| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78326446|gb|DT546720.1|DT546720 EST1057360 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AAACCCTTGTTTTCTTCACTTCTTGCTGATCAACTTTGTCCTTTGAAGTCCAGGGTTTTCGGCTATGGATAGTTACCATCATTTTGACAATGGTGAAACGCATTTACCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAGCTCATTACATACTATCTGGTGAAGAAAGTTCTTGATAGGAGCTTTACTGGTAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCTTGGGAACTTCCTGACAGGGCAAAGATGGGAGAGAAAGAGTGGTACTTTTTTAGCCTAAGAGATAGGAAGTACCCAACTGGGTTGAGAACTAACCGAGCTACTGAAGCTGGTTACTGGAAAGCTACTGGGAAAGATAGGGAGATTTATAGTTCAAAGACTTGTGCACTTGTTGGAATGAAGAAAACTCTGGTTTTCTATAGAGGAAGAGCTCCTAAAGGAGAGAAAAGCAACTGGGTCATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTAATATCCAGGGTCTTTCAGAAGAGCAGCGGAGGAGCCAAGAAGGCCCCCATGAGCGCCGCTTCCATGGTGCTCTACCAAGAACCAAGCTCACCTTCCTCGGTCTGTCTTCCACCGCTCCTGGATACCACCAATGCTACTGGCAGTGGTACCGCTACCGGTGCTTCCCTCACTGACCGTGACAGCTGCTCTTACGACAGCCATAACCAATCCGAGCACGTGTCCTGTTTCTCCACCATTGCTGCCACCTCGTCAGCCAC | |||||||||
gi|84149530|gb|DN780830.1|DN780830 G.hir-Cotyledon 1358 cDNA from Cotyledons Gossypium hirsutum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGCACTGCTTCTCCAATGGCGACTCAGCTGAAGAGCAGCTTTAGGTCGTCTGTTACAAGAGGACTGGTAGTCCCCAGGGGCATTTCGGGATCCCCGTTTAAAGTATCTTCCGGAAAGACCAGGACCCCTTGCTTCACTGTCAAAGCTGTTCAATCCGACAAGTCAACATTTCAAGTAATCCAACCCATCAACGGCGACCCCTTCATTGGAAGCCTGGAGACTCCAATCACCTCAAGCCCCTTAATTGCATGGTACCTTTCCAACCTCCCAGCCTATAGGACGGCAGTGAACCCACTTCTGAGGGGAATCGAAGTGGGTCTGGCTCACGGCTTCCTCCTGGTTGGTCCATTCGTAAAGGCCGGCCCTCTAAGGAACACTGCGGTGGCGGGTCAAGCTGGGTCCTTAGCCGCTGCCGGTTTGGTTGTGATCCTCAGCATTTGCTTGACGATGTATGGTGTTGCGTCGTTCAAAGAAGGTGAGCCATCGATAGCACCGAGCCTAACCCTGACTGGGAGGAAGAAAGAGCCAGACCAGTTGCAAACGGCGGATGGATGGGCTAAGTTCACTGGAGGGTTCTTCTTTGGTGGAATCTCTGGTGTCACTTGGGCTTACTTCCTCCTGTATGTCCTTGACCTTCCTTACTACTTTAAGTAGATCATCATTTGATCTATGTTTTACCTGGTCCCTTTTTTAATGTAAATCTTTGTATTCAGGATGATCCTTTGGGAACGAATATCAATTATATCAAGTGATTGTCACT | |||||||||
gi|84172492|gb|DR461140.1|DR461140 CM094C04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TCGGCGCTGCAGCCGACCTATTGGATCANAGAATTCGGCACCAGGCAACTTAGAATTGTCTGCGTGAAAGCAAAAAAAAAAAAAGGAAGAAGAATTGATGATTGCAGGTGAAGAGAGGAATGTAAAAGATAAACATATATATGATAGATTACCTTTTTTGTCCTGGTCGACATCTGTAGTTTCAAAGAGGTGAGATGCAGTTGCAGATTCAGTACTGCAATCAGCAATCAGAATGAGAAACTCACGGTGGAGAAGGGGAGCACGTGCAAAGTTCACTTAAACATAGGAACTTGCACGTGCCCTGCTTCTCCAACAAGAGATACTCACCCCCAACCAACCCATCCAAGTAAAGCTTTTCAAGTTCATGAGTTGAGTGCAGAAAGCAAAGGAAGTGACATTTATTTATATACAAGTTTTTCCGAAGAGAGAGAGAGAGAACAAAAAGAAGAGAGTAATAGAGATTGAGTCTAGAAGTGGGCATTCTTTACAGACAGAGCTCTGGGGTCTAAGTTTTCATGTATCTATCTATCTGGTTTGTAATTATGAAATTCAGAGATGTTTTAATCTAATTGATATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAACAAACAACAAAATAAACACACAAAAAAAAAAAAAACAGAAGAAAAAAAAAACACAAAAAATACAAAAAGAGCGGGGGCCATATATTCACACCGGTGGGTCCCGTAACTATCCAAACTCCCATAGTGCATGAACAAAACACGGGCACTACAAAACG | |||||||||
gi|78344487|gb|DT564761.1|DT564761 EST1075401 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TTCACACACAAGGGAAAGGCAATTTGAGAGATTTCAGAACACTTCTGAGCCTCTGATAAAAACAAACACACATCTCATCACCTTCAGATCATGCCCTTTCTTACTATATAATTGTTTGCCCTTTTGGCCCCAATATAACACCCTCTCTTCATTCCTTTCCTCTTCAGTTTCAAACCCTTGTTTTCTTCACTTCTTGCTGATCAACTTTGTCCTTTGAAGTCCAGGGTTTTCGGCTATGGATAGTTACCATCATTTTGACAATGGTGAAACGCATTTACCTCCAGGTTTTCGTTTCCATCCAACTGATGAAGAGCTCATTACATACTATCTGGTGAAGAAAGTTCTTGATAGGAGCTTTACTGGTAGAGCCATAGCTGAAGTTGACCTCAACAAGTGTGAGCCTTGGGAACTTCCTGACAGGGCAAAGATGGGAGAGAAAGAGTGGTACTTTTTTAGCCTAAGAGATAGGAAGTACCCAACTGGGTTGAGAACTAACCGAGCTACTGAAGCTGGTTACTGGAAAGCTACTGGGAAAGATAGGGAGATTTATAGTTCAAAGACTTGTGCACTTGTTGGAATGAAGAAAACTCTGGTTTTCTATAGAGGAAGAGCTCCTAAAGGAGAGAAAAGCAACTGGGTCATGCATGAATATCGCCTTGAAGGCAAATTTGCTTACCATTATCTCTCTAGAAGCTCCAAGGATGAGTGGGTAATATCCAGGGTCTTTCAGAAGAGCAGCGGAGGAGCCAAGAAGGCCCCCATGAGCGCCGCTTCCATGGTGCTCTACCAAGAACCAAGCTCACCTTCCTCGGTCTGTCTTCCACCGCTCCTGGATACCACCAATGCTACTGGGCAGTGGTACCGCTACCGGTGCTTCCCTCACTGACCGTGACAGCTGCTCTTACGACAGCCATAACCAATCCGAGCACGTGTCCTGTTTCTCCACCATTGCTGCCACCTCGTCAGCCACCC | |||||||||