| mature miRNA: TGGAGAAGCAGGGCACGTGCA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14592389|gb|BI139946.1|BI139946 IP1_47_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGGAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCANAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCT | |||||||||
gi|30966119|gb|CD222685.1|CD222685 CCC1_23_D05.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_23_D05_A00 TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCGTTACGGTCTGCTCATGCTCGAGCTCCAGCCTAGCAGGATTTTGCTGTGCTGTGCGTGCTCTCCTTCTCCGTGCGCCTTCCAGTCTGTCTCACACTACTAGCTTGGATCGATCCATCGATCGAAGTGGGTGTGTCAGTGTCAGCTGGCGCGGTGACCACGCATATGAGCGCACGCAGCGCGGAGCTGATCAAGGGAAAGTGATCGATCGGATGGAGCTGGAGCTCGGGCTCGCGCTGCCAAACCCGTACCAGTCGCCGATGGCCGCCGGCGGGGAGCTCGTCGGTCTGCTCAGCGGCTCGGCGGGCGCGTGCGGGAAGAAGAGGGTGTTCGGCGACGCGTTCGGGGCCGCCGCCAAGGCCACGCTTCTTCCGCTCTTCGTGCACGAGGATGGTGACGGCGGCAGCGGCGACCACGACGATGTCGACCATGATCCAAGCAACAAGAAGAAGAGGCTGGTTGGGTGGCCGCCGGTGAAGTGCGCGCGCAGGCGGAGCTGCGGCGGCGGCGGTGGTTACGTGAAGGTCAAGATGGAAGGGGTGGCCATCGGGCGGAAGGTGGACGTGTCCCTCCACGGCTCGTACCAGGAGCTGCTCCGCACGCTCGAGCGCATGTTCCCCTCGGCTAACCAACAAGGTGC | |||||||||
gi|160710139|gb|EH407703.1|EH407703 RTHAIR1_14_H07.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_1 TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGCCAGGTTACGAGCGCCTTTGCTGCCTTCGGTGCATACAGACACGTGACCACAACTTTGCAACGACCTGTGTCTGCCGGGTCCC | |||||||||
gi|14570430|gb|BI098848.1|BI098848 IP1_34_A05.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGCTCAGACGCAGTGTTCCATTCCAACATTTAGCTAGCCAACAAGGATCATCGGAGCTCGGGCTCAAGTACTTGTTCTTAGCTGACTTCTTCATTGTAGGAAACAATGGCTACCTCCTATCTGCTGCCTTGCTATGTCCTCATCACTGTGCTCGTGCTCTTCTTCTCCGTCGACGTTACGGAAGGGGCCATCAGGGAGTACCAGTTCGATGTGCAAATGACCAATGTGACGCGGCTGTGCAGCAGCAAGAGCATCGTGACCG | |||||||||
gi|12616548|gb|BG101778.1|BG101778 EM1_5_B05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGAACTAGTCTGAGTTCTTGTACTGCAGCGGCATGGTCCTGGTTCCATTTTTGTTGCTCTTCTAGGAGTCGTCCATGTTCTGCTTGCATGTTCTGGATGTCGAGGAGAGTGTTCTCGGTACGAGTGAAGAAAGCACCGGCCTCTTGATAGTAGTCATTCGTGAAAGCGTAGGAGGCGTCGGAGTATCGTCCTGCATCAAATTGGGGTGGAGGTCTGGATCCTGAAGCTCCATATGGATCAGTGGAGTACCTGCCCGTATGGAAAGGCGGGTTTGTCCACTGGTGGTCTTGGCTCTCCGGCCATGTCTCCTCTATTGGCTCTTATGGTTGCGCATGTCGAACCCATGGGTCTCGAAGGACTCAGGGGTTGTAATCGCAATAATGCAGGTGCGCTGCTTCTTCTGGTCCAGGATCAGCTCCATACCAGGTGCGTTCTCGATGTGTGGTC | |||||||||
gi|13468711|gb|BG487476.1|BG487476 EM1_65_E05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGGCCGATCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGACC | |||||||||
gi|12691591|gb|BG157891.1|BG157891 EM1_6_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GGCTTCTGGAGCCGCTCCGGGTTCGGCCGCGGCGTAGTGATTGGGCTCCTCGACACCGGCATCCTGCCCAGCCACCCGTCCTTCAACGACGCCGGGCTGCCGCCGCCGCCCAAGAAGTGGAAGGGCACCTGCCAGTTCAGGTCGATCGCCGGCGGCGGGTGCAGCAACAAGGTTATTGGCGCGCGCGCGTTCGGGAGCGCGGCCATCAACAACACGGCGCCGCCCGTGGACGACGCCGGCCACGGCACGCACACGGCCAGCACGGCGGCGGGCAACTTCGTGCAGAACGCCGACGTGCGCGGCAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCTGGCCATCTACAAGGTGTGCACGCGGAGCCGGTGTTCCATCATGGACATCGTCGCCGGGCTGGATGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACGGACGGCG | |||||||||
gi|160712376|gb|EH407063.1|EH407063 RTHAIR1_6_G10.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6_ TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CCAAGGCCAGCATCAGACGAGGCCCAGGACGGCACCCCATCAGCTGAGCCCAACTGTCTGCTGCCCTGCCGCTTGGGCCGCTGGCTGACACATACACTGCCTTCGGTGGTGCCCCAACGGTTTTTGAGCAGGTGTCCTGCTTCTCCGGTCTGCCAGCACTGCCGTTCAAGAGACCAGTGAGCCTTGGGGACCTTCTGGCGTTCTTTTTTTTGAGAAGGAANCCANCGGGACAGNGAGGAGCAGGGTCTCACACCACAGCAGNNCAGNACTGGAGCTGACTCCAAATTGCAACTGGAACCAGGAAAATGACATGTTACAGATGTGGAACCCCCTAGGGATATGAGATAGATCTGTGTTGTTTCGTTGATAGTGGTTGTGAAGTGCTGTCCCAGGTCTGGAGTGCTAGTACTGAGTGTACATGCAGATTAAATTTGATTAGTAGTGTGACATACAGATTACAGATTAGATTATTCATTATTGGACTAATGGCTTGGCGTAGTATTTGTACATAGGATTGCTAATGAAGGAACCGTGT | |||||||||
gi|30936908|gb|CD206135.1|CD206135 HS1_20_E11.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_20_E11_A012 5', mRNA TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCTATTGGGTCGGCTAGTTTGGAAGGAGGAGAGCAGAGGACACAGGGGCGAGGCGAGGAGGAGAACAAGCTATGGGCGCGCCGAAGCAGAAGTGGACGTCGGAAGAGGAGGATGCGCTCCGCGCCGGCGTGCGCAAGCACGGCGCAGGCAAATGGCGGACCATCCAGAAGGACCCCGAGTTCAGCCCGGTCCTGTCCTCCCGCTCCAACATCGACCTCAAGGACAAATGGAGGAATTTAAGTTTCAGTGCAAGTGGACTGGGATCAAGTAAAGTACGGGTTCCAAGGATAACTGGACCCACATCTTCCCCATCGCCTAGTGCACAAGCTCTGCTTCTCCCAGCGCCAAATAAAGTAACTGAAGCTACACTGCCTGCAGATGCTGAGAAAAAGCCACAGGATGGGAAAACTCCGCCAAAGTATGGTGTCATGATCATGGAAGCTCTTTCGGAATTGAATGAGCCGAATGGTTCAGATATGGCTGCAATCCTCCGCTTCATAGAGGAAAGGCATGTGGTGCAACCGACCTTTAGAAGATTTCTAACCTCANAGTTACGGCGACTTGCAGACTCAAACAAAATTGTAAAGATCGATAAGTCTTATAGGCTCCCAGATTCCTTTGCAACAAGGACTCCAGCTCCAATAAAAGCTTCAGCTCCCAAACAGAAGGATCCATCANAGCCATCGAAGGTGTCAAAGACCATAGGATTATTTACTGCCTCCAGCCCTGCACTAGAGGCAGCGATGGCAGCTGCTGTCAAG | |||||||||
gi|30970584|gb|CD227150.1|CD227150 CCC1_4_C12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_4_C12_A007 TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): TGGACCCACTTCACTCCTCCCTCGCTTCAATCGATTCGGCGCTAGCGAGCGCCGAGCAGCAACGCCGCCCAAGAAGTGGAAGGGCACCTGCCAGTTCAGGTCGATCGCCGGCGGCGGGTGCAGCAACAAGGTTATTGGCGCGCGCGCGTTCGGGAGCGCGGCCATCAACAACACGGCGCCGCCCGTGGACGACGCCGGCCACGGCACGCACACGGCCAGCACGGCGGCGGGCAACTTCGTGCAGAACGCCGACGTGCGCGGCAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCCGGCCATCTACAAGGTGTGCACGCGGAGCCGGTGTTCCATCATGGACATCGTCGCCGGGCTGGATGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACGGACGGCGCGCAGTTCAACTACGACCTCATTGCCATCGCCACGTTCAAGGCCATGGAGCACGGCATCTTCGTCAGCGCTGCGGCCGGCAACGACGGCCCCACCGCGGGATCCATCACCAACGGCGCGCCGTGGATGCTGACGGTCGCGGCGGGCACCATGGACCGCGCGATACGCACTACCGTCAGGCTC | |||||||||
gi|13468792|gb|BG487557.1|BG487557 EM1_67_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGGCCGATCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGCCAAGTCGTCACCCGCCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAAGCAGCATGCCTAAGATAAAAACAAGCCGCGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAATATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGA | |||||||||
gi|31333896|gb|CD427633.1|CD427633 SA1_37_E08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_37_E08_A00 TGGAGAAGCAGGGCAC-GTGCA EST sequence (targeted fragment marked with yellow): CTTCTCGCCCCCAAACAGCCAAAAACCCCCAGGCGGCCAGGCCCCCAACCCTCGCCGCCGCCCTCCGCCAGCGCTGGGCCGACCTTCCGCCGGCCCAACCGCCTTGACCACGCCGCTCGCGCAGGCCTCTCACAATCTGGCGACGCAGCGCAGGCCGCCGCTGCTGGCACGGTGCCCTGCTTCTCCGGTCGCAGCATTCCCCCTCGCAACATCCCCGCTACGGAGTGTAACATCTACCAACACACAGTTACTAGCCATTCTACTGTTAGCTCTGAGCTCCTTTGGTTTAGCGGAACACCAATCATGGAATTGTTGACAGTCTTATTGTGGGGTTCAATGTCACAAACAGCCAAACAGGAAATATGGAAGTGAAAACCCTCCCTTGAAAATGCAATTTGTAACATTTCATCTATATCTTGTTATAGAAAGATCCATAGAATCTAAGATGCAAATAATCTTATCTTCCTTATTTATCCTGGATTGCCCTACCATTTGATCACACCAAGTTCCTCCCAAAGTGTCATTTCTATTTGGTTCCAATGGATCCTCG | |||||||||
gi|37704957|gb|CF755877.1|CF755877 DSAF1_2_A05.b1_A011 Drought-stressed after flowering Sorghum bicolor cDNA clone DSAF1_2_A05_A TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CAAGCTATGGGCGCGCCGAAGCAGAAGTGGACGTCGGAAGAGGAGGATGCGCTCCGCGCCGGCGTGCGCAAGCACGGCGCAGGCAAATGGCGGACCATCCAGAAGGACCCCGAGTTCAGCCCGGTCCTGTCCTCCCGCTCCAACATCGACCTCAAGGACAAATGGAGGAATTTAAGTTTCAGTGCAAGTGGACTGGGATCAAGTAAAGTACGGGTTCCAAGGATAACTGGACCCACATCTTCCCCATCGCCTAGTGCACAAGCTCTGCTTCTCCCAGCGCCAAATAAAGTTACTGAAGCTACACTGCCTGCAGATGCTGAGAAAAAGCCACAAGATGGGAAAACTCCGCCAAAGTATGGTGTCATGATCATGGAAGCTCTTTCGGAATTGAATGAGCCGAATGGTTCAGATATGGCTGCAATCCTCCGCTTCATAGAGGAAAGGCATGTGGTGCAACCGACCTTTAGAAGATTTCTAACCTCAAAGTTACGGCGACTTGCAGACTCAAACAAAATTGTAAAGATCGATAAGTCTTATA | |||||||||
gi|12691527|gb|BG157961.1|BG157961 OV1_15_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): GCACGAGGGCGGCACACGTGACCTGCTTCTCCGACGCACTGGAGGGCCACCAGTTCTTCAACCAGCAGCAGACGCCGCCAGAAGCCGACGCCACGGACCACCTCGGCCTCGCCGCCTCCTCGCCGTTCCTGCTGTCCGGCTTCGCGCATTACGGGCCGCTGCACCACGGCGCGACGAGCCTGGTGCAGCTCCTGGAGGGCAGCGTCGTGTACGCTGCCGCCGGCGGTGGCGGCCTCCCGGACATGTCCAACAAGCAGCAACAGGAGCCCGTGCCGGCGCCGACGTGCAAGGTGGGCGGCGAGCGGGAGCGGCTGAGCTTGTCGCAGGACACGGGGCTCACCTCCGACGTGAACCCCGAGATCTCCTCCTCCTCCGGCGCCCAACGGTTCGACCACGACCACCTCTGCTGGGGCTACTGATCGAGCCGCACATCATCGCGTACGTCATCGCTAGCGATTAGTATAGCACTGCTGGAAATAAGCACATCTACATCTGT | |||||||||
gi|57804517|gb|CX606720.1|CX606720 ANR1_4_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_4_C12_A002 5', mRNA sequen TGGAGAAGCAGGGCACGTGCA EST sequence (targeted fragment marked with yellow): CTCCACTCTCTCCCGGAAAAATCCATCCGTCCATAAAACCCAAAAAGTCTCATCAGGTTTAGTTGCAAAGCAGCGATCAAAAGCAGGCCTAGACGACGGCGATCCTCAGCTCAGTAGCCAGGCAGGAGATGGAGCACGACGTGCACCACCACCACCATCAGCAGCCGGAGGAGGCCATGGAGCTGCCGCCGGGGTTCCGATTCCACCCCACCGACGAGGAGCTCATCACGCACTACCTCGCCAGGAAGGCCGCCGACCCCCGCTTCGCCCCGCGCGCCGTCGGCGTGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCACCGGCACCACACGTGACCTGCTTCTCCAACACGCTGGAGGGCCACTTCCTGACCCCACCAACCTGCCTCCTCCCCTCCGCCGCCGCCACCGCCTCGCCGTTCCTGGCGAGCATGGCGCAGTACGACGGCGACGCGGGCGTGGGCGGCATGGTGCACGAGCTCCTGCAGGAGGCCGGCGGGTGGTACAGCAAGCTGGGCGAGAGGGAGCGGCTGAGCGGCGGCGCGTCGCAGGACACCGGCGTCACCTCGGAGGTGAACCCCGCCGAGATCTCCTCGACGCGGCACCACATGGATCACGAGGCCTCCTTTTGGGGCTTCTGATGAACTCCCCCGTCTTTTCCGTTATCGTTAAAAAATTGGATTAGAATTAGTCACTGGATTGGAAATGGAGATTGTATTGTGCTATTGAATGAATACTGTTATGTGCAAATGGGGCAAAAAAAAAAGTTGTGAACAAA | |||||||||