| mature miRNA: TGGAGGCAGCGGTTCATCGAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109866306|gb|DW495282.1|DW495282 GH_RMIRS_106_H03_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAAGCTGAGATTTGGAGGCAAAGGCCGTTTGTTGCCAGAAATGTTCTTTTTGGGCAAGGGTTTCTTCGTGGAGCTGAATCTAGCGTGAAAATCATTTGATTGGATTCGATTCTTAAATTCACGAATCTGCTCCAACTCGGAAATCAACCGATTCTTCAGATCAATCAACTCCTTCCTCGTAAATGAGCTGATGGGGAAGCTAACATAAGCGCCGGAGCTGAAATCGTTTATTTTCCGATTAATCGACGACGCATCATCAGAAGCCGCGGATTGAGTCACGGCAGGGGGGTCATCAACGACATGGCCTCCAACGTCATCAAGTTGCGCGAATTGACGGTAGATATGACGTTTCTTGTTGAATTTAGGGTTAGGGTTTGGTTTTTTCGCTGTAAAGGGAGCTTTGCCCATGAAATCGACAACACTGTTCTTCGGCTGTGGTGGCCAATTTGACTCACTTCGATTCGCCAACACTGCCAACGCCATTAAATTCCCGAGAGCCGGTAGGGTTCCGGCGAGGGTTTCCCAATTGGGACCCGAAAACTAGAAACATGAAATCGATCAAGCGCGGCCTCCACGTGCCGATTAACCAATGCAACCAAGAATTCAACAAAGGGAAAAAAATTCAAAAATTTAATTTCTTTTCTTTTAATAATCTAAAAGTAAAAAGATTAGGGTTTCGGATCTAACCCCTTTCGAATCGATAGAGCT | |||||||||
gi|109865402|gb|DW494378.1|DW494378 GH_RMIRS_102_A07_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GAGAGAACACTTCCGCTTTTTCCTCTCCCCTCTGTTTTCGATGGCATCCGCCACCGTCGACCACCGCAATCACCTCCACATCGAATCTATCCCCGTCGTAGACCTCCGTCTCCTCTCTCAACCCGACCTCCTTTCCCTTGCTTTATGCTCCTCTTCTCCTTCCCCTTCCAATGCCGAAACCGAACTCTTCACTCCCAAAATTGACCGCTCCGTTTTCAACGAATCCGCCGGAAGTCGCAAACAAACTTTCTTCCGCCTCCGCTTCGCCGCACCCCGCAGCCACCTACACCACCAACATTCCTCTCCTCCTTCCGAGCCCTTCCCTTCTCGTTCACTATACCTAAACCCTGAATCTCTTGACGAAGAAAGCTCTAACGCCCTCTCTCTGCTTAAATCACTTTTCAACATCGATGATTCGCTGCCTGCTAACCCCGAAGCTGACGAACCGTACGATGACAAGGATCTTGTGCCGGTTCAAATTGAATATCCAAACGGGAATTCCGGTTTGCAGAATATTCCGGTGGACATTGTTAGTAGTAGTTTAAGAAAAAGGAAGCGAGGGAGGCCAAGGAGGGACGGGAAAGATAATTGGCTGATTGAGAGCGAGCCTTTAGCAATAGAGGAATATAAAGAAATGAAAACCTTTGATAGGCCAAATGAGACAGCGGATGCCGGTAATAGTAGCAGTTGTAACGAAGGGAAGAGGAGGAGGGGGCGGCCACGAAGGGAGGAGAGTCAAAGTAGAGTGATTGCAAGCGAGGAAAAGAAAGTTGAGAGCGAAATTGAGAAGGCAGCGTTTGTGAATGTAGAGGCGATTCTGGGAATTGAAGAGGAGTTGAGAAGGAGGACTGAGGGGATTGTTACAGAGGTGCAACTGCTGGAGTTTAT | |||||||||
gi|109857169|gb|DW486148.1|DW486148 GH_RMIRS_056_G10_034_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): ATCAGCAGAGGACGAGACAACCTTCCCGTTCTCTTGAGGGTTCAATCTCTTCAATTCTTTGCTGAGATTTGGAGGCAAAGGCCGTTTGTTGCCAGAAATGTTCTTTTTGGGCAAGGGTTTCTTCGTGGAGCTGAATCTAGCGTGAAAATCATTTGATTGGATTCGATTCTTAAATTCACGAATCTGCTCCAACTCGGAAATCAACCGATTCTTCAGATCAATCAACTCCTTCCTCGTAAATGAGCTGATGGGGAAGCTAACATAAGCGCCGGAGCTGAAATCGTTTATTTTCCGATTAATCGACGACGCATCATCAGAAGCCGCGGATTGAGTCACGGCAGGGGGGTCATCAACGACATGGCCTCCAACGTCATCAAGTTGCGCGAATTGACGGTAGATATGACGTTTCTTGTTGAATTTAGGGTTAGGGTTTGGTTTTTTCGCTGTAAAGGGAGCTTTGCCCATGAAATCGACAACACTGTTCTTCGGCTGTGGTGGCCAATTTGACTCACTTCGATTCGCCAACACTGCCAACGCCATTAAATTCCCGAGAGCCGGTAGGGTTCCGGCGAGGGTTTCCCAATTGGGACCCGAAAACTAGAAACATGAAATCGATCAAGCGCGGCCTCCACGCCGATTAACCAATGCAACCAAGAATTCAACAAAGGGAAAAAACTTCAAAAATTTAATTTCTTTTCTTTTAATAATCTAAAAGTAAAAAGATTAGGGTTTCGGATCTAACCCCTTTCGAATCGATAGAGCT | |||||||||
gi|109864996|gb|DW493972.1|DW493972 GH_RMIRS_099_G09_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAAATGGGGGAAAAATAGTGATTAAATATTTGCAACTTTTATTTGAAAAATAATCAGTAACCAGGTAGGGTCGACAACTGGGAAACGATAACGTAGCCCCTTCCGCTTCACTGCAGCCACCAAACATTACGCCATTAATAGTGAACACTCTAAAAGGTAATATATACAGAAGTAATGGAAAATAAAAATTTACTCATTATATCAAGATCTATAGTTTAAAAAAAAAGAATTTCTGCAACCAAAAAACAGATTTTGTTAATAACTAACATAAAACTTCATGGGAGAGTTAAGGCGCTGGATGCAGAGGTTTATCGATCGATTCATGTATTTGTGTTATTCTCACAACAAAATTCTCAGGAAGAGATCGATGAACCGCTGCCTCAATAATAACGCTAAAAATTTTCCATGCTCTCATAAAAAAAATAAAGAATCGACAGAAAGAAAATACAAATCTAACAGATCTAAACTAATTAAGAGAAAATAAAAACTTCGCAATGTATTATACGAATAAAAGAACTGCAAAAAAAGAAACAATTCCAAGAAAAAAACAAATCTAATTGTAGTCTCGCCATTGCCGTACT | |||||||||
gi|109847241|gb|DW476221.1|DW476221 GH_RMIRS_001_G12_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): AAAAAAACCCTTTTGAAATGATAAACCGCTGTCTTCAATCCTAACGATCCTTTTCTTCTTAACATTCTCTACCTTATCTTCTTCAACCTCTCCCTTCTTTCTACTGCAAAGCAATGTCGAACGAAGAGGAACAACAACTCACTGAGTCACAAGACCCAGAAGAGGATGATGAAGAAGAAGAACAAGCACAACAACTTACTGAGTCGCAACAGCAATACGCAGACTCCGACTCCGGCTCCGACTACTCCTCCTCTTCCTCTGACGACTACATCGAGGAATCCGATTCCGAAACCCTCACTTACACCCGACCCGGAGAGGCCCCACCTGAAACCGTAAACACCCCCGAAACCAACATCCGCAGGTACACTCGGGTGCTGGAGAGCAAGAGAATCAAGAGGATCCAAGAGGAAGAAGACGAAGACTACGTTTACATCGAAGACTTATGGGATTTTCCACCAGACCCCGAGAATTGGCGGGAAGAGGATTTGAAGGAGTATTGGGTGGATGCTCCGCTGGAGATGACCAAACCCGGTTGGGACCCTGTTTGGGCTGATGAGGAAGATTGGGAAATTGTTAGGGATGAGATTAAGGAGGGCCGGGACCCGGGGATTGCCCCGTTTTATGTTCCTTATCGGAAGCCTTATCCGGCTATACCGGACAATCATTATGATATTTCGAACCCCAAAGCTTTGTCTCGTCCTCTGCCTG | |||||||||