| mature miRNA: TGGAGGCAGCGGTTCATCGAT species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161576460|gb|EY947864.1|EY947864 RS3DJ72TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GGACAAGAACATTTTCCAAAGATGGCTTTAGCCATTGCGTCTTCTCTCACTTCCACACTCGCTTTATCCACGAGCAGAGTACAAAATGCACTAGGAACGTTCTCATCACGTGTAGGTGGAAGAACGAGCGAGCGTTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGTGTCTGTGAACCGCTTCCTCCGGACCGTCCTATGTGGTTCCCCGGTACTTCTCCTCCTGAATGGCTCGATGGCAGTCTTCCTGGTGATTTCGGTTTCGATCCTCTTGGTCTAGGGTCTGATCCGGAAACCCTCAGATGGTTTGCACAAGCTGAGCTCATACATAGCCGGTGGGCCATGCTAGCAGTAACCGGTATTTTAATACCGGAATGTCTGGAGCGGTTAGGTTTCATCGAGAATTACTCCTGGTACGACGCAGGGTCACGCGAGTATTTCGCGGATTCCACTACCTTATTTGTGGTCCAATTAGTGTTGATGGGCTGGGCTGAAGGTAGACGTTGGGCTGATTTTATCAAACCGGGTTCGGTTGACATAGAGCCACAGTATCCGCACAAGGTGAATCCTAAACCGGATGTTGGTTACCCGGGAGGTTTATGGTTCGACCCGATGATGTGGGGGGAGAGGTTCTCCTGATCCGGTCATGGTTATGAGGACTAAAGAGATTAAAAA | |||||||||
gi|156161800|gb|EW721946.1|EW721946 RS1BF28JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TGGAGGCAGCGGTTCATCGAT EST sequence (targeted fragment marked with yellow): GAGTCACGTGCCAAGGCTGGATCAGGAGTCGCTGTTGCTGGGCCTGGATTGGGCCGTGCCGCTGGACGTGGAGTGCCGACTGGGCCGCTCGTTCAAGCTCAGCCTGGGCTTTCTGGGCCTGTTCGTGGAGTCGGTGGGCCGTCTCCGGGGATGATGCAGCCGCAGATCTCTCGTCCTCCGGTGATGCGGCCTCCGGGACAGATGCTTCCGCCGCCGCCTGCTTTCGGTGGTCCTCCTCCTCCGATGGGGAGAGGTGTTCCTCAAGGTCCTCCTCCGAATTACGGTATGAGGCCTCCGCCGCAGTTTGGTGGACCGCTGCCTCCGTATGGGCAGAGACCGATGGGACCTCCGCCTGGTGGGATGATGAGAGGTCCTCCTCCACCGCCTCATGGGATGCAGGGACCCCCGCCTGGGCCGCCTCGCCCTGGAATGCAGCCTCCTCCTGGAGGGTTTGCTCCACAGCGTCCGGGGCCACCACCGCCTAATCCACATAATCAGCAGCAGTGATTAGGTTTGCCATGAATGAATGTACCCTTTTTTCTTAAGCTGAGATTGTGAAGGCATTGTTAAGTTTGTTTGGGTTGGACTTTACTCAGATTTAAAGTGTCTTGCTTTTCATGTCTTTAGCTGGAATCTCCTGATCTATCTTTAGCTGGAATCTCCTGATCTATCTTATTTGCGCATAATCGTTATATATTGCTATATGTTTTATGTCTGGAACTCTAATCATAATTCTATGATGACCTGAGTGAGCACATAGTGAGTGTCTCTACTGATGTTGAATTGCTG | |||||||||