| mature miRNA: TGGAGTGGAGTGGAGTGGAGTGG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|15702531|gb|BI726836.1|BI726836 1031088A06.x1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTCCCTGCTAACCTGCTTACAATTCGCCCACCTCCTTTCAACCCCGACCTCCCGGCAGTCTGGCTGAATATACAATGTTCCACTACATGCACCTTCCGCAAGACACTTCCTACACGTCCCACGCATCCTGCAACCCACAGACCTGGACCTCCAATGACACACGCCATGCAATCCCTGAACAATCTGAAGCTCAACATGCATTGCATCTTTCACATCACACTCCATCAGCACATATATTTAATTGTGCCTGGGGAATCCCCGCCGGCACGTGCTCCACATGTTAGTCATTTATGCCTCGTGAGTGTCGGGACCTGCTCCATCAAACTCAAGAAACGCTCAACTCCACTCAACTCCACTCAATTGCTGCCTGACTTGATTTGCCCGCTCCTGCTCCAGCTCTGGACCCCAACTGCACGCATGCGAGCGCTTTGCCGCCTCCTACTGGGCCTTCTTATCCACCGCCCCGGAGGCCGCCAGCTGCTCTTGCTGCTGCTGTTGCTGCTGCTGCGGCGGCGGCAGCGCGACATTCAGCTGGAAGCGGCGCGCCAGCATCCAGT | |||||||||
gi|9264151|gb|BE352298.1|BE352298 894059D03.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTGGTACACGCAGCGTACAAGAGCGTCAAGACCGATGCGCCCTGGCTTTGCCTATCCGTGCACCGTCCCGCCGCCCCGTCATGGGGCAACCCTGGCTAATCCTCCGAAGCCCGCCGGGAGCAGCTGGACTTTTATACCGGTACTTCCGCGCAGCCGACAGCCGCTTCACTCCGTTCCACTCCGCTTCACTGCGCTTCACTCCGCTTCACTCAGCGTCACTCCGCTACTTTTCACACTACCAACTACCAAACCCGCATGCCTTTTCCAACGCCTTTTGTCACCGAGCAGCCGCCGCCGCCGCAGCCGCGGCCGCTACCGGCGCGTCCGCCGTCGCCATCGCGCTCGCCTGCCGCTCAACCCAGTCGCTCACACTGCATGCCGCACTCCCCGCCTGCCCCTTCCCAGCCCCCAGAGCCACACCCAGACCCAGCCGCGCCGCCTGCCCCCGGATGTCTGCCT | |||||||||
gi|23363046|gb|BU650866.1|BU650866 1112089G09.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTGATGCCAAAGGATTACAACTAGAGACTACCAAGCATCGCAGGCCGAGCGCTGTACCGTAATACCAGTACGTGCGTGCAGCACACAACTCACGCCCTTTCGCTTGGGCGGCCGGGTATGGGGAACCTGCTTGCTAAGCCCACCCCACAAAAAAATAGAGGGCACCCTAAAATATCCCATTATGAATTAGACGCATCCGCGCTCCGCGTCGCAAACCCCTTGAATCCCCCGGGCCTAGGACCCGCACAACACCCACTACATTCCACTATATGACATGCAAGTACGGTATAAGCTTTAATCATAGCTACGGCACCCTCACCAGCAAACTGTCAGCGACAGACTAGCTTCCTTTCGCGGGGTTGCTTCACGATCACCCCTCGCGAACAGCCACGATGTTCGGACCCAGGCCACGGTTCAATGGGCCTGCAGTTAAATGCCCTGCGCTAGTAATCTCTGTTCCGCTCCACTCCACTCCAGGTCGTGCATGCGTCAAACCACCACCACAATCGCACACTTCAACTCTGCACAGCTCTCCTCAAA | |||||||||
gi|15702531|gb|BI726836.1|BI726836 1031088A06.x1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTCCCTGCTAACCTGCTTACAATTCGCCCACCTCCTTTCAACCCCGACCTCCCGGCAGTCTGGCTGAATATACAATGTTCCACTACATGCACCTTCCGCAAGACACTTCCTACACGTCCCACGCATCCTGCAACCCACAGACCTGGACCTCCAATGACACACGCCATGCAATCCCTGAACAATCTGAAGCTCAACATGCATTGCATCTTTCACATCACACTCCATCAGCACATATATTTAATTGTGCCTGGGGAATCCCCGCCGGCACGTGCTCCACATGTTAGTCATTTATGCCTCGTGAGTGTCGGGACCTGCTCCATCAAACTCAAGAAACGCTCAACTCCACTCAACTCCACTCAATTGCTGCCTGACTTGATTTGCCCGCTCCTGCTCCAGCTCTGGACCCCAACTGCACGCATGCGAGCGCTTTGCCGCCTCCTACTGGGCCTTCTTATCCACCGCCCCGGAGGCCGCCAGCTGCTCTTGCTGCTGCTGTTGCTGCTGCTGCGGCGGCGGCAGCGCGACATTCAGCTGGAAGCGGCGCGCCAGCATCCAGT | |||||||||
gi|9264151|gb|BE352298.1|BE352298 894059D03.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTGGTACACGCAGCGTACAAGAGCGTCAAGACCGATGCGCCCTGGCTTTGCCTATCCGTGCACCGTCCCGCCGCCCCGTCATGGGGCAACCCTGGCTAATCCTCCGAAGCCCGCCGGGAGCAGCTGGACTTTTATACCGGTACTTCCGCGCAGCCGACAGCCGCTTCACTCCGTTCCACTCCGCTTCACTGCGCTTCACTCCGCTTCACTCAGCGTCACTCCGCTACTTTTCACACTACCAACTACCAAACCCGCATGCCTTTTCCAACGCCTTTTGTCACCGAGCAGCCGCCGCCGCCGCAGCCGCGGCCGCTACCGGCGCGTCCGCCGTCGCCATCGCGCTCGCCTGCCGCTCAACCCAGTCGCTCACACTGCATGCCGCACTCCCCGCCTGCCCCTTCCCAGCCCCCAGAGCCACACCCAGACCCAGCCGCGCCGCCTGCCCCCGGATGTCTGCCT | |||||||||
gi|18690059|gb|BM518907.1|BM518907 894102C07.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTATGCGGCACAAATTACACGGAATCCTGGCACGTCCTGCACGGGAAGGCCCACTTTTTCCGCCCCCACTCCACTCCACTCCGGCCAGTACCAACCAGCTGTAACGGCATCCAGGCTAACGCGCCTGCTTGCATCCTTGTACCTTGACACCACGTCTGCGCACTATGCAGGCCACCCGCCGCTCACCCACCCACCGGACCCATGGTTCCCCCGTCCCGACCATTATCTGCACGGACAAAACTTGCAGGCTCAAGTTGCGTTGTTTATTCCATGGGGCATGGCCCACGCGGTTGCACCTGGTATGCTGCCAATGCGGCCAAAGACAGACGCAAACTTCTTAATGTCCGGGCCCATATACACAACCACGCCGTGAGGGTTACCAACTCGTGCGCCCCACGTCAGCTGCTGCCCGTGCGACCCGCCTGCCCAAGCGCCTGCCTGTGTGCTGTCACTGCGCACAAAGGCAAGCCTGTCACGCACGAAACACACTGGCCATTGCATCACTGAATCAACTAAGTTG | |||||||||
gi|23358699|gb|BU646519.1|BU646519 1112051F03.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTAGCTGCTGGCGGCTTGAAAGGGTTCAAGTGTTCTGTGCCATCATGCATCGCCGCTCCACAGCCTGCTCCACTGCCGCCGCATCACCGACTCCATTCACCCTGCTAACCTGCTTACAATTCGCCCACCTCCTTTCAACCCCGACCTCCCGGCAGTCTGGCTGAATATACAATGTTCCACTACATGCACCTTCCGCAAGACACTTCCTACACGTCCCACGCATCCTGCAACCCACAGACCTGGACCTCCAATGACACACGCCATGCAATCCCTGAACAATCTGAAGCTCAACATGCATTGCATCTCTCACATCACACTCCATCAGCACATATATTTAATTGTGCCTGGGGAATCCCCGCCGGCACGTGCTCCACATGTTAGTCATTTATGCCTCGTGAGTGTCGTGACCTGCTCCATCAAACTCAAGAAACGCTCAACTCCACTCAACTCCACTCAATTGCTGCCTGACTTGATTTGCCCGCTCCTGCTCCAGCTCTGGACCCCAACTGCACGCATGCGAGCGCTTTGCCGCCTCCTACTGGGCCTTCTTATCCACCGCCCCGGAGGCCGCCAGCTGCTCTTGCTGCTGCTGTTGCTGCTGCTGCGGCGGCGGCAGCGCGACATTCAGCTGGAAGCGGCGCGCCAGCATCCAGTCACGGAGCCACATGGGCCACCACAGCGCAAACTGGGTC | |||||||||
gi|23358699|gb|BU646519.1|BU646519 1112051F03.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TGGAGTGGAGTGGAGTGGAGTGG EST sequence (targeted fragment marked with yellow): TTTTTTAGCTGCTGGCGGCTTGAAAGGGTTCAAGTGTTCTGTGCCATCATGCATCGCCGCTCCACAGCCTGCTCCACTGCCGCCGCATCACCGACTCCATTCACCCTGCTAACCTGCTTACAATTCGCCCACCTCCTTTCAACCCCGACCTCCCGGCAGTCTGGCTGAATATACAATGTTCCACTACATGCACCTTCCGCAAGACACTTCCTACACGTCCCACGCATCCTGCAACCCACAGACCTGGACCTCCAATGACACACGCCATGCAATCCCTGAACAATCTGAAGCTCAACATGCATTGCATCTCTCACATCACACTCCATCAGCACATATATTTAATTGTGCCTGGGGAATCCCCGCCGGCACGTGCTCCACATGTTAGTCATTTATGCCTCGTGAGTGTCGTGACCTGCTCCATCAAACTCAAGAAACGCTCAACTCCACTCAACTCCACTCAATTGCTGCCTGACTTGATTTGCCCGCTCCTGCTCCAGCTCTGGACCCCAACTGCACGCATGCGAGCGCTTTGCCGCCTCCTACTGGGCCTTCTTATCCACCGCCCCGGAGGCCGCCAGCTGCTCTTGCTGCTGCTGTTGCTGCTGCTGCGGCGGCGGCAGCGCGACATTCAGCTGGAAGCGGCGCGCCAGCATCCAGTCACGGAGCCACATGGGCCACCACAGCGCAAACTGGGTC | |||||||||