATTTTAGCTCCTGTTAGAGCCGACGTCCCTGGCAGTGATTCATAGATTGCTGGTCGGCAAACCCCCTAGCTTTCGCAGG | |||||||||
gi|15369509|gb|BI528935.1|BI528935 1024094F09.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGTTGCTCCAGCGCCGCTGCAGCCCCACAGGGCGGGGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGGGGCATGCGCTTAAAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGAGGCCTCAAAGCCGGCAGCGGCCTCCAAGCCACCGGCGGCG | |||||||||
gi|9210522|gb|BE337437.1|BE337437 894045H09.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGAAAGCGGGCAAACCTTACATACGCTAGACCAGATCCATTGGCATGATCTGACCCCTTGGTTGGGGAGGCCGCAAAAACCCTGCTTCCTGTTGCCTCCACTCAGCTTGCGGAACTCCACGCCGAACTGGGCACCTCCCTCTCATGTTCGTCGCCTCCAGTTGAAGCCGCCCACCTCCCCGGTTTTCCTGGCACCCTGCCTACTCGCTGCCCCTTGCCGCCGCGTGCTGGCGGACATAAGGGGTCCGCACCCACCCATCCACCCACAAACACATGGCCACACCAGTTATCTGCCCTAATGCCAGTGCCACCACAACCCCCGCAGCTGTTCACAGGTCTCCCATTTTCCACCGTTCCCCATCCTTAACGCGCGCCGGCGCCGGTTCCGCCGCCGTTGCCGCCGCCACCACCACTACCGGGGGCGCGGGGTCCAGCTGCCAGCGCATCCGTATGGGGCGATCCC | |||||||||
gi|161810381|gb|FC098237.1|FC098237 CACW25851.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cD TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): GCTGACGGGCCCCTGCGCCGAGCCGGGCTCCTTCTGCTGCCAACAGGACCTGCGCAAGATTGAGTTCTGGGCCAGCGACAACTGCCGCTCCTCGGTCCGCCAGACCTACCTGGACTCTGTGCCGGTGTCGTTCTCGTGGTCCACTAGCAAGCAGGGCACCACCTTCAAGCTGCCCAACCTGGCCATCAAGTCATCCGACGTGCCCGCCCAGGGCCGCGAGGTCTGCATCGAGCTGGTGGCTAGCTCCAAGTGCCCCACCCTGCAGACCTTCTGCCACTACCACCCTCGCGCGCCCGGCTGCGTCTACTCGGTCTTCTCCAACGACGCCAAGCAGGCGTGCTGCCCCAGCACCAGCTTCCCCAGCGCATAAGCAGCAGTTCCTAGCAGGCTGCGTAAATTTTGTACCAGGTAGAACAGACACTACCTGTCGAACGTCAATGCTGTTGTGAATGGTTGGTAGGAGTGAGTGAAGTACTGAGGGTGCGGTAGAAGAAGTATTGTGGATGGGCATGTGGTGTGGTGGGCGCAGGGTGACACCCCGTACTGCGTATTAATGAAGGGTAGCATACGCTGGTTGTGCGGACGGTATTTTAGCTCCTGTTAGAGCCGACGTCCCTGGCAGTGATTCATAGATTGCTTGTCGGCAAACCCCCTAGCTTTCGCACGGCCAGACTGCAGCGCTCAAAGCGCAATAACGTACGGACACGCTGACCTGCCCACCTCCATACCAATGAGGCATAGGCTACGGTGTTATCCATTCGAAACTGTAACAATCTGTCACAA | |||||||||
gi|22063842|gb|BQ815451.1|BQ815451 1030050F04.x1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGGTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAGACGTGGCTCCAGGCGCGCCGCGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAGAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGTTGCAGCCCCACAGGGCGGGCGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGTGGCATGCGCTTAGAAAGCGCCGCCGAAGGCCTCCGGGG | |||||||||
gi|23367598|gb|BU655416.1|BU655416 1112119H12.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTCCCATCACATATGTCTTCACAATGCACTTGCGGCTGGAGCGCAGGACCAGTCCAAAATGCCGAACAGTCCCGGTTGCCGTCCGTCGACAAAAGCCAGGGAACGCGCTCGGCGCGTACCCGCACCCACAATTCCAAATTAAATAGCTTGCTCACACTCGCGCACATATTTCCGAAACGCAGGCGCCCGCGCTTGCTCGCTCGGCGCACCCCTGACCCTCGGTTCTGAAACGCCTGCACGCTTTTCCACCGTTTGCCGCTTTTCGTGCCTTCGCCGTTCCGCCTCCGCCCCACCCCACTACGCTATCACCGTGCGGGGCTCTGCAGGAAGCGCATGATCTGCTCCCACAGCCCGGGCGCTAACCGCTGCGCCGTCTCCGTCATAGCCAGCAGCATGGACGCCTCCACGCCGGCGCGGCCGTTGCTGGTGGCGCCGCACACCTGGCCGGCCCGGTTCACCGTCACGTGCAGGGCGCTGGAGCTGCAGCGCTCCTCCGGCGCCGCCAGGTCCACCACACACTGAGAGCCCACCTGTGCCACAAGTGAC | |||||||||
gi|16429827|gb|BI995069.1|BI995069 1031019C06.x2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTCATCACATATGTCTTCACAATGCACTGCGGTTGGAGCGCAGGACCAGTCCAAAATGCCGAACAGTCCCGGTTGCCGTCCGTCGACAAAAGCCAGGGAACGCGCTCGGCGCGTACCCGCACCCACAATTCCAAATTAAATAGTTTGCTCACACTCGCGCACATTTTTCCGAAACGCAGGCGCCCGCGCTTGTTCGTTCGGCGCACCCCTGACCCTCGGTTTTGAAACGCCTGCACGCTTTTCCACCGTTTGCCGTTTTTTGTGCCTTCGCCGTTCCGCCTCCGCCCCACCCCATTACGTTTTCACCGTGCGGGGCTTTGCAGGAAGCGCATGATCTGTTCCCACAGCCCGGGCGCTAACCGTTGCGCCGTTTCCGTCATAGCCAGCAGCTTGGACGCCTCCACGCCGGCGCGGCCGTTGTTGGTGGCGCCGCACACCTGGCCGGCCCGGTTAACCGCCACTTGCAGGGCGCTGGAGCTGCAGCGTTCCTCCGGCGCCGCCAGGTCCACCACACACTGAGAGCCCACCTGTGCCACAGTGACCACCAGCGGTACCCGGGACACGTCCA | |||||||||
gi|8514140|gb|BE122035.1|BE122035 894016G06.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGGACCTCGCGGCCCTGGAGG EST sequence (targeted fragment marked with yellow): TTTTTTGGCTTTTCACTTTACAGCTCTCTCTCCCGGACTCCACCAGGCACCTCCCGTTCTCCACCAAACGTGGCTCCAGGCGCGCCGGGGCCCGCCTCCTACGCCCTTGGCCTCAGGCCGCTGCAGCACAAAGCACCGCGCGCTGCTGCTGCTCCAGCGCCGCTGCAGCCCCACAGGGCGGCGAGCTCGAGGACGGGGACCGCCTCCTCCAGGGCCGCGAGGGCCCAGGCCGGGGCATGCGCTTAAAAAGCGCCGCCGAAGGCCTCGGGGGCGACGTAGCCAGCCACCGGGGGGGCGGCGGCCTCGAAGCCGGCAGCGGCCTCGAAGCCACCGGCGGCGGCGGCGCCGTCGTAGCCAGCGGCCTCGGGGGCGGGCGCGGCGGCCTCACCCCAGTTCTCAGCGGCACCCACGGGGGCGGGCAGGGCGTAACCCTCCGCCTCGAAGGTCTCCTCCTCGCCGGCCTCCTTGGCCTCCTCGGGCTCCCT | |||||||||