| mature miRNA: TGGAGAAGCAGGGCACGTAAA species: Gossypium arboreum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18101286|gb|BM360540.1|BM360540 GA__Ea0032K16r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea TGGAGAAGCAGGGCACGTAAA EST sequence (targeted fragment marked with yellow): ACGTGATGCACCATTTCGGTAACCCCAATTTCGAGCTTATAAGACACGACGTGGTGGAGCCTTTGCTATTGGAAGTTGACCAGATCTACCATTTAGCTTGCCCTGCTTCACCAGTTCATTACAAATTCAACCCAGTCAAAACTATCAAGACAAATGTTGTGGGGACATTGAACATGTTAGGACTGGCGAAAAGAGTAGGTGCAAGGTTCTTATTAACCAGTACCAGCGAAGTATACGGAGATCCTCTTCAACATCCTCAGAAGGAAACTTATTGGGGCAACGTTAATCCCATTGGTGTCCGAAGCTGTTACGACGAGGGGAAACGTACAGCCGAAACCCTGACAATGGACTATCACAGAGGAGCTGGAGTTGAGGTTAGGATTGCCCGGATTTTCAATACTTACGGACCTCGTATGTGCATCGATGACGGTCGTGTTGTTAGCAACTTTGTTGCTCAGGCATTAAGGAAGGAGCCTTTGACTGTGTATGGTGATGGGAAACAGACAAGGAGTTTCCAATATGTTTCTGATCTGGTGGAGGGGCTAATGCGATTGATGGAAGGAGAACATGTTGGACCTTNTAACCTTGGAAATCCGGGTGAATTCACCATG | |||||||||
gi|13351725|gb|BG442073.1|BG442073 GA__Ea0015K15f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea TGGAGAAGCAGGGCACGTAAA EST sequence (targeted fragment marked with yellow): AAAACAATGAATTGAAAGGTGTTTCAGCTTTTCCTCTTTGAACTTTAGCTGAAAGGAAAAACATATTTTTACTTCATTCATTCAAATTCCCACACAAAAAGGGGAAAAACTCAGAAATTTTAAGCCATGAAACAGTTACACAAGCAATCAAGCGTTAACCATACGCGAGATGAAGAGATCTTAATACCTCAAACACCTCCTTACTCACCCAAATCCTTAAAACACCCCAGATCTCTCCCTAGATCCATTAACTATCTCTTCAAAGAACAACGCCTTTTGTTCATCTTCATCGGCATTTTAATCGGTTCTACTTTCTTCATCCTCCAACCAACTCTCTCTCGTTTAGGCCCAACCGAGACTCACCCTTCGATCCCCAAATCTTTCTCTAACAACGTCGTTTCCCACACCCACGAGTTCTCCGTTTCCAATCAGAATCCTATTCATGGCAAAATGGGTCGTGTTCCCGTCGGGATCGGTCGACGGAGGATGAGGATCGTTGTCACCGGTGGTGCTGGGTTTGTCAGTAGTCACCTCGTTGATAAGCTAATTGGAAGAGGCGATGAAGTGATTGTTATCGATAATTTCTTCACTGGGAGGAAAGAAAACGTGGTTCATCTCTTTGGAAATCCGAGGTTCGAATTGATTCGACATGACGTCGGTGAACCGATTCTCTTGAAAGTAGATCAGATCTATGCTTTAGCTTGCCCTGCTTCACCAGGTCATTATAAATATTACTCCCCGTGAGACCATCCAAGAAAGATGTGATGGCTACTCGTAACAATGTGGGGCCCTGCAAAAAAGTTGGGGCCAAGGTTTGGCTACCAACCACAATGAAGTTTACGGTAAACGCTCTAACATCCCAAAG | |||||||||
gi|195982807|gb|FL577064.1|FL577064 cembMI0697 cDNA library from leaves of Gossypium arboreum Gossypium arboreum cDNA clone CI01 TGGAGAAGCAGGGCACGTAAA EST sequence (targeted fragment marked with yellow): CTCCCAGTAAAAAAGTAAAATAGCTATGAAATTTGTTTCATTTAAAACTAGACTCAATAAGGAATCTAGGCATATAAACTATATTTCTTAATTATTTTTTTTACAATTTTTAATGATTTATCAAAGTCAGAATAGGGGATCACATAGTCATTCTGAACATGTTACACACAAATATAAATATCTCAAAATATAGAGTTCCTTTACTTGCTCTGTTTCTCTTACATGAGAATAGACTCATTAAGCTTTAATTTAATATCTCATTCAGCCTCTAATTAAATTCCTACTATTTTTGGTGATTTTTCAAATTCACGTCACTGCGACTGTCCAAAATAGTATTATTGTAAATTCACTCTTTCACACTTTCTTTGTATTAACCTCATTTAGCATACATACCACAATTCATTTTCACCACATTTCATTCACTATAAGTGTACTAGC | |||||||||
gi|21094163|gb|BQ406476.1|BQ406476 GA__Ed0095A01f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed TGGAGAAGCAGGGCACGTAAA EST sequence (targeted fragment marked with yellow): TGAACATGAAGCTCAGTACAATTTGCACTTGAAAGGGAATTCCTGCTGTGTCTGCTGTGATGGGTACTAAGAGACTTCCCTACCCTGGCAGAGTATTTGATATTGTTCATTGTGCACGATGTAGAGTTCCATGGCACATAGAAGGTGGTAAACTCCTCTTGGAGCTGAACCGTGTCCTGCGACCTGGTGGTTTCTTTGTGTGGTCTGCTACTCCAATTTATCAGGACAAGACTGAAGATGTTGAAATCTGGGAAGCTATGGTTGAACTAACAAAATCAATGTGCTGGGAGCTTTTAAACAAAACTAGTAAGGATGCAGTAAATGGCGTGGCTGTAGCAGCATTTAGGAAGCCTACTTCTAACGACTGCTACGAGCAACGGTCAAAACAAGAGCCTCCACTCTGTCCTGAGTCTGATGATCCAAATGCGGCATGGAATGTGCCCCTGCAAGCTTGCATGCACAAAGTGCCAGTAGATGCTTCAGAACGTGGGTCTCAGTGGCCTGAGCGATGGCCAGAAAGGTTGGAAAATCACCCTATTGGTTGAGTTCCAAGTTGGAGTTTATGGCAAACAGCACCAGAGGATTTTGCTGCAGCAATGAGCACTGGAAACGGGTANTAACTAAGTCATACCTAAATGGGATGGGAATAAGCTGGTCATCTGCAAAAATGTCATGGAC | |||||||||
gi|11201848|gb|BF270853.1|BF270853 GA__Eb0009M12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb TGGAGAAGCAGGGCACGTAAA EST sequence (targeted fragment marked with yellow): TGGAAATGAATTGGGTCCGTCCGGNTCTTCCACCATTAATGGATTCTTCTTCAAGTTTCAATGCCAAGAAAAACCCTGTTTCTGAATCGGTTTACGTGCCCTGCTTCTCCAATCCCGTCGACGTTCAACGCATTCAACTCGACACAATCGATCATTTTCCCGAGAATCCTCTCCTCCTCCCTGTTTCATCGAATCCAACAAATATTTTCCCGAGATTCCAAGCTTCAAACCCTTTCTTCTCGGCTCAACCCATCACTTTCCCACCCAATCTTCACCTCCCTGGCTCTGTTTTAATGCAAGACCAATCCATCCTTAGGGATTTACTTGAAAACCATGGATCAAACATGAAATCAGAGAGGGAAACAATGGTTACTGTTTCACAAGAAACTGGTTTAACCACTGATATCAACAATGAAATCTCTTCTGTTGTGTCCAATCTGGAGATTCGAAAGAGGCCATTTGATGATCAACAACACCCTTCTGCTTCAACTGGACCTCTGGATTTCGATTGTTTCTGGCATTACTGAAAAAAAAATCCCATTATTGTCTGCAAAATTAGAGTTTATGTTACTATTATTG | |||||||||