| mature miRNA: TGGAGAAGCAGGGCACATGCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73881073|gb|DT483811.1|DT483811 WS02523.B21_K07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_K07 3', mRNA sequence TGGAGAAGCAGGGCACATGCT EST sequence (targeted fragment marked with yellow): CAACTGGGTCATGCATGAATACAGATTAGAGGGTAAATTCTCTGCCCACAATCTCCCCAAAACTGCCAAGAATGAATGGGTGATTGGCAGGGTGTTTCAAAAGAGCTCGGCTGGAAAGAAGACCTATATTTCAGGTCTAGTGAGACTAGGTTCTTTTGGTAATGAATTTAGCCCTTATGGTCTGCCACCATTGACGGATTCTTCACCCTCCAATGGCAAGATTAAGCCGGTGGCCGAGTCGGCCTACGTGCCCTGCTTCTCCAATCTCAGTGATGATCAAAGAAACCAACAAGACACAACTGATAGCTTCAACAATCATCTTTTTGCAGTTTCTTCGAACCCTTCAGAGGTTTTTCCTCGAATCCCACTTCTGAATTCATTCTACTCTCCCCAGGCTGTCGCAGCATCAGGAAATTTGCAATATCCAGGTTCTGTTTCAATTCAAGACCGCTCAGTTTTAAAAGCCTTGATTGAGAACCAAGGCTCAAACATGAAGCAGCAAAGTTCCAAGCTTGAAAGGGACATGGCCAGTGTCTCACAAGATAGCGCTGCAGATATGAACAATGAAATCTCTTCTGTCATATCAAATCTTGAAGCGGGAAAAAGGTCATTTGATGAACAAGAGGCACCACCTTCTACATTAGTCCAATCAATGGACCTTGATTGTTTCTGGAACTATTGAAAAACAGTACTAGAAGGTGAACCTCAAGTTGAAGAAGATCAAGAAAAAGAAGAGCGTCAGTTACTGTTATTACTTATTTTGAAATTAAAATGTGGGTTTGTGCATAGATTTCTTGAATCAAATTGATAAATTGAAAGACAGTGAACAATGTTGTATGTATTGTAAGAAATTATCTTATGAATTATCTATGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885708|gb|DT488446.1|DT488446 WS02536.B21_H08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_H08 3', mRNA sequence TGGAGAAGCAGGGCACATGCT EST sequence (targeted fragment marked with yellow): GCGGCCTACGTGCCCTGCTTCTCCAATCCCATTAATGTTCAAAGAAACCAACAAGACACGATTGATAGCTTTGACAATCATCTTTTAGCATTTTCAACAAACCCTTTAGAGGTTTTTCCACGAATCCCACTTTTGAATCCATTCTACACTCCTCAGGCTGTCCCGGTATCAGGAAACTTACAATATCCAGGTTCTGTTTTAATGCAAGACCACTCGATCTTAAGAGCCTTGATTGCAAACCAAGGCACAAACATGAAGCAGCAAAGTTTCAAGATTGAAAGGGATATGGTCGGTGTCTCACAAGACAGTACTACAGATATGAATACTGAAATCTATTCAGTCATATCAAATCTTGAAGTGGGAAAAAGGTCAGGTGATGATCAAGATGCAACACCTTCTACATTAGTTGCATCAACGGACCTTGATTGTTTTTGGAACTATTGAGAAACAGTGCTACAAGACGAACCTCAAGTTGAAGAAGATCAAGAAAAAGAACAGCTTGATTTAATGTTATTATCTATTTTGAAATTATAATGTGGGCCTGTGTATAGATTTTCTTGATTCTGATTGACAAGTTGAAAGAGAGTGAAGCAAGAATTATGTATTGTAAGAAACTATTGTATGAATTTTTATGTTGTTTTTTCAATATCTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52385471|gb|CV231199.1|CV231199 WS0193.B21_N04 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_N04 3', mRNA sequence TGGAGAAGCAGGGCACATGCT EST sequence (targeted fragment marked with yellow): GCCTGTAGTCTGCCCTTTGACTTTGTCAAGACCCGCATCCAGAAGATGGAGGCCGGGCCCGACGGCAAATTCCCGTACGCAGGACCTGGTGACTGCGCCATGAAGACCCTCCGAAATGAGGGCTTCCTCAAGTTCTACACCGGCTTCCCTACATACTGTGTCAGGATTGCGCCCCATGTGGCCTTCACGCTCATCTTTGTTTCCAACCTGCAGAAGATCGAGAAGAGCATCGGGTGGTGATGCGAAAATCTACACGGCTTCAATGTTGGCCCTGCCTAATGTCCACTTCATGACTGATCTTGTTGCAAGGTCCTCGGCCCCACCAGAATAGCCTTGATCCATTTGCAATTTCATTTGCAATTGAAACATTTGGAAGGCCTTCAGTGGCCTACTGCGTTTTTGCCGCAATTGTCAGTGCCTCTCAGCGGGTTGCAGGCCATGAGTGTGGTTTAGGTGGCAACGCATGATTTTGGGCTGATCTCATCTCAGGTGTGGATGTGGTAAAGCGCTCAAGAAGCATGTACAGGCTGCAGCAGAATTTGCCCTGCTTTTTCGAGCAATTCCTTGGGTTGGTGCGTTGGCACATATTTGCGGCCGTTCATGTGGCAAGCGATTGAGGTCCAGCCTCGTCACAATTGATGCTAGAGTCCAGAGTCCTAATGACACCGCAGATGGCTAACGTTAGCCGAGAACATTTTCTTGTAACACTCGCTCAAAGATAAAAAAAAAAAAAAAAGTAAAAAAAAAAAAAAAAAA | |||||||||