| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Lactuca virosa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|84033182|gb|DW168501.1|DW168501 CLVY6851.b1_F10.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY6851, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AACGCCAGTTTGCCTTTTTCCGACAGCCGTGTGCGGAGGAGGTGCTACTTAAGTATACTGCTATGGAGTTTTTCACACACCATTTTGATAACACTGAAGCTTGTTTGCCACCTGGGTTTAGATTCCATCCGACTGATGAAGAACTCATCACTTGTTACCTTCTCCGAAAAGTCCTCGACGGCAGCTTCACCGGCCGGGCATTCGCCGACGTTGATCTTAACAAATGCGAACCATGGGAGCTTCCACAAAGAGCGAAAATGGGGGAGAAAGAATGGTACTTTTTCAGTCTCCGGGACAGGAAATACCCAACTGGGCTGAGAACTAACAGGGCGACGGAGGCCGGCTACTGGAAAGCCACCGGAAAAGACCGCGAGATCTACAGCTCCAAGACTTCTGCTCTTGTGGGGATGAAGAAAACCCTAGTTTTCTACCGTGGTGGGGCTCCAAAAGGGGAGAAAAGCAACTGGGTGATGCATGAATATCGTCTTGAAGGCAAATTTGCCTACCATTTTCTCTCTAAAAGCTCCAAGGATGAATGGGTGATCTCCCGTGTTTTCAAGAAAAGTGGTGTCGGATCTGTCGGCGGCGCCGGCAGCGGCAGCGGCGGTGGTAGCGTTGGCGTTGGGAAGAAGTGGTTTAGCGGTGGGATAAATATCGGGAAAGAAGCCAGCTCCTCGTCGGCGGTTTCGGGTTCACTACCACCATTACTCGACTCCTCCACCTACGTTCCCGGCGAACAAGAAAGCTTCTCCTACGACAGCAACGCCGCTTCAAAAGAGCACGTGCCCTGTTTCTCCACTGCCTCAACTTGCACCTTCGGCCCTCAGCCTCTCTTTGATTTCCC | |||||||||
gi|84030678|gb|DW165997.1|DW165997 CLVY4506.b1_C24.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY4506, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): AACAGGTGTATATTGCGTGTCCTTTGTACCCGTGTCAAATTGCCTGAAACTTGACAGGGTACCTTAATTACTCTCGCGGAAGGTGAGTGTGTGGTGCGAAATACTACGATATAGTCTTACTATGGTGTTGCTACGCTTGCCTTAGACGAGTTAATCATGTGTGCTGTTTTCAAAGTTGTGATGTGAGATATCTGTTTGATTAACGACTCTTGAAGAAGGATATTGGTCACCGGAAGAGCTGGTTTCATTGGCTCTCATCTTGTGGACAGATTGATGCAAAATGAAAAAGAACGAGGTGGTGGTTGATAAATAATTACTTCCCCGGTTCAAAGGACAACCTTAAACAATGGGTTGGTCTTCCAAGATTTGAGCTTATTCGCCATGATGTCACGGAGCCATTGTTGATTGAGATCGATCAAATATATCATCGTGCTTGTCCTGCTTCTCCAATTTTCTACAAACATAATCCTGTCAAGACAATCCATACAAATGTGATTGGAACTTTGAACATGTTGGGACTTGCCAAGCGAGTTGTACCAAGAATTTTGTTGACTTCAACTTCAGAGGTTTATGGAGACCCTCTAGTCCACCCTCAAGATGAAAGCTATTGGGGAAATGTCAACCCTATCGGGGTTAGGAGTTGTTATGATGAAGGAAAGCGAGTAGCTGAGACATTGATGTTTGACTATCATAGGCAACATGCAATAGAAATAAGAATTGCTAGGATCTTCAATACATATGGACCTAGAATGAACATTGATGATGCGCGTGT | |||||||||
gi|84022560|gb|DW159830.1|DW159830 CLVY11935.b1_M07.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY11935, mRNA sequen TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CAAACCAAACCAAAACGCCAGTTTGCCTTTTTCCGACAGCCGTGTGCGGAGGAGGTGCTACTTAAGTATACTGCTATGGAGTTTTTCACACACCATTTTGATAACACTGAAGCTTGTTTGCCACCTGGGTTTAGATTCCATCCGACTGATGAAGAACTCATCACTTGTTACCTTCTCCGAAAAGTCCTCGACGGCAGCTTCACCGGCCGGGCATTCGCCGACGTTGATCTTAACAAATGCGAACCATGGGAGCTTCCACAAAGACCGAAAATGGGGGAGAAAGAATGGTACTTTTTCAGTCTCCGGGACAGGAAATACCCAACTGGGCTGAGAACTAACAGGGCGACGGAGGCCGGCTACTGGAAAGCCACCGGAAAAGACCGCGAGATCTACAGCTCCAAGACTTCTGCTCTTGTGGGGATGAAGAAAACCCTAGTTTTCTACCGTGGTAGGGCTCCAAAAGGGGAGAAAAGCAACTGGGTGATGCATGAATATCGTCTTGAAGGCAAATTTGCCTACCATTTTCTCTCTAAAAGCTCCAAGGATGAATGGGTGATCTCCCGTGTTTTCAAGAAAAGTGGTGTCGGATCTGTCGGCGGCGCCGGCAGCGGCAGCGGCGGTGGTAGCGTTGGCGTTGGGAAGAAGTGGTTTAGCGGTGGGATAAATATCGGGAAAGAAGCCAGCTCCTCGTCGGCGGTTTCGGGTTCACTACCACCATTACTCGACTCCTCCACCTACGTTCCCGGCGAACAAGAAAGCTTCTCCTACGACAGCAACGCCGCTTCAAAAGAGCACGTGCCCTGTTTCTCCACTGGCTCAACTTGCACCTT | |||||||||
gi|84021305|gb|DW158575.1|DW158575 CLVY10689.b1_B10.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY10689, mRNA sequen TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CTTCAAACCTCATAATTCTTCCTTTGTTCTTCGTTTCCACCATAAATTTTGCATATTACACACACTAATTACACGCACATGGCACACANCTTTTGTTCACAAAGACGAGATTGACCTCCCTCCAGGTTTCCGATTCCATCCAACAGACGAAGAACTTATATCTCACTACCTTTACCCAAAGGTTTCAAACATCAATTTCTCTGCTCTAGCGATTGGAGAAGTCGATTTGAACAAAGTCGAACCATGGGAGCTTCCATGGAGAGCAAACCTCGGTGAGCAAGAATGGTTCTTCTTCTGTGTTCGTGATCGAAAATACCCAACTGGATCAAGAACTAACAGAGCTACAAGTGCAGGGTATTGGAAAGCTACAGGGAAAGATAAAGAGATTTTCAAAGAGAAATCGCTCGTGGGTATGAAGAAAACACTTGTGTTTTATAAAGGAAGAGCTCCGAAAGGTGAAAAGACAGATTGGGTTATGCATGAATATCGATTAGATGGAAAGTTTTCAACGATTAATCTCCCAAAATCCTCCAAGGGTGAATGGGTGATTAGTAGGGTTTTCTACAAGACTACGGGTGGGAAAAAGATTTCGATTTCAGCTTTATTGAAGATGAAGAATGGAAACACCTATGAACATGACTTCGGCTCTGCAGATTTGCCTCCATTAATGGAGATTTCAAGTGTGGAAGGAGGATCAAGAACCGAGACATCTCACGTGACCTGCTTCTCCAATTCCATGGAAGAACAAAAACCAAAGAACGAAGAAATGATGGGCAGTTGGAGCTCAGGGAATTCATTAATGGCGTCAAGAACTGATAACGTTTCTTTCCTTTCAAATCAAATGGCCCCAAACGTTGAAAATTATCAGTATCAAGACACGAC | |||||||||