| mature miRNA: TGGAGAAGCAGGACACGTGAG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|75738960|gb|DR831423.2|DR831423 MM19 Sorghum bicolor greenbug-responsive cDNA library Sorghum bicolor cDNA 5', mRNA sequence TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): ACCTCAAACACCAGTCACCACACAAGTGTCCTGCTTCCCCAAGTCCGAAACCACCAACAAGAAAGAGGCGCTAGCCTAGCTCCTGAAAGCAAGCACCTGCCATTACGCCGTTCTAAAAGGAGCGAATGCAGGCCGCACCAC | |||||||||
gi|12691527|gb|BG157961.1|BG157961 OV1_15_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): GCACGAGGGCGGCACACGTGACCTGCTTCTCCGACGCACTGGAGGGCCACCAGTTCTTCAACCAGCAGCAGACGCCGCCAGAAGCCGACGCCACGGACCACCTCGGCCTCGCCGCCTCCTCGCCGTTCCTGCTGTCCGGCTTCGCGCATTACGGGCCGCTGCACCACGGCGCGACGAGCCTGGTGCAGCTCCTGGAGGGCAGCGTCGTGTACGCTGCCGCCGGCGGTGGCGGCCTCCCGGACATGTCCAACAAGCAGCAACAGGAGCCCGTGCCGGCGCCGACGTGCAAGGTGGGCGGCGAGCGGGAGCGGCTGAGCTTGTCGCAGGACACGGGGCTCACCTCCGACGTGAACCCCGAGATCTCCTCCTCCTCCGGCGCCCAACGGTTCGACCACGACCACCTCTGCTGGGGCTACTGATCGAGCCGCACATCATCGCGTACGTCATCGCTAGCGATTAGTATAGCACTGCTGGAAATAAGCACATCTACATCTGT | |||||||||
gi|30965151|gb|CD221717.1|CD221717 CCC1_70_A01.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_70_A01_A00 TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): ACTGGATTCCCTTGTCCTGCTTTTCCACAAATTGTAGCGCTTGTTGCTTTCCTGTTCAGGTGCCTTGTTCTTGGCCTCCTTCGCACGCAAAGAACCGCCGGCCATCTTCCTCTCCAGCATCACCCACTGCGCTCCAGCTCCTGGAAGGCTTCTTCTTGGCCGCCTCTGCCTGCTTTGCGGTTTCTTGCTCTGCTTTTGAGTAGAGTCGCAGCGGAGTGGACAGTGTGGAGTGGATCAGCGGTGAGGTGGAAGGCCTTGGTTTTGTTCTGGTTCTTTGGAGAACAAGGGGAAGACGAAGAGGAGCAGGAGGAGGATGGCGGGAGGAGGGGC | |||||||||
gi|57804517|gb|CX606720.1|CX606720 ANR1_4_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_4_C12_A002 5', mRNA sequen TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): CTCCACTCTCTCCCGGAAAAATCCATCCGTCCATAAAACCCAAAAAGTCTCATCAGGTTTAGTTGCAAAGCAGCGATCAAAAGCAGGCCTAGACGACGGCGATCCTCAGCTCAGTAGCCAGGCAGGAGATGGAGCACGACGTGCACCACCACCACCATCAGCAGCCGGAGGAGGCCATGGAGCTGCCGCCGGGGTTCCGATTCCACCCCACCGACGAGGAGCTCATCACGCACTACCTCGCCAGGAAGGCCGCCGACCCCCGCTTCGCCCCGCGCGCCGTCGGCGTGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCACCGGCACCACACGTGACCTGCTTCTCCAACACGCTGGAGGGCCACTTCCTGACCCCACCAACCTGCCTCCTCCCCTCCGCCGCCGCCACCGCCTCGCCGTTCCTGGCGAGCATGGCGCAGTACGACGGCGACGCGGGCGTGGGCGGCATGGTGCACGAGCTCCTGCAGGAGGCCGGCGGGTGGTACAGCAAGCTGGGCGAGAGGGAGCGGCTGAGCGGCGGCGCGTCGCAGGACACCGGCGTCACCTCGGAGGTGAACCCCGCCGAGATCTCCTCGACGCGGCACCACATGGATCACGAGGCCTCCTTTTGGGGCTTCTGATGAACTCCCCCGTCTTTTCCGTTATCGTTAAAAAATTGGATTAGAATTAGTCACTGGATTGGAAATGGAGATTGTATTGTGCTATTGAATGAATACTGTTATGTGCAAATGGGGCAAAAAAAAAAGTTGTGAACAAA | |||||||||
gi|8548585|gb|BE125995.1|BE125995 DG1_60_G12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): GCACGAGGAAGGAGCTCATCCTGTCCCCGACCCCGGCCATGCGCCGCATCCTCCTCTCGGGCCTCGGCATCCACTTCTTCCAGCAGGCGTCCGGCATCGACGCCGTGGTGCTCTACAGCCCGCGCGTGTTCAAGGCCGCCGGCATCACCAGCGACAACCAGCTCCTGGGCACCACCTGCGCGGTGGGCGTCACCAAGACGCTCTTCATCCTGGTGGCCACGTTCCTGCTCGACAGAGTCGGCCGGCGGCCGCTGCTCCTGAGCAGCGTGGGCGGCATGATCATCTCGCTGGTCGGCCTCGCCGCCGGGCTCACCGTCATTGAGCACCACCCGGACGGCAAGATCCCCTGGGCCATCGGTGTGGCCATCGCGTCCACCATGGCCTACGTGGCCTTCTTCTCCATCGGCATGGGCCCCATCACGTGGGTGTACAGCTCCGAGGTGTTCCCGCTGCACGTGCGCGCGCTCGGCTGCGCACTGGGCGTGGCCTCCAACCGCGTGACCAGCGGCGTGATCTCCATGACCTTCATCTCGCTGACCAAGGCCATCACCATCGGCGGCGCCTTCTTCCTCTACGCCGGCGTCGCGGTGCTC | |||||||||
gi|37756237|gb|CF771147.1|CF771147 DSBF1_14_F01.g1_A010 Drought-stressed before flowering Sorghum bicolor cDNA clone DSBF1_14_F0 TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): CAAATTTATCCTTAAATTTGGGTGTGACAGAGTGTGAATTCATACACAGCACCTCTATAGCAGCAAGCTCACAGTACCTCAAACACCAGTCACCACACAAGTGTCCTGCTTCCCCAAGTCCGAAACCACCAACAAGAAAGAGGCGCTAGCTAGCTCCTGAAAGCAAGCACCTGCCATTACGCCGTTCTAAAAGGAGCGAATGCAGGCCGCACCACACCTACACTATACACACCAAACCTCTGTATGTATACAGTATATACGTGCACATCGCCGGCCGGCACATGCACAGTGCACAGTCGATATAATGGCGCGCGCGCCTCCCTCAGAGCTCAGAAGAAACACGTGTCGAGGTAGCCGTCCGCCCGGCGGCGGCGGAACTCGAGCAGGCCGCCGTAGGTGCGGTCGGCGACGCTGA | |||||||||
gi|31377383|gb|CD462286.1|CD462286 SA1_40_E08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_40_E08_A00 TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): ATTGTGAATTGGCCAGTCGATGGATAGATACTCCCTTTCCCTGCGAAGTGTTCTACGACGGGTGGACTCTCTCGCCTGCTGATGGGCTAATGTCAAAGGCACGTGCAGCAGCAGTTGCCCGCCCTGGTTATGGGTGATCGTGGCGCACATGACCGGAGCCTCACTTTGGTGTGGCGTGAGCACGATGGACGGTGAACATGATGCGTTGCGCCGATCGGATTCGCCGTTCTTGTGAGAGCAGCTGGTGGTCAAAAGCCTGGAATTGATGGAATTATCCGATCAGATTGGGTGAGCCGGAGGGAGCCCAAAGTTTGCGCCGTCACAAATCCCAACCAATCGCCGAGCGAGGCCTCGAGCTGAGCTGCTTGTGTCGATTGTTAAATACTAGCTCGCCGCGTACGACACACCAAGCGGGCTGCGGGCGGCGACTCTCTCATCTGCTCTGCTTCTCCACTCCGCTCCGCCGGCAGCGCGGGCCATGGCGACGCCAGCGCCGGCGCCCTCCCTCCGCCTCCTCCTGCTGCTACCGCTGCTCACCGTCGCCGGCGCCGCGGTGTCTCACCCAGCGCACGAGTTCTGCGCAGTCGGGGGGTGACGCCGCCGGCTGCGGCGGCGGAGGGGACGGCACGAGGATCCTGATCAAGGGCGGGACGGTGGTGAACGCGCACCGCGCG | |||||||||
gi|45997075|gb|CN152765.1|CN152765 WOUND1_84_D05.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_84_D05_A002 3', mRNA s TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): GAACATGAAAGATATATTCAATTCTGAACTCAATTACAGATCAATTTGTGATCCCAGCAGGTCACTGAATATTTGAAAATGTAATACAGCATTTGAGAAAAATAAACAGGATATAATGTGATGAAGTTATTCTCCATCTTTCCTATACACTATGATAACCAACCTAATTAACTAACTTTTGAACAAGTATCAAACATGAAAATCTTGTGTAGCTGGTACCTAACCTACAGATGCCAACCCTACAAACCAGTTGCCCATCAACTCAGGAAACTACTGTTTACCCCAGCCCTGTACAGCTGCATGGACCTGGGCAACGAAGTGTAGAGCTTGACCTTGGTGTGAGCCGGCACAAAGAAAACGTCACCTTCCTTTGCCTTTGCGTTGTCAGTCATGAAGCCTGCCTGGATTTCTCCTTCTCCTGTCACGACGATGGGGTGTAACGAGTTACATAAGGCTGTACAGGCATGCCTTGCATAATTTCCGGGGAGGCCTGATTATAAGTCAACATCGAGCAGAGAGTTTGCACATCTCTGTATTTCGGAGTTAGACCTGCACGGACAACGTTGTCTGAAGTGGCCATACATTCGATGCACTCCCCTGAGAGATATGCATGAGGTTCGTTCGCACCGACATAAAGTGCTTCACCAGGATTGAGCTTAACAAAATTTAGGAAGAACGCTGCCAGAACACCGACATCTCCTGGGTACTGCTTCTCCAATGATAAAACAAGTTGCTCCTTCTTTGTTAAACTTCTAGCCTTACTCTCACTGTTCAAGCGAGTCTT | |||||||||
gi|9301608|gb|BE360051.1|BE360051 DG1_61_E03.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): GCACGAGGCGGCGACTCTCTCATCTGCTCTGCTTCTCCACTCCGCTCCGCCGGCAGCGCGGGCCATGGCGACGCCAGCGCCGGCGCCCTCCCTCCGCCTCCTCCTGCTGCTACCGCTGCTCACCGTCGCCGGCGCCGCGGTGTCTCACCCAGCGCACGAGTTCTGCGCAGACGGGGGTGACGCCGCCGGCTGCGGCGGCGGAGGGGACGGCACGAGGATCCTGATCAAGGGCGGGACGGTGGTGAACGCGCACCGCGCGGAGGAGGCCGACGTATACATCCAGGAC | |||||||||
gi|30971569|gb|CD228135.1|CD228135 CCC1_6_E06.b1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_6_E06_A007 TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): ATCACTGAACTTGATTGTAGCCAAAGGCGCCGGAAAACTATGACCTCAGTCCATATAACAATCTAAAATACAGGCCCAATGCAAGTCGGACCATACAACGATCTTGAGATCATATCGGTTGCTAGATCATCCAATGCTATCGTCTGGAGACCAGCAGACCCAAACACAAGCAAGTTAATTATTATGCCGCTGAACTGTGATGAAAGGCTTCCAATGCCCAAAGGCTACTGCGCAGTGGTAGCGGCACCCTCCGCGGCGGCTGCTGCCGGCTTCGGTGTCGGCACCACCACCATAACCACCTCCCTCACCGCCACCAAGCCCTCCGCCTCCGCCTAAGCCACCTCCAGCTCCACCACCGAGGCCGCCTCCGCCGCCTGCACCCCCACCAAAACCACCACCCTTCCCTCCTCCAAACCCAACTCCAAGCCCTCCACCGTGCCCAAGGCCACCACCAAGCCCAACACCACCGCCGCCGCCGCCGCCGTACCCTCCCCCACCACCAAGCCCGCAACCACCACCGCACAGGTTCTGCTTCTCCAAGGACCGCGCCTCGGCGGCCACCGCAAGAACCACCGCGACGGCCAGCCCCAGAAACGCCATGTTCCACACATCCCTCGGCGCCCTCCCCATGTCGT | |||||||||
gi|33110835|gb|CF074176.1|CF074176 FE1_21_H10.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_21_H10_A002 5', mR TGGAGAAGCAG-GACACGTGAG EST sequence (targeted fragment marked with yellow): AAAGGCAAGCTTTGAGAAACTCTAATCGCTGCTCCTCTTTTCTCCTCCTCCCCTGGCCGGCAAACCATACCAGCGCGTCTATACACGACAAACGCCAAGAGCTCACCGGCGACCTCGACTCTAACACCACCGAGACAAGTACACCTCACCGCCGACGACTCGACTTCAACACCACCCTCACAGTCTGCTTCGCCTATACCTCGATCTACTTTAACGAAGAACGAGCATCCTCACGTGTTACTGCTTCTTCGATCTGTGGTACCTCAACTTCATCGACACCACCATCACCGGCGACCTCGAGTACTTCGACACCGTCCTCACCGACGACCTCGACTTCTTCTTCGAAAACACTCTCTCGTTGGCGACCTCGACTTATTCTTGGATAACACCCTCGTCGGCAACCTCGACTTCTTCTTCGACAACACCCTCAATGGCGATCTAGACTTCTTCTTGGGCAACACCCTAACCGGCGATCTCGACTTCTTCTTGGACAATACTCTCACCGGTGATCTCGACTTCTTTAGCAACCACCTGATCACTGCTTCTTCTTCGGCAACACCCTCACCGACGACCTCGACTTCTTCTCAACACGACAACACCCTCACCGGCGACCTTGACTTCTTCTAGAACAACACCCTCA | |||||||||
gi|57812407|gb|CX613687.1|CX613687 GABR1_9_D04.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_9_ TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): CAGCAGCGGTAGTAGTAGTAGTGTAAAAGAGGACGAAAGCCATGGCGACAGAGTGGCCGCCGACGCTCCTTTTCCGTTAGGACTGCAGATTCCTTGGCGCTCCTCCTGCTCCTGCTCCCAGCGAGGACAAGAAAAACTAGGAGGAAGCAGCCCCCGGGCATTCATTCCCTTGTCCTGCTTTTCCACAAATTGTAGCGCTTGTTGCTTTCCTGTTCAGGTGCCTTGTTCTCGGCCTCCTTCGCACGCAAAGAACCGCCGGCCATCTTCCTCTCCAGCATCACCCACTGCGCTCCAGCTCCTGGAAGGCTTCTTCTTGGCCGCCTCTGCCTGCTTTGCGGTTTCTTGCTCTGCTTTTGAGTAGAGTCGCAGCGGAGTGGACAGTGTGGAGTGGATCGGCGGTGAGGTGGAAGGCCTTGGTTTTGTTCTGGTTCTTTGGAGAACAAGGGGAAGACGAAGAGGAGCAGGAGGAGGATGGCGGGAGGAGGGGC | |||||||||
gi|9300166|gb|BE358511.1|BE358511 DG1_31_G07.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): GCACGAGGGGCGACTCTCTCATCTGCTCTGCTTCTCCACTCCGCTCCGCCGGCAGCGCGGGCCATGGCGACGCCAGCGCCGGCGCCCTCCCTCCGCCTCCTCCTGCTGCTACCGCTGCTCACCGTCGCCGGCGCCGCGGTGTCTCACCCAGCGCACGAGTTCTGCGCAGTCGGGGGT | |||||||||
gi|33107971|gb|CF071312.1|CF071312 FE1_16_D07.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_16_D07_A002 5', mR TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): CTGGATTCATTCCCTTGTCCTGCTTTTCCACAAATTGTAGCGCTTGTTGCTTTCCTGTTCAGGTGCCTTGTTCTTGGCCTCCTTCGCACGCAAAGAACCGCCGGCCATCTTCCTCTCCAGCATCACCCACTGCGCTCCAGCTCCTGGAAGGCTTCTTCTTGGCCGCCTCTGCCTGCTTTGCGGTTTCTTGCTCTGCTTTTGAGTAGAGTCGCAGCGGAGTGGACAGTGTGGAGTGGATCAGCGGTGAGGTGGAAGGCCTTGGTTTTGTTCTGGTTCTTTGGAGAACAAGGGGAAGACGAAGAGGAGCAGGAGGAGGATGCGGGG | |||||||||
gi|160712376|gb|EH407063.1|EH407063 RTHAIR1_6_G10.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6_ TGGAGAAGCAGGACACGTGAG EST sequence (targeted fragment marked with yellow): CCAAGGCCAGCATCAGACGAGGCCCAGGACGGCACCCCATCAGCTGAGCCCAACTGTCTGCTGCCCTGCCGCTTGGGCCGCTGGCTGACACATACACTGCCTTCGGTGGTGCCCCAACGGTTTTTGAGCAGGTGTCCTGCTTCTCCGGTCTGCCAGCACTGCCGTTCAAGAGACCAGTGAGCCTTGGGGACCTTCTGGCGTTCTTTTTTTTGAGAAGGAANCCANCGGGACAGNGAGGAGCAGGGTCTCACACCACAGCAGNNCAGNACTGGAGCTGACTCCAAATTGCAACTGGAACCAGGAAAATGACATGTTACAGATGTGGAACCCCCTAGGGATATGAGATAGATCTGTGTTGTTTCGTTGATAGTGGTTGTGAAGTGCTGTCCCAGGTCTGGAGTGCTAGTACTGAGTGTACATGCAGATTAAATTTGATTAGTAGTGTGACATACAGATTACAGATTAGATTATTCATTATTGGACTAATGGCTTGGCGTAGTATTTGTACATAGGATTGCTAATGAAGGAACCGTGT | |||||||||