| mature miRNA: TGGAGGCAGCGGTTGATCGAT species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|112358682|gb|AM388852.1|AM388852 AM388852 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a004L0 TGGAGGCAGCGGTTGATCGAT EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGCAAAACCTCTTTCTTTAAAGAACTTGGACACAAAGGATCCAAAAATGGATGCTATGTCTTCCAACTTCACTCTCTCCAAGATCCTCAACACAGAGGATCCATACAGCTCCGTCATGCTGGCCGCGGCTGCTCTCCTCGCCGTCATCTGCTACTTCTGGATTCAAGGAAAATCCAAATCAAGAAACGGTCCACCGTTGCCTCCGGGACCTTGGCCACTTCCCATAGTCGGAAACCTCCCGTTCCTAAACTCAGACATCCTCCACACGCTTCCTCTTCTTGTCCCTCATCGCAACAGTGAGACCTCGGTGGTTGCGGGGTACACCGTGCCTAAAGGCTCAAAGATCTTCATCAACGTGTGGGCCATTCATAGAGATCCTAAACACTGGGATGAGCCAAATGAGTTTAAACCTGAGAGGTTTCTTGAGAACTCGCTTGACTTCAACGGTGGTGACTTCAAGTACTTGCCTTTTGGATCAGGTA | |||||||||
gi|308662181|gb|DK567910.1|DK567910 DK567910 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TGGAGGCAGCGGTTGATCGAT EST sequence (targeted fragment marked with yellow): GGAGAATTACTACAAACTGAGCGTGAAAGTTAAAGTCAACACTGATCAGTTATTTTGTTATTACATTCGCCTCAAAACTTGTTCAATGAACAAAAAGCTAAAGCTATCGGTCTACAGAGTTTTCAAAATTTTGGTATCATTTTGGCACTCTTCTAAGCATTACGTATTTGCCGAACACATTCTTCTCCTGCCACTTGTAAGGGATGAAGAACGATCTATACTTTGCTGGCGATAGCTCTCTGTCCAGATAAGGTAACACCGCAATAGTCTGGAAAAAAAAAACGACCGTCTTAGAGAAAGTGAAATTTAATATATATTTTGATACAGGAAGATGGTTTGATTCTTATACCTCCCATGTCGATAAGTCGCTGCCTCTATATGCATAAGGTCTGCTAAGCTGCAGCTCAATGAGGAATGTGCAAGTTTCTATATTCTTCAAAAATTGTTCATCAGATGCTTGGTTCTTGTTGTTGAAATATGAAGGTGATGCTGCAGTGCCTCCAAGTGTACTGTTAAATGGGAACGGAAGAAGACCTCGGAAACCATCATCGATCCACCGTACTTCGCTAATGTAGTCAGGCACGAAAAACGATGATGGGTATCGATGCCATTCGCTTCCCACACACAGAACAGAACCTGGTCCAGCATCATCATGGTGCTCCAGAAGCTTGTAGACCTCTAAGGGAGCAGAATAGCCATTAATCAGAGAAAACGTGCGAGCATGTGAAGCACATAAGATAAGACCAAAGGATCACAGGTCGGATGTATTTGGTTATTGTCAC | |||||||||