miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGGATTGGGATCAGGTGCAGG
species: Volvox carteri
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167196043|gb|FD914947.1|FD914947 CBOX18447.fwd CBOX Volvox carteri f. nagariensis induced female Eve, 2kb Volvox carteri f. n 

TGGATTGGGATCAG-GTGCAGG
||||.||||||||. ||||||.
ACCTGACCCTAGTTGCACGTCT

EST sequence (targeted fragment marked with yellow):
ATTGGCTTGCTCTGCACGTTGATCCCAGTCCAACTAGGAATGGAAGACACTTCTAAAGGAGCATTTCCCATTCTTCCATCAGCCATCCAAATTTTCACCATTCTTGGAGCCCTTTATCCACATTTAGACATCGTCGATGACCGTGTCATCATCCAAACGGGTCGCCCGCAACTCGAGCAAAGCTTGCATGCCTTGGGCCTCGGCTCTTGCCTACTGCTTTTGGGCTTCTACTGCTGTCAGTTCCTACCTCCGCTGGCCCCCCTACGGAAGGAGTACCTAGGGACCCTAGCGCTCGTACAGATTGCCCACTTCACGCTGCTGCTCGGCCGAGTAGCCTTCTTCCCCGCCTCCTTCCGCACAGACAGCGTGGGCACCCTTCTAGGCGTTGTCGCTGCCGCCAGCGTCACCGTTCTGATCTTGAACGACCACCTGGCAGTCCCAGCTCGTCCATCCGCAGCTCCGCTGGAGCGCCAGCGGGCGAGGCGTGCACACATAGCTGTTACCTTGGCGACGCATACGTTATGGCTGGTGTTCACGCTGCTGTTCGTTTTGCCATACCTGTCTTCGCTAGTCCCGGTCGATGTACCCAGAGAGGGGCCGTACGGTTCGGTAGCAGCGGTTCTGGCGCCAATGACGGCCCTGGCAAGGCTGGGGGTATTTGTGTCAGGGCGGATGGCTGCGGGGCGGGTCGCCAAGCAGAAGACCGCGTGATGGGCCCTCCCCAGCCATGTAGAAGCTCACGGACGAGCAGCTC


gi|167137027|gb|FD857591.1|FD857591 CBHA7007.fwd CBHA Volvox carteri f. nagariensis induced male 69-1b, 2kb neb notI Volvox cart 

TGGATTGGGATCAG-GTGCAGG
||||.||||||||. ||||||.
ACCTGACCCTAGTTGCACGTCT

EST sequence (targeted fragment marked with yellow):
CTGCAAACATCTTTGTAGATATTGACTATTCTATTGGCTTGCTCTGCACGTTGATCCCAGTCCAACTAGGAATGGAAGACACTTCTAAAGGAGCATTTCCCATTCTTCCATCAGCCATCCAAATTTTCACCATTCTTGGAGCCCTTTATCCACATTTAGACATCGTCGATGACCGTGTCATCATCCAAACGGGTCGCCCGCAACTCGAGCAAAGCTTGCATGCCTTGGGCCTCGGCTCTTGCCTACTGCTTTTGGGCTTCTACTGCTGTCAGTTCCTACCTCCGCTGGCCCCCCTACGGAAGGAGTACCTAGGGACCCTAGCGCTCGTACAGATTGCCCACTTCACGCTGCTGCTCGGCCGAGTAGCCTTCTTCCCCGCCTCCTTCCGCACAGACAGCGTGGGCACCCTTCTAGGCGTTGTCGCTGCCGCCAGCGTCACCGTTCTGATCTTGAACGACCACCTGGCAGTCCCAGCTCGTCCATCCGCAGCTCCGCTGGAGCGCCAGCGGGCGAGGCGTGCACACATAGCTGTTACCTTGGCGACGCATACGTTATGGCTGGTGTTCACGCTGCTGTTCGTTTTGCCATACCTGTCTTCGCTAGTCCCGGTCGATGTACCCAGAGAGGGGCCGTACGGTTCGGTAGCAGCGGTTCTGGCGCCAATGACGGCCCTGGCAAGGCTGGGGGTATTTGTGTCAGGGCGGATGGCT