| mature miRNA: TGGAGAAGCAGGGCACGTGCT species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|197957010|gb|FL699795.1|FL699795 CCGA6481.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA6481 5', m TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCCAATCTAGCTCATCTAGCATTCCATTTTTGCTTCAGTTGTTCGCAGTGCCTCATGAGGAGGGGCGAGCAAACCCCTGCTGGAGAAGCAGGGCACGTGCTTGGTCGATCGGCCGGCAGCCCGCTGCATGTGTGCATGGTCGATCGCAGCACGTGCGCTCCTTCTCCATCATGGATTCTCGCCCCGTCGATCCATCTCGGTTCGAACGCCCCCTAATAAGCTAATGGGTGGGAGAGCTAGCTCGATCTCATCAGCCAGCGGCGGATCGACGGCGGATGCGTTGTTGGTAAGAAAACACAGCACACAGGTGCTCCATTTCTTGGTTAGGCAGGAATTCTTAGATGAGATGAGAGTAGCTGGAAACTAAAGGTTGGTGGTGGTCAGTGGCAAGGTCATAGATGGTGCTCGACGAATCCTTGACTTAGACATTTGTCATTGGAGCTCGTTGAAACTTCCATGAAATCTTTAATTCTTGTGTGGTCGCAATCTTTTTTCGCTAGTAGGTTGTCCAAAGTAACACTAAGACGCATCGATTTGAACTGCTTCACCTGAAATTGCCAAGTGGCGCCGTATTATATGACCATTCTCCTGTAGAATTAAAGTTGAATTCCTGGTCTCTGCGATTAGGCACCTTTTTTCAGCTTTGCATAAAGAAATGGTTATTTTTCTACAGAAAGCTGTCATTACAAGATTCTTTTTAAGGAACTACACAAATTTTCAGTCTACCCCAATGTAAGGTTCACTCGGTGGCC | |||||||||
gi|198143237|gb|FL858626.1|FL858626 CCGI5441.g1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI54 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CAAGGATGAAGATTGGGTCCTGTGCAGAGTCATCTGCAAGAAGAAATTACCAGGAGGAGGCGCCAGCTCCAAGGCATCAAGAAGCCTCGCCACCAATGGCGGCCACGACACCGCACCAACCAGCTCGCCGCCGCTGCCACCCCTCATGGACGCCACCCTAGCACAGCTCCAGGCCGCCATGAACACTACCGCCGGCACCGGCGCAGTCGAGCAGGTGCCCTGCTTCTCCAGCTTCAACAACATCGCCAGCAACAGCAACAGTGCCGCTGCAGCAGCAGCTCAGCCATGCTACCTGCCTATGGTCACTGGCAGCCATGGCATGAGCTTCCTGGACCATGGCCTGCCTGAGCTGGGCGGCTGCTTTGATCCTCTGAACTGCGACCAGAAGTTGCTCAAGGCCGTTCTGAGCCAGTTCGGCGGTGAGGTGGTGCCAACCCTGCCGCATGAGATGGCTGCTGGTACTGCGACCTCCACTTGGATGAATCACTTCTAGGGAAATTGATTGAGCAAGCACAAGTGATTGGTGATTCCATATAAACTATATTTACTTATTGTGTGGTACAACATTTATGTGAGAGTAGTAGATCAAGCATTTTTTTTTCTATCGATTTCGATAAGGCAAGCGAAAATTAGGAGTGAGACTCTGTAATGGCTGTTGAAGTGTGTATATTCAGATGTAGGGGGTTTGAGTGATCAAGAGAATTCCAGATTGATT | |||||||||
gi|198073683|gb|FL799692.1|FL799692 CCGG2628.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CTGCCCTTTTTTTTTTTTTTTGTAAAAGGTTTCCCATCCGATATCTTTTTTTCAGCTGGTGTAATAACTTTTTTCACTATTCGGGGACAAGGATCATACAACCTTCTTCCTAGCGAAGGAACAAAGGAGGCTTTTTCGCCTTCCTTTTTAACTTGTCATCACCAAACTGTCTATCAACAAAAGGATTAAGGTGCATGGACAAAAGGTAAAACAAAAAGGATATCTGCAGCACACAACATTCTTCGCAACAACACCCACTCGGCCTGACGGAAGGGAAGGGCAGGGCAGCACATCCCGCAGCTGCCGCTCTAGGGTTGCTTTATCGTCAGCTCAGCTCTCAGGTGCAGCATCCCGTCGATGAAGAAGAGGCTGTCGTCGGCCATGAACGTCTGCCATGGGATAGCAAAGAGATTCCTGTACCCGACTGCCTTCCCACCAGTGAAGGTGTAGTTGCCCTTGTACTTGCTGACAAACTCGCCGGAGGGTCTCGTCCTCGCAGCAAACTCATAGTCCACTGTCACGCTCATTGAGCCCTTCTCTTGCATCCCTAGGAAGAGGCCAAAGCAGTAGAACGTGCTCTGCTGCTCCATGTTACAGTGGGCTGAGAGGAAGAAGCCTTGCCCTGCGAGATGGAATGCTTGAGAGTATATCCGGGCCTGATGGGAAGAGTCGAGAGCACTCCTCACGCTTGAGATCCAAGTATGCTATGCACTGTGGGTAGGGCCGATCAACTCACGACTTTCAGAGGTCTGTACTTGTAGCCCGCTC | |||||||||
gi|169690128|gb|FE618575.1|FE618575 CBYY1560.b1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY1560 5', mRNA TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): TGGACGTGCTCTCCTTCTCCATCAGCGCCACCGATGGCGCGCAGTTCAACTACGACCTCATCGCCGTCGCCACGTTCAAGGCCATGGAGCACGGCATCTTCGTCAGCGCCGCCGCCGGCAATGACGGCCCCGTCGCCGGCACCATCCGGAACGGCGCGCCGTGGATGCTGACGGTGGCGGCCGGCACCATGGACCGCGCGATCCGCACCAGCGTGAGGCTCGGCAATGGGCAGGAGTTGGACGGCGAGTCCCTGTTCCAGCCCCGGAACAACACCGCCGGGCGCCAGCTCCCGCTCGTGTTCCCGGGCCGCGACGGCGACCCGGACGCCCGCGACTGCAGTACGCTGGTCGAGGCGGAGGTGCGCGGCAAGGTGGTCCTCTGCGAGAGCCGGTCGATCAGCGAGCACGTCGAGCAGGGGCTGATGGTGTCGGCGTACGGCGGCGCCGGCATGATCCTGATGAACAAGGCGGCGGAGGGGTACACCACTTTCGCCGACGCCCACGTGCTGCCCGCGTCGCACGTGAGCTACGCCGCCGGGTCAAAGATCGCGGCCTACATCAGGTCGACGGCCAAGCCGACGGCGAGCATCAGCTTCCGGGGCACGGTGATGGGGTCGTCCCCGGCGCCGTCCGTGGCCTTCTTCTCGTCGCGCGGGCCGAACAAGGCGAGCCCGGGCATCCTGAAGCCGGACATCACGGGGCCCGGCATGAAC | |||||||||
gi|198075371|gb|FL802314.1|FL802314 CCGG4057.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GTCCGAACCTTGGGACCTGCCGTCGCTGGCGAAGATGGGGGAGAAGGAGTGGTACTTCTTCTGCCTCAAGGACCGCAAGTACCCAACGGGGCTGAGGACGAACCGGGCCACGGAGGCCGGGTACTGGAAGGCCACGGGCAAGGACAAGGACATCTTCAGGGGCAAGGCCCTCGTCGGCTCCAAGAAGACGCTCGTCTTCTACACGGGGAGGGCGCCCAAGGGCGAGAAGTCCGGCTGGGTCATGCACGAGTACCGCCTCCACGGCAAGCTCCCCGGCGCCGCCATGCTCAAGGCCGCATCGTCCAAGAACGAGTGGGTTCTGTGCAGGGTGTTCAAGAAGAGCCTTGTCGTAGGTGTGGCGCCAGCACCCAAATGGGGCGCCGTGGAGATGGACGACGTGGCAGCCATCTCCCACCTCCCTCCGCTGATGGACATGTCGGCCGCCGCCGCCGTAGGCAACCCCGCCGCGGCACACGTGACCTGCTTCTCCAA | |||||||||
gi|198056246|gb|FL783862.1|FL783862 CCGF12532.g3 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): TCTCGCATCCACGGGCGATTCTTCGCATCCACCGTGCGCATTTCTGGATCCGGGCGGGATTGGAGGGGAGATGAAGGAATGCATCGGCGAGATTGAAGCAAGGGGAGGGGGAAGCGCAGAACCCGATCAAGGGGAGATTCCGGATGCGGCGGCGAGCAACGGCGGGCTGCTTTACCACGAGGTTCATGAGGGGAAGCCCTGCGTCGTGCACTGCGTCAACACCTCCCTGCACGGGCCCTTCTTCTCCGTGTTCGACCTCGCCGCGCTCGCCGCCGACCTCGACCAATGGGAGCGCCTCATCATCCTAAAGCCTCGGCGCGGCCAATGCTGCTGGTGGGGACTTCCTCACCAAAGGATCCCAAAACATCTCCCTCGGAGTGATTTCACCATCCAAGCTCACACAAATCTGATGATGGTGTTGGTCAATATTTTTTTGGTGCTGGAGAATGAGACCTGAAGATTTATTTTGTTTGAATGTTTGGATGGGTGAAAATTACCTTTGTATATGCTTTAATTTTCTTAGAGTTCTTCATAAATTTGCATAATTGGTCTCAAAAAGTTGCTTCATGTAACCATTGAGTTGAATGGCAGTATTGGTGAAGTAGAAATAATGTAACGTGAGCAGATTAGGAGGGGTGGTGGTGGTTGTAATTCTAGTAGATTTTTTTTGTGATACTACCTTTTTTATATACTTTTTGATGTACCCACTTAGTGACTTCTAAATATGGAAAGTAGTTTTTTTATTC | |||||||||
gi|198143312|gb|FL858649.1|FL858649 CCGI5453.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI54 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGAGCGCAAGAACTATGTGGTTCATCTCGAGCCGAGAGAGGACGGCAGCACCGATTCGGTCGAGGAGTGGCACCGGTCCTTCCTGCCGGAGTCCACGCTGGACTCGGCGAGCGACGACGGCCCCAGGATCATACACTCGTACAGCCACGTGCTGAACGGGTTCGCCGCCCGCCTCACCGACGCGGAGGCGGAGAGTCTCAGGAACAGGGAGGGGTGCCTGCGCCTGTACCCCGAGGAGTTCTTGCCGCTCGCGACCACCCACTCGCCGGGGTTCCTCGGCCTCCACCTCGGCAAGGACGGCTTCTGGAGCCGCTCCGGGTTCGGCCGGGGCGTTGTGATTGGGCTCTTGGACACCGGGATCCTGCCCAGCCACCCGTCCTTCGGCGACGCCGGCCTGCCGCCGCCGCCCAAGAAGTGGAAGGGCACCTGCGAGTTCAGGTCGATCGCCGCCGCCGGCTGCAACAACAAGGTCATTGGCGCGCGCGCCTTCGGGAGCGCCGCCATCAACAACACCGCCCCGCCCGTCGACGACGCGGGCCACGGCACGCACACGGCGAGCACGGCGGCGGGCAACTTCGTCCAGAACGCCGGCGTGCGCGGGAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCTCGCCATATACAAGGTGTGCGCCCGGAGCCGCTGCTCCATCATGGACATCATCGCCCGTCTGGACGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACCGATGGCGCGCAGTTCAACTACGACTCATCGCGTC | |||||||||
gi|304521998|gb|HO316999.1|HO316999 CFHA5061.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA5061 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGTGGAGACGACGGCCAACTTTTCTGCCTGTTGTTCCTCTGCCTTTGGTCTCTTGATTCTAGTGACGGCGGCGACGGTGAGTCTGCTGGGATCTGTGGAGCTCTGGCTGGGAGAATTTTGTTGCCACTGGTTTCCTCCGGTGCTGCTGCTCTCGTTGGTGGCCCTCCGGTTGAAGATTCAGCGTGGAGGTATGTGCTCTGCTTCTTCCAGGAGATGGAGCTGTGGTGCTTCCCTATGGGTAGCTTCCTTTTTCGGGTCGATGGCTTTGTCGTCGGCTGCGGATTTATCTACCGAGCGGGCTGCTTTGGTCTTCCATCGTCATCCGCTGCGGTTTCTGTTCGAGGCGCCTTGGGTTT | |||||||||
gi|198072021|gb|FL802153.1|FL802153 CCGG3977.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGTGTAATAACTTTTTTCACTATTCGGGGACAAGGATCATACAACCTTCTTCCTAGCGAAGGAACAAAGGGGGCTTTTTCGCCTTCCTTTTTAACTTGTCATCACCAAACTGTCTATCAACAAAAGGATTAAGGTGCATGGGCAAAAGGTAAAACAAAAAGGATATCTGCAGCACACAACATTCTTCGCAGCAACACCCACACGGCCTGACGGAAGGGCAGGGCAGCAGATCACGCAGCTGCCGTGTCGCTCTAGGGTTGCTTTATCGTCAGCTCAGCTCTCAGGTGCAGCATCCCGTCGATGAAGAAGAGGCTGTCGTCGGCCATGAATGTCTGCCATGGGATAGCAAAGAGATTCCTGTACCCGACCGCCTTCCCACCAGTGAAGGTGTAGTTGCCCTTGTACTTGCTGACAAACTCGCCGGAGGGTCTTGTCCTCGCAGCAAACTCATAGTCCACTGTCACGCTCATTGAGCCCTTCTCTTGCATCCCTAGGAAGAGGCCGAAGCAGTAGAACGTGCTCTGCTGCTCCATGTTACAGTGAGCTGAGAGGAAGAAGCCCTGCCCTGCAAGATGGAATGCTTGCGAGTATATCCGGCCTGAAGGGAAGAGCCGAGAGCACTCCTCACGCTTGAGATCCAAGTATGCTATGCACTGCGGGTAGGGCCGATCAAACTCAACGACTTTCAGAGGTCTGTACTTGTAAGCCCGCTCGGCGAATTTCCGACATGTTACTGTGTCCGCTGCAAGAACTCGTTGCCTGTGCGGTGCAT | |||||||||
gi|198236349|gb|FL952665.1|FL952665 CCGP18176.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP18176 3', mRNA s TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CCGACCGCGCTTCGCCCCGCGCGCGTCGGCGAGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCCGCTCGGGCGACCATGGGGGAGAAGGAGTGGTACTTCTTCTGCGTCAAGGACCGCAAGTACCCGACGGGGCTGAGGACGAACCGGGCCACCGAGTCCGGCTACTGGAAGGCGACGGGCAAGGACCGGGAGATCCTCAGGGGCAAGGCCCTCGTCGGCATGAAGAAGACGCTCGTCTTCTACACGGGGAGGGCGCCCAAGGGCGGCAAGACCGGCTGGGTCATGCACGAGTACCGCCTCGACGGCAAGCACGCCGCCGCCGCCGGCAGCAGCCGCCGCCTCATCCCCTCGATCAGAGCTGGCGCGTCAAAGGACGAGTGGGTACTGTGCCGGGTGTTCAAGAAGAGCATCGAGATTGAGCCGCCAGTGGTGGCTGCAGGCGGCAAGAGGTCGCCGTCAGGCGCCGCATGCACGGAGGTGGCGGACGTCGTGGGGCCGTCCGTGTCCATGGCGGACGACCTCGCCGCGTGCGCGCTGCCTCCGCTGATGGACGTGTCCGGTGGCAGCGGCGCCGCCATGTCGCTTTCAGCTGCTGCTGCGGCGGCGGCGGGCATCGAGCTGCCGCCGCCGTCGCAACACGTGACCTGCTTCTCCAACGCGCTGGAGGGCCAGTTCCTGAACCCACCCTTCGGCCTGCTCCCCGCTGCGGGCCCC | |||||||||
gi|197955325|gb|FL699197.1|FL699197 CCGA6185.b1 CCGA Panicum virgatum apex + stem (H) Panicum virgatum cDNA clone CCGA6185 5', m TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGTGATTAGACAAATTGTGCTTAATGCAGATCCACAGCTTGAGGTTTTCTTAAGACTTCTGAGAAGCAACGAGTTGTTCCTGAAGGCCGCTATAGTGCTCTATATGATGAAGCCTAAAGCTAAGCAGATGCTATCATTGGACTGGATACCACTAGTACTGCACATATTGGAGTGTGGTGATGAGGTGCAATCTCTGTCTTCTGTAAAATGCGCACCAAAAATTGCTGCGTTCTATTTCCTAGATCAGCTTCTTATGGGGTTTGATGTCGATAGAAACATTGAGAATGCAAAGCAGATGATTGCACTAGGTGGTTTGGACCTCCTCATTAGCAGACTTGAAGCTGGTGATGCTCGCGAGAGCCGACACTGCATTGCTCTCTTGACCACATGTATTCGAGCTGATGGCAATTGTAGACACTACTTAGCCGATAATCTGAAGAAGGAACCGATTGTTCAACTTCTTGTTGGAAATCAAAAGAAGGCTAGTGCTGCAGCCCTTAATTTGATGAGTGAACTGGTCTGCCTTAATAGAACAACCAAAATTGTGGAGTTCCTCAGGGAGTTGAAAAATAGTGGCTGCTTGAATACAATGCATATTCTGCTGGTCTATCTCCAGCAGCTCCTCTTGTCCAGCATCCACTAGCAGCTGTCCTGCTACTCCAGCTTGATCTCCTGGGCGATCCTTTGCAGTACAGCGTATACAGAGAGGAGGCGATTGATGCCATGATAGCTGCTTTGGAGCAGAGTTCACAGAGCAGAAAGGTCCAAGAACAATGTGCTCGTGCGCTTTTATCTGGCTGGGCGGTTTTCTT | |||||||||
gi|304470159|gb|HO267205.1|HO267205 CCTY4143.b1 CCTY Panicum virgatum Kanlow normalized leaf Panicum virgatum cDNA clone CCTY414 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): AAGGGTTTGACTCTCCAGACGACAAATTCTTTACTCCAAATTGCCAGTTGAACACAGTGGTTTCTATGATTGCACTTCCTCAAGTAATTAACTTCCGAAAAATAAGTTTTTAAATACAACTTATTACAGAGAGTTGTCATGTTGTATCCATCAGCATTATGTAACAGGCTACTGATAACCATTGAGAATTCAGAATGAAATACTGTAGCCCTCATCTTCAACCTACGACAAGGATTCTACTTTATCCAATGAAATTGTGCTCAACTGCAATTGATACAATTTATCCATTTCATATATCCCTTAAACTCACTATTTGAACTCTAACATGTATCTGCAAAATACAGGAAGACTGGGTGCTTTGCAGGGTGTTCTACAAGAGCAGAACAACCAACCCAAAGCTACCATCTGAGGATGCCCAGGACGGCACCCCATCAACTGAGCCGGACCTGCCGGCTTCCCTGCCGCTTGCACCCCTTACTGACACCTACACTACCTTCAGCGCCACCTCGACGGTAACCGAGGAGGTGTCCTGCTTCTCCGGCCTGCCAGCACTGCCGTTGAAGAGACCAGTGAGCCTTGGTGACCTTCTGGTCTTTGATACCTCTGACAAGGTATCCATCGGACAGTGATGCTGAGCAGCATGCCAAGCAACAGCAGTTCAGTACTGGAGCTGCCTCAAAATTGC | |||||||||
gi|198223167|gb|FL933386.1|FL933386 CCGP6010.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP6010 3', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CAGAGGTCGCCGTCAGCCGCCGCATGCACGGAGGTGGCGGACGTCGTGGTGGGGCCGTCCGTGTCCATGGCGGACGACCTCGCCGCGTGCGTGCTGCCTCCGCTGATGGACGTGTCCGGTGGCAGCGGCGCCGCCATGTCGCTTTCAGCTGCTGCTGCGGCGGCGGCGGGCATCGAGCTGCCGCCGCCGTCGCAACACGTGACCTGCTTCTCCAACGCGCTGGAGGGCCAATTCCTGAACCCACCCTTCGGCCTG | |||||||||
gi|198211633|gb|FL924649.1|FL924649 CCGP1138.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP1138 3', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CCATGCCCAATGCTGCATCGTCCAAGAACGAGTGAGTTCTGTGCAGGGTGTTCAAGAAGAGCCTTGTCGTAGGTGTGGCGCCAGCACCCAAACGGGGCGCCATGGAGATGGACGACGTGGCAGCCATCTCCCACCTCCTTCCGCTGATGGACATGTCCGCCGCCGCCGCCGTAGGCAACCCAGCCGCGGCACACGTGACCTGCTTCTCCAACGCGCTGGAGGGCCAGTTCTTCAACCAGACGGCGGCGCCGCAAGCCGCCGCCTCTGTCACGGACCACCTCGGCCTCGCCTCCTCCTCCCCGTTCCTGTCCAGCTTCGCGCAGTACGGGTCGCTGCACCACGGCGGCGTGAGCCTGGTGCAGCTCCTGGAGAGCAGCGGGTACGGCGCCGGCGGCGGCAGCCTCCCGGACATGCCCAAGCAGCAGCAGCACAAGTGGGGCGGCGAGCGGGAGCGGCTGAGCGCGTCGCAGGACACCGGGCTGACCTCCGACGCGCACCCCGAGATCTCCTCCTCCTCCGGCCAACGATTCGAGCACGAGCAGCTCTGGGGCTACTGAGCAGCAGCACGAGCTTCTTCACGCACCGCGTTAATGGCGGTCACAGTATAGAGCACTACTGTAAATAAACATCTGTTGCAACCTCGATCGTGGCGTGCGTCGAGCTACGCGTTCCAATTATTTGTTCGTGTGATTGTAGTTAGCCGATTTGGGGGTGTAATTAGCGCTTGTGTAAGCACGATTTGGTGCAAGATTTCCCTGGT | |||||||||
gi|59866603|gb|DN145746.1|DN145746 4836_F05_L10 Switchgrass stem cDNA library Panicum virgatum cDNA clone 4836_F05_L10 5', mRNA TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGACGTGCTCTCCTTCTCCATCAGCGCCACCGATGGCGCGCAGTTCAACTACGACCTCATCGCCGTCGCCACGTTCAAGGCCATGGAGCACGGCATCTTCGTCAGCGCCGCCGCCGGCAATGACGGCCCCGTCGCCGGCACCATCCGGAACGGCGCGCCGTGGATGCTGACGGTGGCGGCCGGCACCATGGACCGCGCGATCCGCACCAGCGTGAGGCTCGGCAACGGGCAGGAGTTGGACGGCGAGTCCCTGTTCCAGCCCCGGAACAACACCGCCGGGCGCCAGCTCCCGCTCGTGTTCCCGGGCCGCAACGGCGACCCGGACGCCCGCGACTGCAGCACGCTGGTCGAGGCGGAGGTGCGCGGCAAGGTGGTCCTCTGCGAGAGCCGGTCGATCAGCGAGCACGTCGAGCAGGGGCAGATGGTGTCGGCGTACGGCGGCGCCGGCATGATCCTGATGAACAAGGCGGCGGAGGGGTACACCACTTTCGCCGACGCCCACGTGCTGCCCGCGTCGCACGTGAGCTACGCCGCCGG | |||||||||
gi|198191466|gb|FL903663.1|FL903663 CCGO1551.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO1551 5', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CTCGTACAGCCACGTGCTCAACGGGTTCGCCGCCCGTCTCACCGACGCGGAGGCGGAGAGTCTCAGGAACAAGGAGGGGTGCCTGCGCCTCTACCCCGAGGAGTTCTTGCCGCTCGCGACCACCCACTCGCCGGGCTTCCTCGGCCTCCACCTCGGCAAGGACGGCTTCTGGAGCCGCTCCGGGTTCGGCCGGGGCGTGGTGATTGGGCTCCTGGACACCGGCATCCTGCCCAGCCACCCGTCCTTCGGCGACGCCGGCCTGCCGCCGCCGCCCAAGAAGTGGAAAGGCACCTGCGAGTTCAGGTCGATCGCCGGCGGCGGCTGCAACAACAAGGTCATCGGCGCGCGCGCGTTCGGGAGCGCCGCCATCAACAACACCGCGCCGCCCGTCGACGACGCGGGCCACGGCACGCACACGGCGAGCACGGCGGCGGGCAACTTCGTCCAGAACGCCGACGTGCGCGGGAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCTCGCCATATACAAGGTCTGCGCCCGGAGCCGCTGCTCCATCATGGACATCATCGCCGGGCTGGACGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACCGACGGCGCGCAGTTCAACTACGACCTCATCGCCGTCGCCACTTTCAAGGCCATGGAGCACGGCGTCTTCGTCAGCGCCGCGGCCGGCAATGACGGCCCCGTCGCCGGCACCATCAGCAACGGCGCGCCCTGGATGCTGACGGTGGCGGCCGGCACCACGGATCGCGCGATCCGCACCAGCGTGAGGCTCGGCAAC | |||||||||
gi|304468249|gb|HO266414.1|HO266414 CCTY3729.b1 CCTY Panicum virgatum Kanlow normalized leaf Panicum virgatum cDNA clone CCTY372 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): TTCAACTTCTTGTTGGAAATCAAAAGAAGGCTAGTGCTGCAGCCCTTAATTTGATGAGTGAACTGGTCTGCCTTAATAGAACAACCAAAATTGTGGAGTTCCTCAGGGAGTTGAAAAATAGTGGCTGCTTGAATACAATGCATATTCTGCTGGTCTATCTCCAGCAGGCTCCTCTTGTCCAGCATCCACTAGCAGCTGTCCTGCTACTCCAGCTTGATCTCCTGGGCGATCCTTTGCAGTACAGCGTATACAGAGAGGAGGCGATTGATGCCATGATAGCTGCTTTGGAGCAGAGTTCACAGAGCAGAAAGGTCCAAGAACAATGTGCTCGTGCGCTTTTAATCTTGGCTGGGCGGTTTTCTTCTTCAGGAGAACCCATAGCAGAAGCATGGCTACTAAAGAGAGCAGGTCTAGACGATTCCCTCTTTGAATCCTTTAGGAGAACAGAGATATTCAAAGATAAGAGCGTTCGAGCGGAAGAAGAAAAGGTGGTTGAAGAACGTCTGAAGAAACTTGCCTCAATGTTATTGAACAGTGGGGGCAAAAGGTTCCTCATGGCACTGTCAAACTGCATATCCGATGGAATCCCGAGTCTGAGTCGATCCTGTCTCATCACCATAACATGGATGAGCAGCTCCCTCTCACCACTGCGTGATGCAACGATTTCCAGCCTCTAGCATGCTCAT | |||||||||
gi|304525283|gb|HO326370.1|HO326370 CFHB5136.g1 CFHB Panicum virgatum U418 normalized leaf Panicum virgatum cDNA clone CFHB5136 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CATTTGGAGCTGACCGTGCATGGGATCAGCGTTGACGACGACAATCGCGGCGAATGAACGAACGTGTTTCTACGCGTTCGTTGACAAGGCAGGAGAGAAGGTTGGCTTCTATTTCGCTGTTCAATCAGGAGGATCTTTCGACATTGACTGGACAGTCACCGATCCCGCCGACACGATCGTGCTCGAAGGGGAACGAGAACGCCAAGGCGACTACATCTTCACCGCGCATTTGATCGGAGAGTACGCCTTCTGCTTCTCCAACGACATGTCATCCTTCTCGGAGAAGCTCGTCGACTTTGACATCATGGTCGAGTCGGAACCGCGACCGGTCGCGCCGGCGAAACCGACCGCGTTGACGGAACAGACGTCGAGTCTGGAGGAGAGCATCTACAAACTGAGTGGCAGCTTGAGCAGCATCCAGAGAACCCAAAAGTACTTCCGCACGAGAGAGAACCGGAACTTGAGCACGGTCAAGAGTACACAATGGCGCATGTTCGCTTTCAGTATCAGCGAGAGTTTGCTCATGTGCGGCATGAGCGCGTTCCAGGTCTGGGTGGTGCAACGATTTTTCTCGGGACCTTCACGACGCCGACAAGTCTGAGGAAGGGAAGGAGACAAACCAGGAAAACTCGCTGGAGGAGGAGGGAGGACATGATTTGGCAGGGGGAAGTGGCCATTTATGTACCGGACCTTGTATCGATGGTTGGACTTCTCTTGTACATCGCCAATCGAACGTCGTTTTCTCGCG | |||||||||
gi|198225024|gb|FL932877.1|FL932877 CCGP5655.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP5655 3', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGCCCTCGTCGGCTCCAAGAAGACGCTCGTCTTCTACACGGGGAGGGCGCCCAAGGGCGAGAAGTCCGGCTGGGTCATGCACGAGTACCGCCTCCACGGCAAGCTCCCCGGCGCCGCCATGCCCAAGGCCGCATCGTCCAAGAACGAGTGGGTTCTGTGCAGGGTGTTCAAGAAGAGCCTTGTCGTAGGTGTGGCGCCAGCACCCAAACGGGGCGCCATGGAGATGGACGACGTGGCAGCCATCTCCCACCTCCCCTCCGCTGATGGACATGTCCGCCGCCGCCGCCGTAGGCAACCCCGCCGCGGCACACGTGACCTGCTTCTCCAACGCGCTGGAGGGCCAATTCTTCAACCAGACGGCGGCGCCGCAAGCCGCCGCCTCCGCCACGGACCACCTCGGCCTCGCCTCCTCCTCCCCGTTCCTGTCCAGCTTCGCGCAGTACGGGCCGCTGCACCACGGCGGCGTGAGCCTGGTCCAGCTCCTCCGGGACATGCCCAACCCCCAGCAGCACAAGGGGGGCGGCGAGCGGGAGCGGCTGAGCGCGTCGCAGGACACCGGGCTGACCTCCGACGCGCACCCCGAGATCTCCTCCTCCTCCGGCCAACGATTCGAGCACGAGCAGCTCTGGGGCTACTGAGCAGCAGCACGAGCTTCTTCACGCACCGCGTTAATGGCGGTCACAGTATAGAGCACTACTGTAAATAAACATCTGTTGCAACCTCGATCGTGGCGTGCGTCGAGCTACGCGTTCCAATT | |||||||||
gi|304535077|gb|HO335452.1|HO335452 CFHC4692.g1 CFHC Panicum virgatum U518 normalized leaf Panicum virgatum cDNA clone CFHC4692 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): TAGCTTACTTTGCTGGCATCATACTTGTGTTCCTGCAAATCGCGCCGGCGCCACCCGCACTAGTGTCACCAGTCGCGCTGAGGCTGCTCATGGCATGTGCCCTGCTTCTCCTCCTTGCCACCACGCCCCTCCTCCTGCCTTGGCTGTTCAGTATGTGAGTGCTTTGTCAAACGGCGGAAACAAATTGTTTGGAGTAGGGAGGGTCCATATATATGAATAAGTTCAATGCTGCGATGCATGTGTGTTGTGAGGCCTCTGTATACAATAATAAGGTTTTGTAAGGTGCTGGTGATGACGTGGGTAACTGAAGCTATGATCTCCACCTGAACATCGGCGAGTCGACCACCAAGTTTCTATATTCTTGTTCTTGCTCTGTCGGAGAACTCCAGCATCCCGGTTGCTTGCAGTGATCCGGGTGGTCCTCGTTTCCTGCTGGGCGTTAAGGAAGATGAAAATTAAGCATGCGTGAGGATACTATTTAAGCATCGACTCTGTGGACCCGGTGGATTTGTTGAATCTCAGCTGCACGTATACGTAATGTATCATGTATGTATTCATGTGTGTAAACTTCACTTGTACTGCACTACTTATGTTTTTTTTTGGCTACTTATGTTAAAATGTTGAATTTCCC | |||||||||
gi|198192409|gb|FL907726.1|FL907726 CCGO4758.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO4758 3', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CGCAGCAGCCAGACCGGGCGCCATGGAGATGGACGACATAGCAGCCATCTCCCACCTCCCTCCAGTGATGGACGTGTCCGTCGCCACCGCCGTCGCCGGAGGCAACCCCGCCGCGGCACACGTGACCTGCTTCTCCAACGCGCTGGAGGGCCAGTTCTTCAACCAGACGACGGCGCCGCCGCAAGCCGCGGCCTCCGCCACGGACCACCTCGGCCTCGCCTCCCCCTCCCCGTTCCTCTCCAGCTTCGCGCAGTACGGGCCGCTGCACCACTGCGGCGTGAGCCTGGTGCAGCTCCTGGAGAGCAGCGGGTACGGCGGCGGCGGCCTCCCCGACAAGCCCAAGCAGCAGCAGCAGCCGGAGGCCCCGACGTGCAAGGGGGGCGGCGAGCGGGAGCGGCTGAGCGCGTCTCAGGACACCGGGCTCACCACCTCCGACGCGCACCCCGAGATCTCCTCCTCCTCCGGCCAACGATTCGACACCGAGCAGCTCTGGGGCTACTGAGCAGCAGCACAAGCTTGTTCACACACCACGCGTCAATGGCGATTAGTATAGAGCGGTACTGTAAATAAACATCTGTTGCAGTCGGTCGTCGCGTGCATCAAGCAACGCGTCCCAATTATTTGTTCGTGTGATTGTAGTTAGCCGATTTGGGGGTGTAATTAGCATTTGTGTAAACACGATTTGGTGCAAGGTTTCCCTGGTTAATGATG | |||||||||
gi|198190095|gb|FL906497.1|FL906497 CCGO4012.b1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO4012 5', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGCGTGGGCGGCGGCGCCGCCTCCCCGCCGGTCCACGGCGGCCAGCACGACGCGACTAGCGCGCCGCCGGGCAGCGGGTACGGCGGCCACCACCAGAGCTACGCCGTCGACCCGAGCCCGAGCACGTCGACGTCCGGCTGCTCCGGCTCGACGCCGGCCGCCGCGCTCCCGCCAGTGCCCTGCTTCTCCGAACTGAGCTGGGTCGTCGACCAGTACGGCCCCTACGCCGACCTCGACGGCGCCGGCGCGTTCGACTCCTCGGCGCTGGGGAGCGGCGGCCTGGACGGGCTGGACCTGGGCGCGGCCGACGGCGACGTCTACCCGGACTCCACGCTGCTGGACTACCTCAACTCGGCCTGCACCGGCGGCGGCGCCATGATGACGATGATGGGCGGCGGTGGCAACGCCGCCCTCAGCAGCTGCGGCGGCGCCATAATGGGCGGACACGACGGCGACTACGGGCCGTCGTCGTGGCGCACGGACGAGCTCTGCCAGGCGGCGGCGAGGAAGCTCGGCGATCATCATCAGTGGGGAGGAGGAATCTAGAAGCAAGCTAGCTCGCTAGAGGCATGATGGGTGCAGGTTGCTTCTTGCCACGCCTCTCTCCTAAAGCTAGCTAGCGATGATCGGGATGTCACACTAGTTAACTATATATCTAGTGGAGCTAAAGCTAGCAGCCAGTAGTCGATCGAGATACCAATTAATTACCAACGCTTATTAGACGTCTCAGACGATGATCCATCGATCGAGCGCTCGAGATTCAGCCAGCTAGCTAGCTGTATTTGATCATCCATATGGTTTGTTG | |||||||||
gi|198221841|gb|FL937326.1|FL937326 CCGP8499.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP8499 5', mRNA seq TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCCTGGCTCAGTGCAAAACCTAGAGGGTTATGAGCAAGTGCCCTGCTTCTCCAATAATCCCTCTCATCAGCCATCGTCATTGATGAACGCTCCGCTGCCGTCATCAGCTATGGATGATCATCAGGAGCAGCATATGGGGAAGTCAATCAAGGATGTGCTCATGAGCCAGTTCAGCAGGTTCGACGGCAACGTGAAGAGGGAGACGCCTCAACAAAGTAATTTCTCTCAGGATGGGTTCGAGTACTTGGCTGAGAGTGGCTTCACGCAGATGTGGAACTCATTCGGTTAATCGATTTATAGGAAGATTATTGCAATTAACAGAGGATGATACGAAATTCCTCGGGAATGAGGAAACAAAAAGGAGGATGCATGAGTAAAGAGGACTTGGGTGTGTGTGATTCCTGTGTGGTATTGCATGTAGCTGTAGTAGATACCTAGTAGTATATACATTTATCAACAAGAAAAGAGATATATGTATATGCCAGCAATGATGTAAATACATTATTTGTGAACTATATATATGGAGAAAATAGAAAAATTAGTGCGTGATGAC | |||||||||
gi|169690055|gb|FE620302.1|FE620302 CBYY2756.g1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY2756 3', mRNA TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CGAGCCCGAGCACGTCGACGTCTGGCTGCTCCGGCTCGACGCCGGCCGCCGCGCTCCCGCCGGTGCCCTGCTTCTCCGAACTGAGCTGGGTCGTCGACCAGTACGGCCCCTACGCCGACCTCGACGGCGCCGGCGCGTTCGACTCCTCGGCGCTGGGGAGCCTCGGCCTGGACGGGCTGGACCTGGGCCCGGCCGACGGCGACGTCTACCCGGACTCCACGCTGCTGGACTACCTCAACTCGGCCTGCACCGGCGGCGGCGCCATGATGACGATGATGGGCGGCGGTGGCAACGCCGCCCTCAGCAGCTGCGGCGGCGCCATAATGGGCGGACACGACGGCGACTATGGGCCGTCGTCGTGGCGCACGGACGAGCTCTGCCAGGCGGCGGCGAGGAAGCTCGGCGATCATCATCAGTGGGGAGGAGGAATCTAGAAGCAAGCTAGCTCGCTAGAGGCATGATGGGTGCAGGTTGCTTCTTGCCACGCCTCTCTCCTAAAGCTAGCTAGCGATGATCGGGATGTCACACTAGTTAACTATATATCTAGTGGAGCTAAAGCTAGCAGCCAGTAGTCGATCGAGATACCAATTAATTACCAAGGCTTATTAGACGTCTCGGACGATGATCCATCGATCGAGCGCTCGAGATTCAGCCAGCTAGCTAGCTGTTAATTTGATCATCCATCGTTCATCATGGTTTGTTGTGTAGAATTAAAGCTGTAGTTTGTTGATG | |||||||||
gi|198062609|gb|FL793569.1|FL793569 CCGF18198.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CTGTGACTCTTGAAACCGCGAATACAATGGTTTCCCTCTCGAGGTGGCCGTGCTTCTTCTCTGCGCCGCCGTGTCCGGCCTCCACGTCCTACAGCCAATCCTTGATTATTACCTCCTCGCGATCTCCCTTCCCGTAGCCTATTTTACTGGCTTGATCCTTTGTATACGTGCAAATCGCGCCGTTGCCACCTGTGCCACTGCCGCCGGTTGCGTTGAGGCTGTTGGCCGCCATGGCATGTGCCCTGCTTCTCCTCCTTGCCATCATGTGAACACTTGCCAAACCGTACAAAGAAATCGTTTGGACACAAAATTGAGCATTCTCTAGTTTTGGATCCTACAGTATGATCCTTGTGTGAGATCGGAGATCGATCGCTATACAATAAGATACCGGTGTCCCGGCCGGTGGCGACGTGAGTAACCGAAGCTGCAATCTCCCGTGAAAAAAAAAAAACTGCATCAGCTGACCACGAGGATGCCGGAGAAACGGAAGATTTCTTGCACTGTGGTGGCGTCGTCCGTGTTGAGTCATCCTGGTCATGTATGGAATGCAACATTTCCCCATTTCCTGTGCTGGGCGTGAAGGAAGATGAAAATAAGCATCTGTGAGGACATTGTCCATCGAGTCCGTTAACTCGATGGATTTGTAATTGAATCTCAGCTGCATGTGTGTGCTATGTTATGTATTTCATATGTCATATGTGCGTAATATTCGCTTATACTATGTTAAAATGTTG | |||||||||