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mature miRNA: TGGCCAAGGTCTCTTGAGGCT
species: Triticum aestivum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|222364948|gb|GH726813.1|GH726813 G356.101I03F010906 G356 Triticum aestivum cDNA clone G356101I03, mRNA sequence

TGGCCAAGGTCTCTTGAGGCT
|||||||..||||.|||| ||
ACCGGTTTTAGAGGACTC-GA

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGGAACTCGCGAGTGACAAGGAAACAGTTGCTGCCACCTCGCTCCAGATCGAGCAGCAGGTCTGAGCCACGGTGGCGAGAGCGGCCCGATGTGCAGGTTCAAGCTGCGTGAAGAGGGAGGGGGTGCTCGCTATGGCTCTGACCATGGAGCCAACCCCATGGACAAGGAAGCTACTGAATTAGGTAAGAAGGCCAAGGAATTGAAGAAGGCATCGGAAGCCCTTCACCAAGAAGAGAGAAGTGGGAACAAAGGCAGAAAATGGCGCAAAAACATGAAGGCTGTCGAGAAGGCTGAGGCTACCTGGGCTTTTACATTGCTTGATTACATTGGAAAACTCATATTCGGCATTGTTGGATTAATTGTATCGATTGCTTGGGTAGCACATATTATCATATAATTGTATCTTCTTTCCCGAATGAGATCTTCATAAAGATGGACAGTGTTTGGGGTCTGCTTGGGACTGCTGCTTTTGCATTCTTCTGCTATCTCCACATCGCAGTGATTGCTGGAGAAATGATGCTTGGCCTGAAATTAGTTTTCATCAGCATTCACCCAATATGGGGAGGAACGTTGATGAACTCTTTTTTGTTTAATGTTGGACTGATCCTACTTTGTTCCATCAGTGTGATTCAGTTCTGCGAGACAGCTTTGGCGTACTATGCACAAGCAACTGCAGCTCAGGAGATTTTGGCCACACGCTGCAGTCTCTTCATGGAAATTATTAAGTATTTCTACAATG