| mature miRNA: TGGAGAAGCAGGGCACGTGCT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57804517|gb|CX606720.1|CX606720 ANR1_4_C12.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_4_C12_A002 5', mRNA sequen TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CTCCACTCTCTCCCGGAAAAATCCATCCGTCCATAAAACCCAAAAAGTCTCATCAGGTTTAGTTGCAAAGCAGCGATCAAAAGCAGGCCTAGACGACGGCGATCCTCAGCTCAGTAGCCAGGCAGGAGATGGAGCACGACGTGCACCACCACCACCATCAGCAGCCGGAGGAGGCCATGGAGCTGCCGCCGGGGTTCCGATTCCACCCCACCGACGAGGAGCTCATCACGCACTACCTCGCCAGGAAGGCCGCCGACCCCCGCTTCGCCCCGCGCGCCGTCGGCGTGGCCGACCTCAACAAGTGCGAGCCATGGGACCTGCCACCGGCACCACACGTGACCTGCTTCTCCAACACGCTGGAGGGCCACTTCCTGACCCCACCAACCTGCCTCCTCCCCTCCGCCGCCGCCACCGCCTCGCCGTTCCTGGCGAGCATGGCGCAGTACGACGGCGACGCGGGCGTGGGCGGCATGGTGCACGAGCTCCTGCAGGAGGCCGGCGGGTGGTACAGCAAGCTGGGCGAGAGGGAGCGGCTGAGCGGCGGCGCGTCGCAGGACACCGGCGTCACCTCGGAGGTGAACCCCGCCGAGATCTCCTCGACGCGGCACCACATGGATCACGAGGCCTCCTTTTGGGGCTTCTGATGAACTCCCCCGTCTTTTCCGTTATCGTTAAAAAATTGGATTAGAATTAGTCACTGGATTGGAAATGGAGATTGTATTGTGCTATTGAATGAATACTGTTATGTGCAAATGGGGCAAAAAAAAAAGTTGTGAACAAA | |||||||||
gi|14592389|gb|BI139946.1|BI139946 IP1_47_H02.b1_A002 Immature pannicle 1 (IP1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCACGAGGCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGGAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCANAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCT | |||||||||
gi|160710139|gb|EH407703.1|EH407703 RTHAIR1_14_H07.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_1 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGCCAGGTTACGAGCGCCTTTGCTGCCTTCGGTGCATACAGACACGTGACCACAACTTTGCAACGACCTGTGTCTGCCGGGTCCC | |||||||||
gi|13468711|gb|BG487476.1|BG487476 EM1_65_E05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCACGAGGGCCGATCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGTCAAGTCGTCACCCACCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAGGCAGCATGCCTAAGATAAAAACAAGCCGTGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAAAATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGACC | |||||||||
gi|12691591|gb|BG157891.1|BG157891 EM1_6_B10.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GGCTTCTGGAGCCGCTCCGGGTTCGGCCGCGGCGTAGTGATTGGGCTCCTCGACACCGGCATCCTGCCCAGCCACCCGTCCTTCAACGACGCCGGGCTGCCGCCGCCGCCCAAGAAGTGGAAGGGCACCTGCCAGTTCAGGTCGATCGCCGGCGGCGGGTGCAGCAACAAGGTTATTGGCGCGCGCGCGTTCGGGAGCGCGGCCATCAACAACACGGCGCCGCCCGTGGACGACGCCGGCCACGGCACGCACACGGCCAGCACGGCGGCGGGCAACTTCGTGCAGAACGCCGACGTGCGCGGCAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCTGGCCATCTACAAGGTGTGCACGCGGAGCCGGTGTTCCATCATGGACATCGTCGCCGGGCTGGATGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACGGACGGCG | |||||||||
gi|160712376|gb|EH407063.1|EH407063 RTHAIR1_6_G10.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6_ TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): CCAAGGCCAGCATCAGACGAGGCCCAGGACGGCACCCCATCAGCTGAGCCCAACTGTCTGCTGCCCTGCCGCTTGGGCCGCTGGCTGACACATACACTGCCTTCGGTGGTGCCCCAACGGTTTTTGAGCAGGTGTCCTGCTTCTCCGGTCTGCCAGCACTGCCGTTCAAGAGACCAGTGAGCCTTGGGGACCTTCTGGCGTTCTTTTTTTTGAGAAGGAANCCANCGGGACAGNGAGGAGCAGGGTCTCACACCACAGCAGNNCAGNACTGGAGCTGACTCCAAATTGCAACTGGAACCAGGAAAATGACATGTTACAGATGTGGAACCCCCTAGGGATATGAGATAGATCTGTGTTGTTTCGTTGATAGTGGTTGTGAAGTGCTGTCCCAGGTCTGGAGTGCTAGTACTGAGTGTACATGCAGATTAAATTTGATTAGTAGTGTGACATACAGATTACAGATTAGATTATTCATTATTGGACTAATGGCTTGGCGTAGTATTTGTACATAGGATTGCTAATGAAGGAACCGTGT | |||||||||
gi|30970584|gb|CD227150.1|CD227150 CCC1_4_C12.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_4_C12_A007 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): TGGACCCACTTCACTCCTCCCTCGCTTCAATCGATTCGGCGCTAGCGAGCGCCGAGCAGCAACGCCGCCCAAGAAGTGGAAGGGCACCTGCCAGTTCAGGTCGATCGCCGGCGGCGGGTGCAGCAACAAGGTTATTGGCGCGCGCGCGTTCGGGAGCGCGGCCATCAACAACACGGCGCCGCCCGTGGACGACGCCGGCCACGGCACGCACACGGCCAGCACGGCGGCGGGCAACTTCGTGCAGAACGCCGACGTGCGCGGCAACGCGCACGGCACGGCGTCCGGGATGGCGCCGCACGCGCACCCGGCCATCTACAAGGTGTGCACGCGGAGCCGGTGTTCCATCATGGACATCGTCGCCGGGCTGGATGCCGCCGTCAAGGACGGCGTGGACGTGCTCTCCTTCTCCATCAGCGCCACGGACGGCGCGCAGTTCAACTACGACCTCATTGCCATCGCCACGTTCAAGGCCATGGAGCACGGCATCTTCGTCAGCGCTGCGGCCGGCAACGACGGCCCCACCGCGGGATCCATCACCAACGGCGCGCCGTGGATGCTGACGGTCGCGGCGGGCACCATGGACCGCGCGATACGCACTACCGTCAGGCTC | |||||||||
gi|13468792|gb|BG487557.1|BG487557 EM1_67_E06.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCACGAGGGCCGATCACAGACAGACACCGCCTTCTTCCGATTGCGTTTGGCAAAAGCGGGGAAAAAAAAAAAAGTCGGCGCGTGCCCTGCCTCTCCCTCCTCGTCGCCAAGTCGTCACCCGCCTCCTCTCATATTGTGGTCTGGTGTGGATTGGAGATCTGCTCGGACTTGGACTGAGTTCCCCTTCCGTTGGACATTCATTGAAGCAGCATGCCTAAGATAAAAACAAGCCGCGTCAAGTATCCTGAAGGATGGGAGCTTATTGAACCAACAATCCGTGAGTTGGATGCCAATATGAGAGAAGCTGAAAATGATCCACATGATGGGAAGAGAAAGTGTGAAGCTCTCTGGCCTATTTTCCGTATTTCTCATCAAAGGAGCCGCTACATATATGACCTTTACTACAGAAGGAAGGAGATATCACAGGAGCTTTATGAGTTTTGCCTCGA | |||||||||
gi|12691527|gb|BG157961.1|BG157961 OV1_15_B08.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GCACGAGGGCGGCACACGTGACCTGCTTCTCCGACGCACTGGAGGGCCACCAGTTCTTCAACCAGCAGCAGACGCCGCCAGAAGCCGACGCCACGGACCACCTCGGCCTCGCCGCCTCCTCGCCGTTCCTGCTGTCCGGCTTCGCGCATTACGGGCCGCTGCACCACGGCGCGACGAGCCTGGTGCAGCTCCTGGAGGGCAGCGTCGTGTACGCTGCCGCCGGCGGTGGCGGCCTCCCGGACATGTCCAACAAGCAGCAACAGGAGCCCGTGCCGGCGCCGACGTGCAAGGTGGGCGGCGAGCGGGAGCGGCTGAGCTTGTCGCAGGACACGGGGCTCACCTCCGACGTGAACCCCGAGATCTCCTCCTCCTCCGGCGCCCAACGGTTCGACCACGACCACCTCTGCTGGGGCTACTGATCGAGCCGCACATCATCGCGTACGTCATCGCTAGCGATTAGTATAGCACTGCTGGAAATAAGCACATCTACATCTGT | |||||||||
gi|57816615|gb|CX617828.1|CX617828 GABR1_36_B12.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_3 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GAACCTCTGGTGCATTCTTTTTATCAAAAAGGAATATAAACTTCTGAACCACAAAAGATCGAGCTAGCTGTTCCACCGAACATGCATGAACATGCACTCGATTCTCTCAGAAAAGAGCATCTTATTATGGAAGGCACTAGCTGAAATAAGGAGTAGGAGCCTCTCTAGATCCTCCACTGCATATAGTATTTTTTTTTTGATGAACCCATATACAGTATATATTCAATGAGCACACTAGCTACTACTGTGGCGCTTGAAGACGAGAAGGAGCAGCCATATGCATGGTAGCTTTTGCGTCGATATAAGCACCGATGACTGGCAATACGGATAAGCTTCTTCAGTTTCAGTTGTTGTCTGGGATCCAGCAGCCGTGGAAGCCGAAGGGTAGGCCGTAAGGTAACCGCAAGCGGGCAATCTCTTTGAACGTCGCCGCGTCCAGCAGCAGCACGTAGCCGTCACCGTCCATGGTGCTTGCAGTAGATATGACAACCCCATCATCTTCATTGGTTGCTCCCGGCCTGGCCACAAAGAAGGGCTCCGATGGCACCGTGCCCTCCTCATGCCAGCTCGTGGTCTCCTTCTCCACCAGGTCCATCTTGGTGAGCGCGTTGAAGAAATTGCATGGCCGGCGCGCGGTGCAGGCGTACAAGTAGCGGTACTCCTTGCCGACGTAGTCTGGGTTGATGGTGCTCAACTCCACACCCCGGCCGTGCTCTTCAAGGTCCAGCACTGTCTCCAGCTCGCCCATGGCGGCGCTGCCGTCCAGGGGTATTCTGAACCGTGCAACCCTGGAATCA | |||||||||
gi|57813558|gb|CX614784.1|CX614784 GABR1_16_F11.b1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_1 TGGAGAAGCAGGGCACGTGCT EST sequence (targeted fragment marked with yellow): GAGCTGAACATCTGCTGAACCGCTTAATAGAAAGTTAAGGATCCAAAAGCACAGTTTGAGAGTTGATGGACCTATATAACACCTCCTCGTAAGTTAATTAATGAACCTCTGGTGCATTCTTTTTACTCAAAAAGGAATATAAACTTCTGAACCACAAAAGATCGAGCTAGCTGTTCCACCGAACATGCATGAACATGCACTCGATTCTCTCAGAAAAGAGCATCTTATTATGGAAGGCACTAGCTGAAATAAGGAGTAGGAGCCTCTCTAGATCCTCCACTGCATATAGTATTTTTTTTTTGATGAACCCATATACAGTATATATTCAATGAGCACACTAGCTACTACTGTGGCGCTTGAAGACGAGAAGGAGCAGCCATATGCATGGTAGCTTTTGCGTCAATATAAGCACCGATGACTGGCAATACGGATAAGCTTCTTCAGTTTCAGTTGTTGTCTGGGATCCAGCAGCCGTGGAAGCCGAAGGGTAGGCCGTAAGGTAACCGCAAGCGGGCAATCTCTTTGAACGTCGCCGCGTCCAGCAGCAGCACGTAGCCGTCACCGTCCATGGTGCTTGCAGTAGATATGACAACCCCATCATCTTCATTGGTTGCTCCCGGCCTGGCCACAAAGAAGGGCTCCGATGGCACCGTGCCCTCCTCATGCCAGCTCGTGGTCTCCTTCTCCACCAGGTCCATCTTGGTGAGCGCGTTG | |||||||||
gi|31333896|gb|CD427633.1|CD427633 SA1_37_E08.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_37_E08_A00 TGGAGAAGCAGGGCAC-GTGCT EST sequence (targeted fragment marked with yellow): CTTCTCGCCCCCAAACAGCCAAAAACCCCCAGGCGGCCAGGCCCCCAACCCTCGCCGCCGCCCTCCGCCAGCGCTGGGCCGACCTTCCGCCGGCCCAACCGCCTTGACCACGCCGCTCGCGCAGGCCTCTCACAATCTGGCGACGCAGCGCAGGCCGCCGCTGCTGGCACGGTGCCCTGCTTCTCCGGTCGCAGCATTCCCCCTCGCAACATCCCCGCTACGGAGTGTAACATCTACCAACACACAGTTACTAGCCATTCTACTGTTAGCTCTGAGCTCCTTTGGTTTAGCGGAACACCAATCATGGAATTGTTGACAGTCTTATTGTGGGGTTCAATGTCACAAACAGCCAAACAGGAAATATGGAAGTGAAAACCCTCCCTTGAAAATGCAATTTGTAACATTTCATCTATATCTTGTTATAGAAAGATCCATAGAATCTAAGATGCAAATAATCTTATCTTCCTTATTTATCCTGGATTGCCCTACCATTTGATCACACCAAGTTCCTCCCAAAGTGTCATTTCTATTTGGTTCCAATGGATCCTCG | |||||||||