| mature miRNA: TGGAGGCAGCGGTTCATCGAT species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308709669|gb|DK480189.1|DK480189 DK480189 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GGCGGAACAAAAAAAACTTAGGCCTCAAGAACTCACAGAGATCAATTCAACAAAAACCTTTTTTCTGCTCTCTATCTCTTTTTCATCCCATATGTTGCTTTCTTGAGTTTATCTTAAAAGAATGTAAAGCAACATCTGAGGATTCATTGAAAACCAGACATAAACTTATATTTAAACAAAAAAAAAAAACAAATATTTGTGTGTGTGTCTTAATGATGAAATAGCAGATTGAGAGTAAGAAAGAGGTATAACCGCAATGGCGATAGAGAGAATGAGGCAGTTGATGTCCCTTTGGTCTAATTTGAAGAGTAGCCGCGTTTCTCTTACCGGTGGGAATCATACAGCCGCTAGGTTCTGCAACCGCTAGTCTCGCCTTTCTCTAACCCTCTCTTCTCTCTCTCTTTTCTTCTTTTTCTTTTATTCTTATAATTCCTTTTGATTCTCTTTTAGCTTTCTTTTCTCTTTTTCCTGTTAGCTACCAACTTCACTTTTGGGCACGCTCCCCTTTGTCTCTCAGCTTTTAAGACATAGCAAAAACATAAAAAAAATGGTGTTTGTTACTGTCCAAAACATTCACTCAATGTGTCAAAAGCATTTTCACTACCTCTTGAAAAAGAAAGACGGTTCGAGCTATTCTCTTGGCTCTGAGGATTCTTCCCCCAAGGCTTCTCGTTCTGAAGTCTTGAGTCTTTTTATGAGATCAACCCTTTTGGCTTTGTTGTTTCTGTCATTTACTTGGTTGAGTCTGCTTAAGCATGAAACTGATGCACCGCTGCATCCAAATCGGTTGACCCGACCATCATAGGCTATTGCCTTCGCTTCTAATGACTTAGAGAAGGAA | |||||||||
gi|308680490|gb|DK487658.1|DK487658 DK487658 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GGAAGCCACCAAATGAGACAGGGGTCTCTCTAGGTTCGCACAGCGCAGCTTCCAAGGCGAGTCTGTCACCAACGTCTTCGTCTCCGGCGAGCGGTTAACTTCCCGTTTTTCGTTTTCCGGCAAAATTTCTCCGTACCTTATCGTAGTACGTTGATTTCCTTAGGGGTTCGTCCTCAAATGTCAGAAGCTTCTCGGCGGAGTAGGGTCACTATTACTCTAGGCCGTAGCGGCCAGGTGGTAAGTCGAGATGGGAGTGATTTTGATGAGTTGCCCAGAGTTGGGACCAAGCGCTCTGTCAAAGAAAGACTAGGGAACCAGTTAGATGCTTCTGCTTACGGGAGTGATGCGGTCAGTAAAAGGCAAAGAGGGGAAGCAAGTTTCAGTGGAAATGATTTGCAGATCGGTCAAAATGATCTACGTTTCAAACTGTTGCAAAAAAATGCACAGAGACGAGCTCAGAGCGAGGAAGGCAGCACTATCGATCTTCGTGAAAAGCTGCTCTCCAAGTCCAAGAGTGAGCAGCTTCCTCGTAGCTTTGACGCTCGACCTCGTATGGCTGACCCTAGGGATGACCCGTTGCCTCCATCAAGAACTGCTCGTGGTCCCTCTCAGATGCTTTCATCAAGCAGTGCGTATTCTCCATGGGCCCGGGATGATACACGATGGAGATCTCCAGAGAGGCTTATGAGTGATTCCAGGAGCCGATCGCCACCGAGAAATTCTGGTAGTATCAGTCGCACTCCAAGGGCTCTTTCACCACCGAGGAGCACCAGAAGCTTCACCGGTGGTTCTAGGGGTTTATCACCGCCAAGAAGTTCTGGAAGAATGTCGCA | |||||||||
gi|308662181|gb|DK567910.1|DK567910 DK567910 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GGAGAATTACTACAAACTGAGCGTGAAAGTTAAAGTCAACACTGATCAGTTATTTTGTTATTACATTCGCCTCAAAACTTGTTCAATGAACAAAAAGCTAAAGCTATCGGTCTACAGAGTTTTCAAAATTTTGGTATCATTTTGGCACTCTTCTAAGCATTACGTATTTGCCGAACACATTCTTCTCCTGCCACTTGTAAGGGATGAAGAACGATCTATACTTTGCTGGCGATAGCTCTCTGTCCAGATAAGGTAACACCGCAATAGTCTGGAAAAAAAAAACGACCGTCTTAGAGAAAGTGAAATTTAATATATATTTTGATACAGGAAGATGGTTTGATTCTTATACCTCCCATGTCGATAAGTCGCTGCCTCTATATGCATAAGGTCTGCTAAGCTGCAGCTCAATGAGGAATGTGCAAGTTTCTATATTCTTCAAAAATTGTTCATCAGATGCTTGGTTCTTGTTGTTGAAATATGAAGGTGATGCTGCAGTGCCTCCAAGTGTACTGTTAAATGGGAACGGAAGAAGACCTCGGAAACCATCATCGATCCACCGTACTTCGCTAATGTAGTCAGGCACGAAAAACGATGATGGGTATCGATGCCATTCGCTTCCCACACACAGAACAGAACCTGGTCCAGCATCATCATGGTGCTCCAGAAGCTTGTAGACCTCTAAGGGAGCAGAATAGCCATTAATCAGAGAAAACGTGCGAGCATGTGAAGCACATAAGATAAGACCAAAGGATCACAGGTCGGATGTATTTGGTTATTGTCAC | |||||||||