| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52388153|gb|CV232525.1|CV232525 WS0197.B21_N23 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0197_N23 3', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GGTTTTGTCTGACGTGGTCTCCTTGCTCGACGACTTGGCTAGGGGTACGGTGCCGTTTGATACTGTCACCGAGGTTTTTGGCAGGCTTGGGTTGTTGTTCTTTGGGTTCCCTATGAAGGCAAAATTGTTCTGTGCGGTTTTGGTAAATATAAATAACCAGACAATTGTTTGTCAGAGTTGTTACCCTGAGTCAGAGATGAATTTGAAGCCTTGAGGCAGGTGGTGCAGCATAATTAAGCTAAAAGATCCAGTCAGTGCTCCTCCATGTATAGACAGGAAAACCTGGGCTAGTGACATTGGAAGCATGCATATGCCCTGTTTTTCCTATCTGTATGTATTTTTACCTTGAGAATCATTAATTCTGTGTATGTATATATGTCCATGGCATTTGTAGTATTATTACTACTACATATCAACTTAATCATCAATTTTGTACTCAATGATGCTGCGTATATATAAGCAGTGGACTTTCTGTGTTTTTTTTTTCTTTTTTTTTTTTTGGTTAATAACTAGTTTATTTAGGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73885708|gb|DT488446.1|DT488446 WS02536.B21_H08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_H08 3', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCGGCCTACGTGCCCTGCTTCTCCAATCCCATTAATGTTCAAAGAAACCAACAAGACACGATTGATAGCTTTGACAATCATCTTTTAGCATTTTCAACAAACCCTTTAGAGGTTTTTCCACGAATCCCACTTTTGAATCCATTCTACACTCCTCAGGCTGTCCCGGTATCAGGAAACTTACAATATCCAGGTTCTGTTTTAATGCAAGACCACTCGATCTTAAGAGCCTTGATTGCAAACCAAGGCACAAACATGAAGCAGCAAAGTTTCAAGATTGAAAGGGATATGGTCGGTGTCTCACAAGACAGTACTACAGATATGAATACTGAAATCTATTCAGTCATATCAAATCTTGAAGTGGGAAAAAGGTCAGGTGATGATCAAGATGCAACACCTTCTACATTAGTTGCATCAACGGACCTTGATTGTTTTTGGAACTATTGAGAAACAGTGCTACAAGACGAACCTCAAGTTGAAGAAGATCAAGAAAAAGAACAGCTTGATTTAATGTTATTATCTATTTTGAAATTATAATGTGGGCCTGTGTATAGATTTTCTTGATTCTGATTGACAAGTTGAAAGAGAGTGAAGCAAGAATTATGTATTGTAAGAAACTATTGTATGAATTTTTATGTTGTTTTTTCAATATCTGAAAAAAAAAAAAAAAAAA | |||||||||
gi|52501477|gb|CV248502.1|CV248502 WS01120.B21_P20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_P20 3', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TATGAACGTCCCTGCTTCTTCATCTCGGAGTGCTGGTTATCGTGCTCCTGAGGTGATTGAAACCAGTAAGCACTCTCATAAATCAGATGTCTACAGCTTTGGTGTCATCCTTCTCGAGATGCTGACTGGGAAAGCTCCAATCCAATCACCAAGGCGTGATGACATGGTTGATCTCCCAAGATGGGTCCAATCAGTTGTAAGGGAGGAGTGGACAGCTGAGGTTTTCGATGTTGAACTGATGAGATACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATTGGGATGACCTGTGTAGCAAAGGTGCCAGACATGCGACCTAACATGGAAGAAGTTGTTCGAATGATTGAAGAAATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGGGAACAAGTCCAAGGACTCAAATGTGCATACTCCATGATTGACGAAATTGTTGCTGCTTGATTTTAAGATCAAGATTCAAAAAGTGCTATGAGCACCTGCCTTGTAAGGTTTCTCGAGCATTTATTCAAGCTTATGTGTATGTGCAGTGCAGCATCATAGAGTGTGAATTTGTCTCAATTTTTTTTCTTCTTTTTTCAGATATGTAGCAGTGCTTTGATTTTTAATTTTTAAGTCTGATTAGCTGGAAACCTCTTGATTTGTTGTAAAACTTCATTCAAAATTTGTGAATGAATTGATGAGACTTGAATCAAGAACACTCCATTTTTTTCAAAAAAAAAAAAAAAA | |||||||||
gi|73881073|gb|DT483811.1|DT483811 WS02523.B21_K07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_K07 3', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CAACTGGGTCATGCATGAATACAGATTAGAGGGTAAATTCTCTGCCCACAATCTCCCCAAAACTGCCAAGAATGAATGGGTGATTGGCAGGGTGTTTCAAAAGAGCTCGGCTGGAAAGAAGACCTATATTTCAGGTCTAGTGAGACTAGGTTCTTTTGGTAATGAATTTAGCCCTTATGGTCTGCCACCATTGACGGATTCTTCACCCTCCAATGGCAAGATTAAGCCGGTGGCCGAGTCGGCCTACGTGCCCTGCTTCTCCAATCTCAGTGATGATCAAAGAAACCAACAAGACACAACTGATAGCTTCAACAATCATCTTTTTGCAGTTTCTTCGAACCCTTCAGAGGTTTTTCCTCGAATCCCACTTCTGAATTCATTCTACTCTCCCCAGGCTGTCGCAGCATCAGGAAATTTGCAATATCCAGGTTCTGTTTCAATTCAAGACCGCTCAGTTTTAAAAGCCTTGATTGAGAACCAAGGCTCAAACATGAAGCAGCAAAGTTCCAAGCTTGAAAGGGACATGGCCAGTGTCTCACAAGATAGCGCTGCAGATATGAACAATGAAATCTCTTCTGTCATATCAAATCTTGAAGCGGGAAAAAGGTCATTTGATGAACAAGAGGCACCACCTTCTACATTAGTCCAATCAATGGACCTTGATTGTTTCTGGAACTATTGAAAAACAGTACTAGAAGGTGAACCTCAAGTTGAAGAAGATCAAGAAAAAGAAGAGCGTCAGTTACTGTTATTACTTATTTTGAAATTAAAATGTGGGTTTGTGCATAGATTTCTTGAATCAAATTGATAAATTGAAAGACAGTGAACAATGTTGTATGTATTGTAAGAAATTATCTTATGAATTATCTATGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73892874|gb|DT495612.1|DT495612 WS01120.BR_P20 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_P20 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TCCAAAGTTTACTCATGGAAATATCAAGTCGTCAAATGTCCTCCTCAGCCAAGATCATGATGGTTGCATCTCTGATTTTGGCCTGACACCTCTTATGAACGTCCCTGCTTCTTCATCTCGGAGTGCTGGTTATCGTGCTCCTGAGGTGATTGAAACCAGTAAGCACTCTCATAAATCAGATGTCTACAGCTTTGGTGTCATCCTTCTCGAGATGCTGACTGGGAAAGCTCCAATCCAATCACCAAGGCGTGATGACATGGTTGATCTCCCAAGATGGGTCCAATCAGTTGTAAGGGAGGAGTGGACAGCTGAGGTTTTCGATGTTGAACTGATGAGATACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATTGGGATGACCTGTGTAGCAAAGGTGCCAGACATGCGACCTAACATGGAAGAAGTTGTTCGAATGATTGAAGAAATCCGGCAATCTGACTCAGAGAACCGGCCATCTTCTGAAGGGAACAAGTCCAAGGACTCAAATGTGCATACTCCATGATTGACGAAATTGTTGCTGCTTGATTTTAAGATCAAGATTCAAAAAGTGCTATGAGCACCTGCCTTGTAAGGTTTCTCGAGCATTTATTCAAGCTTATGTGTATGTGCAGTGCAGCATCATAGAGTGTGAATTTGTCTCAATTTTTTTTCTTCTTTTTTCAGATATGTAGCAGTGCTTTGATTTTTAATTTTTAAGTCTGATTAGCTGGAAACCTCTTGATTTGTTGTAAAACTTCATTCAAAATTTGTGAATGAATTGATGAGACTTGAATCAAGAACACTCCATTTTTTTCAAAAAAAAAAAAAAA | |||||||||
gi|73893229|gb|DT495967.1|DT495967 WS01122.BR_A08 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01122_A08 5', mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TCCGAAGCACCGTCACTTCCGTGCTCTGCTCTCAAAATCCGTGAGCTGCGGTGAAAAAGCGAAAAATGTCGCCGACGCAACTTTTATCGACTTCGATTTCTTCTTCTTCCTCTGCTTTTTTAGCCGCACCTATTGCCTTCAAAGCTAGAAACCAGAATGTTTCGATCGCGTCGAAAACGCCTTCTATTTGCACGTGTGCTGCTGCTCCTCAAGAACAGAAAACCGTTTACAAAACACAAGTCTCCCGCAATGCAAATATTGCAAAGCTTCAAGCTGGTTACTTATTTCCAGAGGTTGCTCGAAGGAGGAATGCGCACATGCTGAAATACCCTGATGCAAAAGTGATAAGCCTTGGAATTGGTGACACTACAGAACCTATCCCAGAAGTTATAACTTCTGCAATAGCAAAGAGAGCAGAAGCACTGTCTACTTTGGAGGGTTACGGTGGTTATGGACCTGAACAAGGTGAAAAACCTTTGAGAACTGCAATTGCTTCAACATTTTATTCAGGTCTTGGGATCGAGGAGGATGATATATTTGTCTCTGATGGTGCCAAATGTGACATATCTCGCCTCCAGATGGTATTTGGGGCAAATGTAACCATGGCAGTGCAAGATCCATCATACCCGGCTTACGTCGATTCTAGTGTCATCATGGGCCAGACTGGACAGTTTCAGAAAGACATTGAGAAGTACGGTAAGATTGAATACATGAGGTGCACTCCAGAGAATGGTTTTTTCCCTGATTTATCCAAAGTTTCTCGAACGGATATCATATTTTTCTGTTCACCGAACAATCCTACTGGTTCTGCTGCAACAAGGGAGCAACTGACCCAACTAGTACAATTTGCAAAGGACAATGGATCAATCATCGTCTATGA | |||||||||
gi|18019691|gb|BI138743.1|BI138743 F115P03Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GTATGAACGTCCCTGCTTCTTCATCTCGGAGTGCTGGTTATCGTGCTCCTGAGGTGTCAGGCCAAAATCAGAGATGCAACCATCATGATCTTGGCTGAGGAGGACATTTGACGACTTGATATTTCCATGAGTAAACTTTGGACCGCCAGCAGAATGAAGGTGGGAAATTCCCCGTGCAGTACCAAGGGCAATCTTAACCCTAGAGTCCCAATCTAGTGGAGTTCTGCCAGCTCCCCTGTTTGCATGCAAAAGCGTGGATAGCTGCCACCTGGGATATAGTCATACACTAGAAGCCTCTCATCCTTTGAGTAATAATAAGCACGAAGTGGCACAACATTTGGGTGCTGCCAATCTCTCCCCGCAATCTCCATCTGCTGCTCAAAGTCTCTCTTTCCCACCA | |||||||||