miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGGAGGCAGCGGTTCATCGAT
species: Manihot esculenta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164376241|gb|DB920810.1|DB920810 DB920810 full-length enriched cassava cDNA library Manihot esculenta cDNA clone CAS01_003_B2

TGGAGGCAGCGGTTCATCGAT
||.|.||||||..||| |||.
ACTTTCGTCGCTGAGTTGCTG

EST sequence (targeted fragment marked with yellow):
GGAACAGGCAAGAAAAGAATACAAGCCAAAGAGATTCACAGACACAGATTAGATTAGAAAACGGGAGAGAGTGGTAATGATGATGCTCAAGTTGATGAAAGGAACAAAATTTATATGGTCTTTTTGAGATGGGTAAATTATTATTGTTATTATTCTTCACCAACTCCAAGCTACCATTGTCGTTGAGTCGCTGCTTTCACTTGGGATCCAAGTCTCCTTTCATCGCCATCACCAATTCACCTTCCTTTTTGCGCTTCTCGAAGCGCACTTCCCGACCATGAACCTCTCCCTTAAACCCTTTATTGGATCTCCCTCGCAGATCCTTCTTCATTTTTTCCACCTGCGTTTCATCTCCCTCATCCCTCTTTCTCATGGACCCGACCACTCGACCTGCTGTTGTCATGGACAATGGCACCGGGTATACTAAAATGGGTTTTACTGGAAATGTAGAGCCTTGTTTTATTTTACCTACTGTAGTAGCTCTAAACGATTCGTTTCTTAATCAATCCAGAACTTCAAAAGCGAATTGGCTTGCGCAGC