| mature miRNA: TGGCATCATCAAGATTCACGT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90521735|gb|DY983593.1|DY983593 CLSS6210.b1_C17.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS6210, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): GCCGGGGATTCCATCCACCCTTCATCCTTCCACACACGACTAGGGTTTCTCTGCCTCAAACCCAATCATAACATGCCAACTGGGTTTTGCTCCTTCTTCATCTTCTTCCGTTTCTTCTGCACAACACCTTTCAATTTTCAAAACCACGAAAGTCATTGGTTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGAATCTTGATGATGCTGCATCAGAGATCAATCGACTACATTCCATTTACTACGGTTGCTCTGAATCTTATATAGAAAGGTAAACGTTATTAATTTCCGTACGTGTGTGTTTCTGTATGCTTTATCATATTATTAATTAAGCCCATCATGATTTTTCTTATGTCTATAGTCAATATCAAGTAGCCTTGGGTCGATAAAAAGTGCTATTTTTGTTCTTATTACCGATCTTTTGGTTAATTAAGTTTCTCTTGCTAATGTAATTGAATGGTGTTTTGCGGATATATGATGGGATCTTAATAGGCTCTAACAATATTGTCCAAGATAAAGAAACGGAAACAGAAACCGTATAACGCACATATATACACCTTTGCAAACTATCTCGTTCTCTGAAGAAGAACAACATCATTGAATTACAGGATCTGCTGATAGAAAGCGGTGAAGTCATCTAATTCGTACTTATTTATTTTAAAATGATATCTTCGTACTTATTTATTTAAAAATCATATCTGGGCGTCTTTTAAATTTTCATAATCTTCATGAATTAGTAGTTTATATGAGATCAAAAGATTTTTGTTTTTCTTTTGGTGCCTCAGTTACAGATCTTAGGGAGCAACGAAATTTCCTTTNCTTCTANGCTGCCCGTGTATGGAAAACCATCTTACACGTCAAAGCTGACGTGGCCGACTTTCCCACGCGTAAAGGGCATGT | |||||||||
gi|90512571|gb|DY974429.1|DY974429 CLSM8102.b1_K09.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM8102, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): AGAGCAAGAAGAATGGAGAAGCAGGAATGGGGTTTCAAGGAGAACCATGAGCTTCATGCTGCTGCATCCTTCACGATCAGAAACATCTTCGAAGCCATCATGGGCAACATTGATGAAACCGCAACTGGGAAACCAATGATTCATCTCGGACATGGTGATCCTTCGGTGTATCCATGCTTCAAACCATCTCCTGTATTAGAAGAAGCCTTAGTTCAATCAATTCAGTCCACTCAGTTCAATGGTTACCCTGCTGGTGTTGGAATTATTCCTGCAAGAAGGGCTATTGCTGGGTATCTAACGAGAGACCTTCCCTACGAATTAACAGCTGATGATGTTTTCCTAACGGCTGGAGCAAATCATGCTATCGAAGTCGTACTAACATTTCTTTCACGTCCGGGTGCTAATATACTTTTTCCTCGGCCTAATTACCCAATTTATGAAGCTCGGGCAAGATTTAGTCCACTTGAGGTTCGCCATTTTGATCTCCTCCCTGAGAAAGGATGGGAAGTTGATCTTGATGGTGTCAAAGCATTGGCAGATGAAAATACGGTGGCTATTGTCCTCATCAACCCTGGAAATCCCTGTGGAAATGTTTTCACAATCGACCATATGCGAAAGATTGCGGAATTAGCAAGAGAACTTCGGATTTTGGTGATAGCCGATGAAGTTTATGCGCATCAAGTTTTTGGACAAAAGCCTTTCATCCCCATGGGAGTATTTGGAGATATCGCACCAGTTGTGACGCTTGGGTCATTATCAAAACGATGGATCATTCCTGGTTGGCGTTTTGGATGGATAGCAATTACTGATCCTAATGGCATTCTTCGCAAAACTGGGCTTGCTGAAACCATAAAGAGTACTCTTGTGATAGCAGCAGATCCGCCAACGGTGATTCTGGGAGCTATTCCTTATATCATGA | |||||||||
gi|83986147|gb|DW132256.1|DW132256 CLSX8912.b1_O19.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX8912, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): TTTTTCCTTGTCTACCCCTTTTCCCTCCGCCGATGTCCTCTCATTCTTAGGGTTGCAATTTCCCTAAAGCTAGGAAGTCTAATCAGTCTCGATTAAGCCCCAGAAGGTTTTTCAGGTCTTGTGATTAAGTACAGTAACTCAGTCGGAGCAGTTTAGAAAAGATGATTCGAGTTGCTGCTGGTAGGCAGTGGAATGGTATTATCAGAGAACTCCATGGTTCAAGTTCGCCTATCACACCGCTGTTTCTGCAACAGTTTTCAACCACTAGTCAGTCTAAAGTGGCTTACACTGGCTCAGAAATTCTCAACTACATGGGGGGATTGGATGGTGATGAAAAACAGTTGATCCATAAGTTGGTGAATTTTCGCATGAAAGAAGGCAAAAAGACGAGAGTTCGTGCTATCTTCCATGAAACCCTTCACAAGCTAGCTCGTACTGATCGTGATGCAGTCAAACTTATATCTGAAGCCCTAGAGAATGTGAAACCCATTTGTGAAGTAGCAAAAGTAAGAATAGCTGGTAATATTTATGATGTCCCTGGGGTTGTAGCCAGGGATAGGCAACAAACTTTAGCTGTTCGTTGGATCCTTGATGCAGCTAAAAAACGACGAACTAATCATAGCTCAAGATTGGAGGAATGTTTGTCTGCTGAGATAATGGATGCTTACAGGAAGAGGGGAACTGCACGTAAGAAAAGAGAGGTTCTTCATGGACTTGCTTCCACCAATCGAAGCTATGCCCATTTCAGATGGTGGTAATATGGTACCACACAAGATCTACATCTCCTTTAATCAGATTATCTGGTCATCTTTGTTGCTTATCCNTCACATTTTGGACGTGTGAAGATTGATGATGCTAGAGAATCCATAATC | |||||||||
gi|83988156|gb|DW134265.1|DW134265 CLSY1751.b1_M06.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSY1751, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): TACTCCTCATCTCTATCCTCTCCTTGAAGATCTAATTCATGTTTTTTTCCTACCAAACTCAGATCTCCCTCCGGCCGGTTGATTTCAGACTTTTATCTGTTTTCCGGTATCCGAAATATCTAACGTTTACATATCTGCTTATGCAGTTGATTATATTGTTTTGATGGTCTCTTACTTAGGTTTCTGATTTTGGTTTCGATCAAATCTACTCTCTCTTTTCGTATTCGTAGATGTAACCGCCTAAGTCTTCTGGATCATCCGTCTTAATTTCTTTTTCTGAACATCAGATCATCGGTTTGTTAGGTCAGAATCTGAACACATGATCATGTGGATCATGTCCCTGCGTTGCCTCGGAAATGAAAAATCCGATCAAAACCGCGCATTGGATTCCGACCAATAACAAAGCGTATGCGAGATCGGAGAAGAAAAATAGGGTTTTGTTCTTTTTATATTTTTATATTTTTTTTGTTTGAAAAGGAGTTGCTATTGGAGTAGATCTTTTGGTTTTATGTGGTACCTCTCCTTAGTGACTTTAGAATTCGACCAATCTTGACGTGCCACATCACATCTTCGCTCGTGGCCTTAATTATTAAGAGTGACCCCATGAAGACCCCCTCCGAAGTTTGATTTTTCAGCCATTTTTTCATCTGAAAGCTCTCTAATGAAAAAAAAGACATACTCTTATTCTTCTTCTTCTTCAAGGGTTACTATCAGCCGCCAAGGGATTTTTCCGATCAAACCCTAAAGTCGTTGTTTTCCGGCGTGGCATCATCAAGATTCACGTACAAAAGCAAAAAGCAAAAGCTTTTTGAGGATGAGAATCTTGATGATGCTGCATCGGCAATAAATGGCTGTGCTATAGGTAGATGGCGTCAAGAAGTGTACTCTCTGCATTGTAGATGGTATCGGTAGCTGAC | |||||||||
gi|22237648|gb|BQ852183.1|BQ852183 QGB17F15.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB17F15, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): GATAGGCAACAAACTTTAGCTGTTCGTTGGATCCTTGATGCAGCTAAAAAACGACGAACTAATCATAGCTCAAGATTGGAGGAATGTTTGTCTGCTGAGATAATGGATGCTTACAGGAAGAGGGGAACTGCACGTAAGAAAAGAGAGGTTCTTCATGGACTTGCTTCCACCAATCGAAGCTATGCCCATTTCAGATGGTGGTAATATGGTACCACACAAGATCTACATCTCCTTTAATCAGATTATCTGGTCATCTTTGTTGCTTTTCCTCAACATTTTGGACGTGTGAAGATTGATGATGCTAGAGAATCCAATAATCAAAGGGTTTGCTGAATCCATTACTTGTAATAGACGATGTTATTTCTTAATTTTCAAATATACTCATTTTAGAAGTTTCATGCATACTTTCTTTACATGTTATGCATTCTGTTATTGATTTGATTAATGATTTCAGTGAATTTGAT | |||||||||
gi|90516284|gb|DY978142.1|DY978142 CLSS11894.b1_L22.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS11894, mRNA sequen TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): CTACCCCTTTTCCCTCCGCCGATGTCCTCTCATTCTTAGGGTTGCAATTTCCCTAAAGCTAGGAAGTCTAATCAGTCTCGATTAAGCCCCAGAAGGTTTTTCAGGTCTTGTGATTAAGTACAGTAACTCAGTCGGAGCAGTTTAGAAAAGATGATTCGAGTTGCTGCTGGTAGGCAGTGGAATGGTATTATCAGAGAACTCCATGGTTCAAGTTCGCCTATCACACCGCTGCTTCTGCAACAGTTTTCAACCACTAGTCAGTCTAAAGTGGCTTACACTGGCTCAGAAATTCTCAACTACATGGGGGGATTGGATGGTGATGAAAAACAGTTGATCCATAAGTTGGTGAATTTTCGCATGAAAGAAGGTAAAAAGACGAGAGTTCGTGCTATCTTCCATGAAACCCTTCACAAGCTAGCTCGTACTGATCGTGATGCAGTCAAACTTATATCTGAAGCCCTAGAGAATGTGAAACCCATTTGTGAAGTAGCAAAAGTAAGAATAGCTGGTAATATTTATGATGTCCCTGGGGTTGTAGCCAGGGATAGGCAACAAACTTTAGCTGTTCGTTGGATCCTTGATGCAGCTAAAAAACGACGAACTAATCATAGCTCAAGATTGGAGGAATGTTTGTCTGCTGAGATAATGGATGCTTACAGGAAGAGGGGAACTGCACGTAAGAAAAGAGAGGTTCTTCATGGACTTGCTTCCACCAATCGAAGCTATGCCCATTTCAGATGGTGGTAATATGGTACCACACAAGATCTACATCTCCTTTAATCAGATTATCTGGTCATCTTTGTTGCTTTTCCCTCACATTTTGGACGTGTGAAGATTGATGATGCTAGAGAATCCAATAATCAAGGGTTTGCTGAATCATTAC | |||||||||
gi|90514047|gb|DY975905.1|DY975905 CLSM9619.b1_E05.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM9619, mRNA sequence TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): GGGGAAGCAGAAGAAGAGGAAGAAAATGGTGAAAGAAGAATGGCGTTTTAAGGCGAACAATGAAGTACATGCAGCTGCATCTTTGACAATGAGAAACATCCTTGAATTAATCATGGGTAACATCGACGTTACACAGACAGGAAAACCGATGATTCATCTTGGACATGGTGATCCTTCAGTTTACCCTTGCTTTCGAACATCTCCAGTAGTAGAAGATGCTCTAGTGGAAGCCATTCGATCTGCTAACTTCAACTGTTATGCTACTGGAGCCGGAATTGATCCTGCAAGAAGACCTAATTATCCGACATACGAAGCTCGAGCCAGATTTAGTTCACTCGAGGTGCGTCATTTTGATCTCCTCCCAGAGAAAGGTTGGGAAGTTGATCTTGATGGTGTCAAAAGATTGGCAGATGATAAAACTGTAGCTATAGTTCTCATCAACCCAGGGAATCCTTCTGGAAGTGTTTTCACATATGAGCATATGCAAAAGATTGCAGAAACAGCAAGAGAACTTGGAATTCTGGTGATTGCAGACGAAGTTTATGCCCATCAAGCCTTCGGAGAAAAACCCTTTATCCCCATGGGAGTATTTGGTGCAATAGCGCCTGTTGTGACGATTGGGACGTTGTCAAAACGATGGATCGTTCCTGGGTGGCGTTTTGGTTGGATTGCAGTAACTGATCCAGTTGGCGTTCTTCACAAAACTGGGATTGTTAGTTCCCTGAAGAGTTGCCTAGTGATATCGGCAGAACCCCCCACTGTTATTCAGGGAGCTATTCCTCGCATACTGAAGAGCACACCGGAATCATTCTTCGTGAATATTAACAAGTTACTAAAAGAAGCAGCTGATATGTTTTATGAGAGACTTAAGGAGATACCCCTTTCTGCATGCCCACACAAACCCGAAGGATCTATGTTTGTCCTGGTG | |||||||||
gi|90498963|gb|DY960821.1|DY960821 CLSM11168.b2_O07.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM11168, mRNA sequen TGGCATCATCAAGATTCACGT EST sequence (targeted fragment marked with yellow): CGGGGCTCATTCTTAGGGTTGCACTTTCCCTAAAGCTAGGAAGTCTAATCAGTCTCGATTAAGCCCCAGAAGGTTTTTCAGGTCTTGTGATTAAGTACAGTAACTCAGTCGGAGCAGTTTAGAAAAGATGATTCGAGTTGCTGCTGGTAGGCAGTGGAATGGTATTATCAGAGAACTCCATGGTTCAAGTTCGCCTATCACACCGCTGTTTCTGCAACAGTTTTCAACCACTAGTCAGTCTAAAGTGGCTTACACTGGCTCAGAAATTCTCAACTACATGGGGGGATTGGGTGGTGATGAAAAACAGTTGATCCATAAGTTGGTGAATTTTCGCATGAAAGAAGGCAAAAAGACGAGAGTTCGTGCTATCTTCCATGAAACCCTTCACAAGCTAGCTCGTACTGATCGTGATGCAGTCAAACTTATATCTGAAGCCCTAGAGAATGTGAAACCCATTTGTGAAGTAGCAAAAGTAAGAATAGCTGGTAATATTTATGATGTCCCTGGGGTTGTAGCCAGGGATAGGCAACAAACTTTAGCTGTTCGTTGGATCCTTGATGCAGCTAAAAAACGACGAACTAATCATAGCTCAAGATTGGAGGAATGTTTGTCTGCTGAGATAATGGATGCTTACAGGAAGAGGGGAACTGCACGTAAGAAAAGAGAGGTTCTTCATGGACTTGCTTCCACCAATCGAAGCTATGCCCATTTCAGATGGTGGTAATATGGTACCACACAAGATCTACATCTCCTTTAATCAGNATATCTGGTCATCTTTGTTGCTTTTCCCTCACATTTTGGACGTGTGAAGATTGATGATGCTAGAGAATCCCATAATCAAAGGGTTTGCTGAATCCATTACTTGTAATAGACGAATGTATTTTCTAATTTTC | |||||||||