| mature miRNA: TGGCATGAATGTCAGACCCA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73891483|gb|DT494221.1|DT494221 WS01117.BR_M14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_M14 5', mRNA sequence TGGCATGAATGTCAGACCCA EST sequence (targeted fragment marked with yellow): TCCCCGAACTTTCTTTCATTTCCCTGTTTTTTCTTGAAAAAAAGGTTTTAGCTTTATAACCACGTTGCTTCAAGTTCAAGAATTTCAGGTAACCTGAACAAAAATGGCAGAGGAGAAGGGTTCAATTGCCAAAGATATCACTGAACTTATTGGTAAAACACCATTGGTGTATCTCAACAATGTTGTGGATGGTTGTGTGGCGCGAATTGCTGCCAAGCTGGAGATGATGGAACCTTGCTCGAGTGTCAAAGACAGGATTGGGTATAGTATGATCACAGATGCAGAGGAGAAGGGGCTTATCAAGGCGGGTGAGAGTGTCCTGATTGAGCCTACGAGTGGCAATACTGGCATAGGGCTGGCATTCATGGCAGCTGCTAAGGGCTACAGATTGATAATTACCATGCCTGCTTCGATGAGTCTAGAGAGAAGAATGGTTCTCCTTGCTTTTGGAGCTGAGTTGGTCCTTACTGATCCAGCCAGAGGTATGAAGGGGGCTGTTCAGAAGGCAGAAGAGATATCGGCAAAGACACCTAATTCTTATATTCTGCAACAATTTGAAAATCCTGCCAACCCAAAGGTTCACTATGAGACAACTGGACCAGAGATCTGGAAAGGCTCAGGTGGGAAAGTTGATGCCTTTGTTTCTGGGATAGGGACCGGGGGTACAATAACTGGAGCAGGGAAGTATCTCAAGGAGCAAAACCCTGATATAAAGCTTTATGGTGTAGAACCGGTTGAAAGTGCAGTGCTGTCTGGAGGGAAACCTGGTCCACATAAGATCCAGGGAATTGGTGCTGGCTTTATACCTGGAGTTTTGAATGTCGATTTACTTGATGAAACTGTTCAAATATCAAGTGAAGAAGCAATTTGAACTGCAAAGCTTCTCGCCTTGAAAGAAGGACTGCTGGTAGGGATATCATCTGGAGCTGCTGCAGCTGCT | |||||||||
gi|24065094|gb|BU873570.1|BU873570 Q057A04 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGGCATGAATGTCAGACCCA EST sequence (targeted fragment marked with yellow): GGATCCTTGCCTAAAGCTTTCTACTTTCTTTGTTCTTTCTATGCATAGATTGATAAGGTGTTAGTGTAACCTGAACAAAAATGGCAGAGGAGAAGGGTTCAATTGCCAAAGATGTCACTGAACTTATTGGTAAAACACCATTGGTGTATCTCAACAATGTTGTGGATGGTTGTGTGGCGCGAATTGCTGCTAAGCTGGAGATGATGGAACCTTGCTCGAGTGTCAAAGATAGGATTGGGTATAGTATGATCACAGATGCAGAGGAGAAGGGGCTTATCAAGCCGGGTGAGAGTGTCCTGATTGAGCCTACGAGTGGCAACACTGGCATAGGGCTGGCATTCATGGCAGCTGCTAAGGGCTACAGATTGATAATTACCATGCCTGCTTCGATGAGTCTAGAGAGAAGAATGGTTCTCCTTGCTTTTGGAGCTGAGTTGGTCCTTACTGATCCAGCCAGAGGTATGAAGGGGGCTGTTCAGAAGGCAGAAGAGATATCGGCAAAGACACCTAATTCTTATATTCTGCAACAATTTGAGAATCCTGCCAACCCAAGGGTTCACTATGAGACAACTGGACCAGAGATCTGGAAAGGCTCANGTGGGAAAGTTGATGCCTTTGTTTCTGGGATAGGGACCGGGGGTACAATAA | |||||||||
gi|73884883|gb|DT487621.1|DT487621 WS02534.B21_D05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02534_D05 3', mRNA sequence TGGCATGAATGTCAGACCCA EST sequence (targeted fragment marked with yellow): GCTTATGTGCAGAGCCAGTCCTTGAATTCTGCTCATATCAAGTGGACTGCTGTCCGACAGGAAGCAGCTAGTACCTATGAGCTTGTAGAGGTAAGCACCGGGGGGAAATTGAGTAGGCACAATCTCCATGTTCAACAATTGGGTCCAGATACAGCTACAGAGTTATCGACCTTCCACTTGTCTGTTGGTGATCAAACACAAGATTTGCATAGCAGGCTAATTTTGGACCATCCAAGAGGTCGTTCTCAGCAACTTCACAAGTGTATTGTTGCTCATTCACAAGGACAAGCTGTCTTTGACGGGAATGTAAAGGTCAACAGATATGCACAGCAGACAGATGCAGGACAATTAACAAGGAGCCTCCTCCTTGAACCACGTGCAACTGTGAATGTCAAACCCAATCTCCAAATTATTGCAGATGATGTCAAGTGCTCCCATGGAGCTGCAATCAGCGATCTGGAAGAAACCCAACTATTCTACTTTCAGGCACGCGGCATTGACTTAGAGACAGCTCGAAAGGCTCTTGTATTTTCTTTTGGAGCTGAGGTAATTGAGAGGTTGCCTAATTCTTTTATGCAGAAGCAAGTCGAGAGTCATGTCAAAGGATTACTGAGTTCCACTTTCAAGGGATCTTCACATTAAAGGGCTGTGGATGTTTAGAAAACTTGACTGTTTAAATTGTTTTGCAGAGGCACAGTCACTATCAGTAAACTAACAATTAAATTTTTGGCCTGTATCAAGTAGCTTTTAGTGCTCCATTGGGTTTACATGCATGCCAACAATATGGGATTGTACTTCTATAAATATGTAATCTTATTTTCCAAAAAAAAAAAAAAAAAA | |||||||||