| mature miRNA: TGGCGCTTCCTTTTGAGCCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73897261|gb|DT499999.1|DT499999 WS9991.BR_O24 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01110_H07 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GGCACCCTCTTATCTTTTTCCGCAGCCAGGTTTTCCAATCAAAGAAAGAAGGGAACACAAAGCTTGGTTGCCTTGCCGCCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTTTTCTATTTTATCAACAATAGAGAGCTGTCGTTCACTTTAGTGTTTGCCCCTGTTTATGTTTGTTTTATTACCAGTACTGATTTCAGATAAGTAGAGCATCGCTGTTTTAAATTTCATGGTTTTGTTAGACCTTCTAAACTGAAAGGAAATGGGATTTTGTTTTGCTTATTGGCCTTCATTGCTG | |||||||||
gi|24066356|gb|BU874832.1|BU874832 Q072D12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): CATCTGCCCTTCTCTTCTATCTCTTCAAGAAAATTTAATATCACAAGATGAATAGAGAGAAGCTCATGAAGATGGCTGGTTCTGTTCGAACTGGTGGCAAGGGAACCATGAGAAGAAAGAAGAAGGCAGTGCACAAGTCATCAACAACTGATGACAAGAAGTTGCAAAGCACCTTGAAGAGAATTGGGGTTAATACAATTCCAGCTATTGAAGAAGTGAACATCTCTAAGGATGATTTGGTTATTCAGTTTGTTAACCCGAAAGTCCAAGCCTCTGTTGTTGCCAACACATGGGTTATTACAGGCACTCCTCAAACCAGAAAACTACAAGATATTCTTCCAGGGATTATCAACCAACTTGGGCCCGATAACTTGGACAACCTTAGGAAGTTGGCGGAGCAGTTTCGAAAGGAGGTGCCATCTGGTGAGGCAGGAGCAGCACAAGAAGATGACGATGATGTCCCAGAGCTTGTGGGCGGTGAGACTTTTGAAGCTGCTGCAGAAGAGGGACAGAAGTAGTAGTGCTTTAAGTGGTCCTTTTATTTTCCTAGTACTGGATTGACCTCTACCCGGGCGTATACATATCCCAGCTCTTACCCAAGGGTTGCTCCTTTCCTGATGGTA | |||||||||
gi|73895710|gb|DT498448.1|DT498448 WS0115.BR_G06 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_G06 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GCTCGAAAACTCTCTCTACAATATTCGGCTATCAGAAAAAAGAGACCCACAAGGAAACAGAACCCTGATCCAAGATGAGAGCTAAGTGGAAGAGGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCAGAAAGATGAGACAGAGATCCAAGTAAGCTGTGGACATGGACAAGATGGAGCTTTCTGCTGGTATATATGTCTTTGATTGCTGGTGGCTTTGTGCTGCATGAAGCTGCGAGAATGAAGGATGTGTATTAGGGAATACTTCCATTTGTTTCATCATCTAGGGTTTTAAGACTGCTTCTGCAACTAGTTTTCTGTTGGCTTAAATTTTGTGTTGTATTTGACTTGCTTTTGTCTTTAATATTACTTATGAATGGAAATGACCGAAACTTGTT | |||||||||
gi|73897158|gb|DT499896.1|DT499896 WS9991.BR_K13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0119_G13 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GAAGAATTCACTCTCCAGGAATCTCATCCACTCTACATCGGCTAATTGAGAAAGAGATCTACAAGGAAACAGATACCTCTGATCCAGGATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCAGAAAGATGAGGCAGAGATCCAAGTAGGCTGCGGGCTTGGACAAGATGGATCTTTTTTCTACTGGTACATGCCTATGATGCTTATGGCTTTGTGCTGCGTGAAGCTGTGGGGATGAGGGATGTGTATTAGGGAATGTTTCATCTTGTATGGTTTTAAGACTGCTTCTGCTTTTAGTATTCTGTTGGCTTTAATTTTGTGTTGTATTTGAC | |||||||||
gi|52504026|gb|CV251051.1|CV251051 WS0115.B21_K24 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_K24 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): CTAGTTTAATTAAATTAATCCCCCCCCCCCCCCGACCCTTTTATCTTTTTCCGCAGCCAGGTTTTCCAATCAAAGAAAGAAGGGAACCCAAAGCTTGGTTGCCTTGCCGCCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCCCCGAAAGATGAGGCAGAGATCCAAGTAGTTTTTTATTTTATCAACAATAGAGAGCTGTCGTTCACTTTAGTGTTTGCCCCTGTTTATGTTTGTTTTATTACCAGTACTGATTTCAGATAAGTAGAGCATCGCTGTTTTAAATTTCATGGTTTTGTTAGCCCTTTTAAACTGAAAGGAAATGGGATTTTGTTTTGCTTATTGGCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAA | |||||||||
gi|52500261|gb|CV247286.1|CV247286 WS01117.B21_K16 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01117_K16 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): CTAGTTTAATTAAATTAATCCCCCCCCCCCGGAAAACTCTCTTTCCAATATTCGGCTATCAGAAAAAAGAGACCCCCAAGGAAACAGAACCCTGATCCCAGATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGGGGTTGAAGAGGAAGCGCCGAAAGATGAGACCGAGATCCCAGTAAGCTGTGGGCTTGGGCAAGATGGAGCTTTTTGCTGGTATATATGTCTTTGATTGCTGGGGGCTTTGTGCTGCCTGAAACTGCGAGAATGAAGGATGTGTATTAGGGAATACTTCCCTTTGTTTCCTCCTTTAGGGTTTTAAGACTGCTTTTGCAACTAGTTTTTTGTTGGCTTAAATTTTGTGTTGTATTTGACTTGCTTTTGTCTTTAATATTACTTATGAAAGGAAATGGCCGAAACTTGTTCAATTTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|24066350|gb|BU874826.1|BU874826 Q072D06 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GGAGTTACAACGCAAATCACCTGACACAAAAGCTTTCTCATTTTACTCTGCCTTTAGTTGTTATATTTTCTTGATTAAGTTCGGATTGTGAATTTGATCGCCATGGCTGGGGTAGATAAGAGCCACGAGTATGAGACCAAGACCAAAGCTGGTGAAGAGAGTGGCGGTGCTGAGACCAGGGATCGTGGGTTGTTTGGTTTCATGGGGAAGAAAAAAGAAGAGAAGCCTCAAGAGGAGGTGCCTGCCACTGAGTATGAAGAGAAAATTCATCGATCAGACAACAGTTATCCTGGTGACGGGGAGAAGAAACATGAGCATACAACTGTTCCTTCTAACACAGAGACACCCCTTGAACCAGAGAAGAAGAAGAGTTACTTTGAGCAAGCCAAGGACATGATACCAGCGTATAAAAAAACTGAAGACGGACCTCCTTCTCCAGCTGAAGCCGCAGTTCATCCAACAGAGACGCCCCTTGAACCAGAGAAGAAGAGTTACTTTGAGCAAGCCAAGGGCATGATACCAGCGTATAAGAAAACTGAAGACGCCCCTACTTCTCCATCTGAAACCGCAGTTCATCCCACGGAGACACCCCTTGAACCAGAGAAGAAGAGTTACTTTGAGCAAGCCAAGGGCATGA | |||||||||
gi|52376966|gb|CV226987.1|CV226987 WS0165.B21_N20 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_N20 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCAGAAAGATGAGGCAGAGATCCAAGTAGGCTGCGGGCTTGGACAAGATGGATCTTTTTTCTACTGGTACATGCCTATGATGCTTATGGCTTTGTGCTGCGTGAAGCTGTGGGGATGAGGGATGCGTATTAGGGAATGTTTCATCTTGTAGGGTTTTAAGACTGCTTCTGATTTTAGTATTCTGTTGGCTTTAATTTTGTGTTGTATTTGACTTCTTTACTTTAATATTGCTTATGGATGGATGAATGAAACTGTG | |||||||||
gi|73895495|gb|DT498233.1|DT498233 WS0114.BR_M03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0114_M03 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): TGAATTTCTCCCTGGCTTCGCTTTTAATTTTTAGCTCTGCTCACTGGTACTGCTCATCACATCTGCCCTTCTCTTCTATCTCTTCAAGAAAATTTAATATCACAAGATGAATAGAGAGAAGCTCATGAAGATGGCTGGTTCTGTTCGAACTGGTGGCAAGGGAACCATGAGAAGAAAGAAGAAGGCAGTGCACAAGTCATCAACAACTGATGACAAGAAGTTGCAAAGCACCTTGAAGAGAATTGGGGTTAATGCAATTCCAGCTATTGAAGAAGTGAACATCTTTAAGGATGATTTGGTTATTCAGTTTGTTAACCCTAAAGTCCAAGCCTCTATTGTTGCCAACACATGGGTTATTACAGGCACTCCTCAAACCAGAAAACTACAAGATATTCTTCCAGGGATTATCAACCAACTTGGGCCAGATAACTTGGACAACCTTAGGAAGTTGGCGGAGCAGTTTCAAAAGGAGGTGCCATCTGGTGATGCAGGAGCAGCACAAGAAGATGACGATGATGTCCCAGAGCTTGTGGGCGGTGAGACTTTTGAAGCTGCTGCAGAAGAGGGACAGAAGTAATAGTGCTTTAAGTGATCTTTTTATTTTCCGTGTACTGGATTGACTTCTACCCGGGCTCCTGCATATTCCAG | |||||||||
gi|73896043|gb|DT498781.1|DT498781 WS0116.BR_F12 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_F12 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GAGCTCTCTCTATCATTCTCCGCTGCCTCTAGGATTCTGAATCAAAAGAAAGAAGGAACACAGAGCTTGGATACTTTGTCACCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAAAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTTTTCTATTTTATCAATAATAGTGAAAGTTGTCGTTCGTTTTAGTATTTCTTGTTTCAGTTATCAGTACTACTTTCAACTGAGTAGATTATTTCCGTTTTAAATTTCATGATTTTGTTAGACTTTCAAACTGGATGGAAATGGGATTTTGTTTTTGCTTAAAAAAAAAAAAAAAA | |||||||||
gi|52403538|gb|CV240154.1|CV240154 WS0234.B21_J04 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_J04 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): AAAGAAGAAGGCAGTGCACAAGTCATCAACAACTGATGACAAGAAGTTGCAAAGCACCTTGAAGAGAATTGGGGTTAATGCAATTCCAGCTATTGAAGAAGTGAACATCTTTAAGGATGATTTTGGTTATTCAGTTTGTTAACCCTAAAGTCCAAGCCTCTATTGTTGCCAACACATGGGTTATTACAGGCACTCCTCAAACCAGAAAACTACAAGATATTCTTCCAGGGATTATCAACCAACTTGGGCCAGATAACTTGGACAACCTTAGGAAGTTGGCGGAGCAGTTTCAAAAGGAGGTGCCATCTAGTGATGCAGGAGCAGCACAAGAAGATGACGATGATGTCCCAGAGCTTGTGGGCGGTGAGACTTTTGAAGCTGCTGCAGAAGAGGGACAGAAGTAATAGTGCTTTAAGTGATCTTTTTATTTTCCGTGTACTGGATTGACTTCTACCCGGGCTCCTGCATATTCCAGCTCTTACCCAAGGGTTGCTCCTTTCCTGATGGTAATTTTTACAGTTTTGTAGTGTTTCATGAACAGCTTCTTGCGACAAACAGGAAAACATGTTATGAAACCAGATGATGCTGATGTCTGAGATCTATTTCAAGAAATTTCAAATCTTTGTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73892259|gb|DT494997.1|DT494997 WS0112.BR_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0112_A21 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GACCCTCTTATCTTTTTCCGCAGCCTGGTTTTCCACTCAAAGAAAGAAGGGAACACAAAGCTTGGTTGCCTTGCCGCCATGAGAGCCAAGTGGAATAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCACAGATCCAAGTAGTTTTCTATTTTATCAACAATAGAGAGCTGTCGTTCACTTTAGTGTTTGTCCCTGATTATGTTTGCTTTATTATCAGAACTGATTTCAGATAATTAGAGCATCGCTGTTTTAAATTTCCTGGTTTTGTTACACCTTCTAAACTGAAAGGAAAAGGGATTTTGGTTTGCTTATTGGCCTCCAAAAAAAAAAAAAAAA | |||||||||
gi|73885668|gb|DT488406.1|DT488406 WS02536.B21_F13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02536_F13 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): TAACTTTCAAATCCTTTGGCAGGTCTCTGTTGGAAACGGGTTGGTAATGGGATGGTTACAGTTCTTGGAAGCTGGGAGGAAATTTGATTGCATAAGTTCTCCTACCACTGCCTATACCATCCCTGTGCACGTTGAGGAAGTCAAAGATATTGTCAGTGTTGCCAACTACATACTCATTGTGGAGAAGGAATCAGTATTCCAGCGTTTAGCAAATGATAAGTTCTGTAATGCAAACCGCTGTATTGTGATCACTGGAAGAGGGTATCCAGATATTCCCACCAGAAGGTTCCTGCGGCTACTTGTTGAGAAGCTGTGTCTGCCTGTCTACTGTTTAGTAGATTGTGATCCATATGGCTTTGACATCCTGACTACCTATCGATTTGGTTCCATGCAAATGGCATATGATGCAAAAATTTTGCGTGTCCCGGAGGTACAATGGCTTGGAGCTTTTCCTTCGGATTTTGAGAAATATGATCTTCCACAACAGTGTTTGCTCCCATTGACAGCAGAGGACAAGAGAAGAACCGAGACTATGTTACTCAGATGCTACCTTCAAAAGGAAGTGCCGGAATGGAGGTTGGAGCTAGAGCTAATGTTGCAAAAGGGAGTAAAATTCGAGATTGAAGCATTTTCTGTGCACACCCTTTCCTTCTTGTCAGAGCAGTACATACCATCAAAGATTCCGAAAGTTGAAGTGCTCGCTGGAAACAACATCAAGAGTTGAACTACTCGATTGGAAAAAGGTTTTTTTTGGATAGTTGAGAGTTGAAATCCTCGATTGAAAATGAAATGAAATTAAAATACTTAATTGAAAAGGGTAAAGTTCATATAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73890469|gb|DT493207.1|DT493207 WS02553.C21_L10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_L10 3', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GTTCCAATCAAAGAAAGAAGGGAACACAAAGCTTGGTTGCCTTGCCGCCATGAGAGCCAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGTTTTTTATTTTATCAACAATAGAGAGCTGTCGTTCACTTTAGTGTTTGTCCCTGTTTATGTTTGTTTTATTATCAGTACTGATTTCAGATAAGTAGAGCATCGCTGTTTTAAATTTCATGGTTTTGTTAGACCTTCTAAACTGAAAGGAAATGGGATTTTGTTTTGCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73895816|gb|DT498554.1|DT498554 WS0115.BR_K21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_K21 5', mRNA sequence TGGCGCTTCCTTTTGAGCCT EST sequence (targeted fragment marked with yellow): GGAAAACTCTCTCTACAATATTCGGCTATCAGAAAAAAGAGACCCACAAGGAAACAGAACCCTGATCCAAGATGAGAGCTAAGTGGAAGAAGAAGCGTATGAGGAGGTTGAAGAGGAAGCGCAGAAAGATGAGACAGAGATCCAAGTAAGCTGTGGACTTGGACAAGATGGAGCTTTCTGCTGGTATATATGTCTTTGATTGCTGGTGGCTTTGTGCTGCATGAAGCTGCGAGAATGAAGGATGTGTATTAGGGAATACTTCCATTTGTTTCATCATCTAGGGTTTTAAGACTGCTTCTGCAACTAGTTTTCTGTTGGCTTAAATTTTGTGTTGTATTTGACTTGCTTTTGTCTTTAATATTACTTATGAATGGAAATGACCGAAACTTGTTCAATTTAAGAAAAAAAAAAAAAAAA | |||||||||