| mature miRNA: TGGCGGCCACAATGTCCTCCA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88386126|gb|CI570761.1|CI570761 CI570761 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): GGGGAGGCAGTTGTGGCCGCCATCAAGAACGAAGCAAGCCTACTTCCCAACTGCTACATACAACATATCCGCATATCGCGGGAGGAAGGATTGGAGGATATCGACATATCGCGGGAGGAAGGATGGGAGGAAGGGGGCCACTCGATTGAGCAACAAGAAGAGATCACTAATCCCCATACCGAGCACACAATAACCCCTGGCACATAGTTCATCTGCAATTTCATCTATTCAAGGTACGTAACTAGTATAGTATTTGATAACAATCAATGGTTTCCCTGAGGCTCATCTGATCATATGTTATCTTATTATTAGTTATGTATACTTCCGGTTCCTTGTTGGCAGAAGCACATATATATTTGTTCCTTTAA | |||||||||
gi|88501782|gb|CI695781.1|CI695781 CI695781 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): GTGGAGCANGCAGTCGCACCTCCCACCCACCCGCAGNCGCCGGCGAGTTCGAGCGGNGGCCACCGGGCGGGCGGCGGGGCGGCGGCTCGGCTCCCCTGATCTCCCTCCCCTGNGCCGCTGCGCGGTATGGACCTCCAGGAATTCCAGNCCCCGCGGTACCGCCGTCGCGGCCGAGCCACTCACCGTCCCGAGAACGACACANCCGCCGCCGNCACCGCCGCCTCTGGACGCGGAGGGTGTTGTCCTCGCGGAGGAAGACCCGGTGGCGGATCCGGGGGTGGAGGTGGTGGAGGAGGATGTGGCCGCCGTCGGTCGCCCAACAACCCGGCCCCGCTGCCCCACCTTTC | |||||||||
gi|58598594|gb|CK009122.1|CK009122 32473rsicef_3035.y1 Oryza sativa cv. PA64s panicle sterile cDNA library Oryza sativa Indica G TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): TCCCCGGGCTGCAGGAATTCGGCACGAGAATGTTATGACTGATCATTTCAGAGTATATCTTGCAAGCAGTGTCAAACCCAAAGCGTGTGGAACCTCCTTGCATTTCAGATCTCCATCAATAGTCTTGGGCAACCAATGACACGAGTTTTCATGTTCTTCCCCCTGAAGTACTCAGCAAGAAGGCATGCGTTTGTGTTTGAATCATCACCACCAATGACAACAAGCCCATCCAAATCAAGTTTGTTTACAGTGTCTTCAGCTTGCTTGAACTGCTCTGGTGTTTCAATCTTGTCCCTACCACTGCAGATCATATCAAATCCACCCTGGTTTCTGTAGGGGTACACATAATCCGCAGTGAGCTCAACGTACTTGCACTTCATGACTCCAGCTGGACCTCCCTTGAATCCATACATGACGGATCCTTTTGCATATTCCTGCAGGTAATCGAAGATGCCGCAGATGACATTGTGGCCGCCGGGCGCCTGACCGCCGGAGAGCACGACGCCGACCTTGAGCGGCCTGGTGGACGCCGGCTCCGGCGACGGCACCAGCGACACGGACGGCTGGCCGAACAGGTTGGGGAACAGCTTCGCGATCTCACCGGGGTTGCCGGCGGCGGAGCTGGCGGGGCCGTCGGCGA | |||||||||
gi|88719677|gb|CI743187.1|CI743187 CI743187 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): GTGTTCCTCGCTGATTGACTGGAAAACGCTCCTAGCATCCCCCATACACTTGCATTTGCTGTACATGTCAATAAGACTGTTAGAGACCGAAATGTCACTACTCAATCCTAGTTTCACCGAGCAGCTATGCAACTGCTTCCCAGTCTCTATGGATGCCAAGCTTGCAGCAGACGAAAGGAAGCTAGCGATGCTGAAACCATCGATATCAACATCCTCATGGAACATCCGGACAAACATTTCAAGGGTCCTCTGTTGAAGGCCCATCTGATTTAACCCTCTAGCAAGGCTTGTGTATGTGAACCTGTCCCTTATGAAGGCCATTGTGGTCGCCACTGCCCATGCATCATCCATCCTTGCA | |||||||||
gi|117216446|gb|CT857916.1|CT857916 CT857916 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): ATTTCAGCCTCTCCTTCCTCCGCCGCGATCGAACCCTAACTAACTCCCACCTACTCGGCGCAATGCCGCGCTCCCCTTCCCCTCGCCGCCGGAGGCGGAGGCGGAGGCAAGGGACTGGGCGGACCTGCCGCGGGACGCGCTGATGGCCGTGCTGTACAGGCTGGGCAGCGTCGAGAGCCTCGGGGGCGCCGCCCGGGCGTGGGCGAGGGGGCTCCCGCGGGACGCGATGCAGGCCGTGCTCCGCCGCCTGGGCCAGGCCGAGATCCTCGGGGGCGCCGGCCAGGTGTGCCGCTCCTGGCGCCCCGCGGTCGCCGACGAGGCCGAGCTGTTGCGTCGAGGCGGGGAGGAGGAGGGGCGCCCGCCCGCCCGCCTCTCCGTCGCCCGTGTCGCCGCGGGCCTCGGCTCGGGGCGGCGGCGCGAGCCGTTCGTGGCGGACCGCATCGGGTGCGACGGGTTCCTTCTCTACCTTGGCAAGCGGTTACCATACATTAGGAGCCTTTGCCTCACCTCTTGCTACAGCGTGTGTAGTGAAGGATTTGTGGAGGCAATAAAAGGATTTCCGCACCTTGAGAAGCTTGAGCTTTCACTTTGCACAAATATCTTTGGGGAGGCTATTGTGGCCGCTGCGGAAGCTTGCCCACACCTGAAGCGTTTCAGGCTGAGTAGAGCTCGCTTCTACTGTTTTGATGATGATCACAGCAATGAATAGGAAAGCCCTGGCAATTTTCAACAAAGCGTGGAGCTACGATCGCTCCCAACTTTTCCGGCAAACAATCTCAGCAAACGAAGGCATATTCAGCTTATCCTTGGAAAACCTGCCCTGGACTTGGAAGTCTCCCCGGATATCCCCCCATTGGGTTTTAACATTTAAAAATGGAAAGCCTTCTTTTGGAAAGCCAAAGGGGGGTTAGGGGTCCAAAACCCTGGGAGGCCCCCCCGGAAGAACTTTAATTGGGAGAAACTATTAAATTTTTCGGGGGAAAAAACCCCCCCCTTCAGGGGGAAAAAAGTCAAATTTTTCCCAAAAAGGAAAACCCTTTTTGGGGCCCCCAAGGGGGGGGATTAAAAGTATATTTTGGGGAAAAAAAAAAAATTAAAAAGAGGGGGAAAAAAGAGAGAAATAAGGGGGGAAAAAAAAAACTTTTAAGGAGAAAAAGGGTTTTTTTTTTCCCCCCCCCCCGGAAGGGGAAAAGAAAGGAAAGAAAAATATTTTTTTTTTATAATTTTTGTGTGGAGGAGGGGG | |||||||||
gi|88234825|gb|CI232676.1|CI232676 CI232676 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGGCGGCCACAATGTCCTCCA EST sequence (targeted fragment marked with yellow): CGGCAATCTACGACGTATTTTTTTCCTCAGTTCGAACGGACGACTGCAAAAGAAGCAGCAGCGTTACAGGGCATGCCGGCATGACAAGATCAGTGTGCTCACAACAGATCAGTCAGCGGGCCTTCATCAGGAACCACATAAAAGTGTGAGGATACATTTGGTACTAGCAAATAAAATTCGACCAAAAAAGGATCTGAATGGAGGTAAACCATCTGAAACCGAGCTTCCTGATGACTCATTCACAAGCTTCTTCCCAATCATCCACTTCGACTTCAGGCTGCATCTTACTAACCGGTGGCGCAGTACTTGGCCCTGCGCTGGATACAGCATCGGTGCGAGGAGCAGGCTTACTCTCCTCGACTGGCCTGGAGCTTGTGGCCGCATCGGACTCCAGGGCGTTCCAGCGGTTCGATGTCCCCATGACTTGGGCGACAGTGTCGCCGCCACGCCTCCATACTGATCCTGGAGCTTGACCAAGCACACCTGTCCAGTCTCCTGAGGATGGATCAGGCTCAGAGGCAGTGGCCTTCTTCCATGGATTGGCAATGCT | |||||||||